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Zhang Z, Sheetz EG, Pink M, Yamamoto N, Flood AH. Cone Angles Quantify and Predict the Affinity and Reactivity of Anion Complexes between Trifluoroborates and Rigid Macrocycles. Angew Chem Int Ed Engl 2024; 63:e202409070. [PMID: 38969622 DOI: 10.1002/anie.202409070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/04/2024] [Accepted: 07/05/2024] [Indexed: 07/07/2024]
Abstract
Steric manipulation is a known concept in molecular recognition but there is currently no linear free energy relationship correlating sterics to the stability of receptor-anion complexes nor to the reactivity of the bound anion. By analogy to Tolman cone angles in cation coordination chemistry, we explore how to define and correlate cone angles of organo-trifluoroborates (R-BF3 -) to the affinities observed for cyanostar-anion binding. We extend the analogy to a rare investigation of the anion's reactivity and how it changes upon binding. The substituent on the anion is used to define the cone angle, θ. A series of 10 anions were studied including versions with ethynyl, ethylene, and ethyl substituents to tune steric bulk across the sp, sp2 and sp3 hybridized α-carbons bearing 0, 1 and 2 hydrogen atoms. A linear relationship between affinity and cone angle is observed for anions bearing substituents larger than the -BF3 - headgroup. This correlation predicted affinities of two new anions to within ±5 %. We explored how complexation affects the reactivity of fluoride exchange. The yield of fluoride transfer from R-BF3 - to Lewis acid triphenylborane is correlated with cone angle. We predict that other rigid macrocycles, like commercially available bambusuril, could follow these trends.
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Affiliation(s)
- Zhao Zhang
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Edward G Sheetz
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Maren Pink
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Nobuyuki Yamamoto
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Amar H Flood
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
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2
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Turebayeva P, Luchsheva V, Fedorishin D, Yerkassov R, Bakibaev A, Bolysbekova S, Tugambayeva T, Sergazina S, Nurmukhanbetova N. Nanoparticles Based on Silver Chloride and Bambusuril[6] for the Fine-Tuning of Biological Activity. Int J Mol Sci 2023; 24:16126. [PMID: 38003315 PMCID: PMC10670921 DOI: 10.3390/ijms242216126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 11/03/2023] [Accepted: 11/05/2023] [Indexed: 11/26/2023] Open
Abstract
The prevalence of numerous infectious diseases has emerged as a grave concern within the realm of healthcare. Currently, the issue of antibiotic resistance is compelling scientists to explore novel treatment approaches. To combat these infectious diseases, various treatment methods have been developed, harnessing cutting-edge disinfecting nanomaterials. Among the range of metallic nanoparticles employed in medicine, silver nanoparticles (AgNPs) stand out as both highly popular and well-suited for the task. They find extensive utility in cancer diagnosis and therapies and as effective antibacterial agents. The interaction between silver and bacterial cells induces significant structural and morphological alterations, ultimately leading to cell demise. In this study, nanoparticles based on silver and bambusuril[6] (BU[6]) were developed for the first time. These NPs can be used for different biomedical purposes. A simple, single-step, and effective synthesis method was employed to produce bambusuril[6]-protected silver chloride nanoparticles (BU[6]-Ag/AgCl NPs) through the complexation of BU[6] with silver nitrate. The NPs were characterized using X-ray phase analysis (XPS), infrared spectroscopy (IR), thermogravimetric analysis (TGA), scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDS). When the SEM images were examined, it was seen that the synthesized BU[6]-Ag/AgCl NPs were distributed with homogeneous sizes, and the synthesized NPs were mostly spherical and cubic. The EDS spectra of BU[6]-Ag/AgCl NPs demonstrated the presence of Ag, Cl, and all expected elements. BU[6]-Ag/AgCl NPs showed high antibacterial activity against both E. coli and S. aureus bacteria.
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Affiliation(s)
- Pana Turebayeva
- Department of Chemistry, L.N. Gumilyov Eurasian National University, 010000 Astana, Kazakhstan; (P.T.); (R.Y.)
| | - Venera Luchsheva
- Faculty of Chemistry, National Research Tomsk State University, 634050 Tomsk, Russia; (V.L.); (D.F.)
| | - Dmitriy Fedorishin
- Faculty of Chemistry, National Research Tomsk State University, 634050 Tomsk, Russia; (V.L.); (D.F.)
| | - Rakhmetulla Yerkassov
- Department of Chemistry, L.N. Gumilyov Eurasian National University, 010000 Astana, Kazakhstan; (P.T.); (R.Y.)
| | - Abdigali Bakibaev
- Faculty of Chemistry, National Research Tomsk State University, 634050 Tomsk, Russia; (V.L.); (D.F.)
| | - Saltanat Bolysbekova
- Higher School of Scientific Research, Astana International University, 010000 Astana, Kazakhstan;
| | - Tokzhan Tugambayeva
- Department of Chemistry and Chemical Technologies, Toraighyrov University, 140008 Pavlodar, Kazakhstan;
| | - Samal Sergazina
- Department of Chemistry and Biotechnology, Sh. Ualikhanov University, 020000 Kokshetau, Kazakhstan; (S.S.); (N.N.)
| | - Nurgul Nurmukhanbetova
- Department of Chemistry and Biotechnology, Sh. Ualikhanov University, 020000 Kokshetau, Kazakhstan; (S.S.); (N.N.)
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3
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Slávik P, Torrisi J, Jurček P, Sokolov J, Šindelář V. Synthesis of Enantiomerically Pure Bambus[6]urils Utilizing Orthogonal Protection of Glycolurils. J Org Chem 2023; 88:11514-11522. [PMID: 37505936 PMCID: PMC10442914 DOI: 10.1021/acs.joc.3c00667] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Indexed: 07/30/2023]
Abstract
A general strategy for the synthesis of 2N,4N'-disubstituted glycoluril enantiomers on a multigram scale using orthogonal protection is reported. The use of these glycolurils is demonstrated in the synthesis of enantiomerically pure bambus[6]uril macrocycles. Moreover, the deprotection of (S)-1-phenylethyl substituents on the macrocycle was achieved, opening access to various chiral bambus[6]urils via post-macrocyclization modification strategy.
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Affiliation(s)
- Petr Slávik
- Department
of Chemistry, Faculty of Science, Masaryk
University, 625 00 Brno, Czech
Republic
- RECETOX,
Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
| | - Jacopo Torrisi
- Department
of Chemistry, Faculty of Science, Masaryk
University, 625 00 Brno, Czech
Republic
- RECETOX,
Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
| | - Pia Jurček
- Department
of Chemistry, Faculty of Science, Masaryk
University, 625 00 Brno, Czech
Republic
- RECETOX,
Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
| | - Jan Sokolov
- Department
of Chemistry, Faculty of Science, Masaryk
University, 625 00 Brno, Czech
Republic
- RECETOX,
Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
| | - Vladimír Šindelář
- Department
of Chemistry, Faculty of Science, Masaryk
University, 625 00 Brno, Czech
Republic
- RECETOX,
Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
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Marchenko E, Luchsheva V, Baigonakova G, Bakibaev A, Vorozhtsov A. Functionalization of the Surface of Porous Nickel-Titanium Alloy with Macrocyclic Compounds. MATERIALS (BASEL, SWITZERLAND) 2022; 16:66. [PMID: 36614409 PMCID: PMC9821612 DOI: 10.3390/ma16010066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 11/22/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
For the first time, we performed functionalization of the surface of porous titanium nickelide alloys with bambusuril[6]-based macrocyclic compounds by different methods in order to provide the basis for saturation with therapeutic agents to impart antibacterial activity and accelerate its osteogenesis. It has been shown for the first time that the vacuum modification method is preferable for bambusuril deposition, since it provides a uniform deposition of organic matter on both the outer and inner surfaces of the pores. The effect of bambusuril deposition methods on the continuity, structure, and cytocompatibility of the porous titanium nickelide surface was evaluated. In vitro tests proved high biocompatibility and low toxicity of porous TiNi treated with BU[6] under vacuum. The SEM study of the structure of the surface layer of TiNi modified with BU[6] under the vacuum method showed that BU[6] agglomerates are uniformly deposited on the inner and outer surfaces of TiNi pores, which will provide an even saturation of BU[6] cavities with various pharmaceuticals, including antibiotics and inhibitors.
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Bansagi J, Wilson-Konderka C, Debrauwer V, Narayanan P, Batey RA. N-Alkyl Carbamoylimidazoles as Isocyanate Equivalents: Exploration of the Reaction Scope for the Synthesis of Ureas, Hydantoins, Carbamates, Thiocarbamates, and Oxazolidinones. J Org Chem 2022; 87:11329-11349. [PMID: 35968929 DOI: 10.1021/acs.joc.2c00803] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction of the HCl or trifluoroacetic acid salts of primary amines with carbonyldiimidazole (CDI) is shown to be a preparatively useful method for forming monosubstituted carbamoylimidazoles (28 examples) without the formation of symmetrical urea side products. The utility of these air- and water-stable crystalline carbamoylimidazole reagents was demonstrated by their reactions as blocked or masked isocyanate equivalents. Reaction with various classes of nucleophiles provides access to useful functional groups including ureas, carbamates, thiocarbamates, hydantoins, and oxazolidinones. A parallel synthesis library of 30 ureas was generated by the reaction of 6× carbamoylimidazole intermediates with 5× amines and triethylamine. The unsymmetrical urea-containing natural products macaurea A and pygmaniline A were also prepared in good yields (95% over four steps and 79% over three steps, respectively) using this approach. The reaction of carbamoylimidazoles with amino acid methyl esters followed by microwave irradiation in aqueous media gives hydantoins in high yields, further demonstrating the ability of carbamoylimidazoles as isocyanate surrogates. Three hydantoin-containing natural products including macahydantoin D and meyeniihydantoin A were prepared in nearly quantitative yields from proline methyl ester and carbamoylimidazoles. The reaction of carbamoylimidazoles with alcohols and thiols under basic conditions affords carbamates and thiocarbamates, respectively, in good yields. Lastly, a method for the preparation of chiral oxazolidinone heterocycles from chiral epoxy alcohols is demonstrated using a double displacement approach. The reactions occur with high regio- and stereoselectivity (dr ≥ 15:1 by 1H NMR) via a domino attack of the corresponding alkoxides with carbamoylimidazoles followed by an intramolecular attack of the in situ generated urea anion at the proximal position of the epoxide group.
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Affiliation(s)
- Jazmin Bansagi
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, Canada, M5S 3H6
| | - Cody Wilson-Konderka
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, Canada, M5S 3H6
| | - Vincent Debrauwer
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, Canada, M5S 3H6
| | - Pournima Narayanan
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, Canada, M5S 3H6
| | - Robert A Batey
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, Canada, M5S 3H6
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De Simone NA, Chvojka M, Lapešová J, Martínez-Crespo L, Slávik P, Sokolov J, Butler SJ, Valkenier H, Šindelář V. Monofunctionalized Fluorinated Bambusurils and Their Conjugates for Anion Transport and Extraction. J Org Chem 2022; 87:9829-9838. [PMID: 35862261 DOI: 10.1021/acs.joc.2c00870] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Bambusurils are macrocyclic molecules that are known for their high binding affinity and selectivity toward anions. Here, we present the preparation of two bambusurils bearing fluorinated substituents and one carboxylic function. These monofunctionalized bambusurils were conjugated with crown ether and cholesterol units. The resulting conjugates were successfully tested in liquid-liquid extraction of inorganic salts and chloride/bicarbonate transport across lipid bilayers.
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Affiliation(s)
| | - Matúš Chvojka
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic.,RECETOX, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic.,Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Université libre de Bruxelles, Avenue F.D. Roosevelt 50, CP 165/64, Brussels 1050, Belgium
| | - Jana Lapešová
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic
| | - Luis Martínez-Crespo
- Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Université libre de Bruxelles, Avenue F.D. Roosevelt 50, CP 165/64, Brussels 1050, Belgium
| | - Petr Slávik
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic
| | - Jan Sokolov
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic
| | - Stephen J Butler
- Department of Chemistry, Loughborough University, Epinal Way, Loughborough LE11 3TU, U.K
| | - Hennie Valkenier
- Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Université libre de Bruxelles, Avenue F.D. Roosevelt 50, CP 165/64, Brussels 1050, Belgium
| | - Vladimír Šindelář
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic
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Abstract
The construction of chemical sensors that can distinguish molecular chirality has attracted increasing attention in recent years due to the significance of chiral organic molecules and the importance of detecting their absolute configuration and chiroptical purity. The supramolecular chirality sensing strategy has shown promising potential due to its advantages of high throughput, sensitivity, and fast chirality detection. This review focuses on chirality sensors based on macrocyclic compounds. Macrocyclic chirality sensors usually have inherent complexing ability towards certain chiral guests, which combined with the signal output components, could offer many unique advantages/properties compared to traditional chiral sensors. Chirality sensing based on macrocyclic sensors has shown rapid progress in recent years. This review summarizes recent advances in chirality sensing based on both achiral and chiral macrocyclic compounds, especially newly emerged macrocyclic molecules.
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Hamacek J, Sokolov J, Šindelář V. Bambusuril Macrocycles as Mediators of Supramolecular Interactions: Application to the Europium Cage Helicate. Chemistry 2021; 27:5492-5497. [PMID: 33442893 DOI: 10.1002/chem.202005140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Indexed: 11/07/2022]
Abstract
Herein, it is shown how bambusurils can be used for tuning and/or characterizing supramolecular systems. Indeed, the addition of bambusurils as anion scavengers to metal-mediated self-assemblies allows manipulation of the subtle equilibria in the given system. This is demonstrated for the case of the tetranuclear europium helical cage, which is well suited to different applications. Among the reported results, experimental evidence is provided showing that perchlorate and triflate anions act as a molecular template for the cage assembly. The complexation of inorganic anions with neutral bambusurils resulted in bulky non-coordinating counterions that may trigger the self-assembly process or stimulate specific interactions between components. Moreover, bambusuril was able to selectively remove coordinating nitrates from the mixture with non-coordinating anions, enabling the regeneration of the helical cage.
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Affiliation(s)
- Josef Hamacek
- Centre de Biophysique Moléculaire (CBM), CNRS UPR4301, Rue Charles Sadron, 45071, Orléans, France
| | - Jan Sokolov
- Department of Chemistry and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 62500, Brno, Czech Republic
| | - Vladimír Šindelář
- Department of Chemistry and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 62500, Brno, Czech Republic
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