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Wlodkowic D, Czerw A, Karakiewicz B, Deptała A. Recent progress in cytometric technologies and their applications in ecotoxicology and environmental risk assessment. Cytometry A 2021; 101:203-219. [PMID: 34652065 DOI: 10.1002/cyto.a.24508] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 09/20/2021] [Accepted: 09/30/2021] [Indexed: 12/14/2022]
Abstract
Environmental toxicology focuses on identifying and predicting impact of potentially toxic anthropogenic chemicals on biosphere at various levels of biological organization. Presently there is a significant drive to gain deeper understanding of cellular and sub-cellular mechanisms of ecotoxicity. Most notable is increased focus on elucidation of cellular-response networks, interactomes, and greater implementation of cell-based biotests using high-throughput procedures, while at the same time decreasing the reliance on standard animal models used in ecotoxicity testing. This is aimed at discovery and interpretation of molecular pathways of ecotoxicity at large scale. In this regard, the applications of cytometry are perhaps one of the most fundamental prospective analytical tools for the next generation and high-throughput ecotoxicology research. The diversity of this modern technology spans flow, laser-scanning, imaging, and more recently, Raman as well as mass cytometry. The cornerstone advantages of cytometry include the possibility of multi-parameter measurements, gating and rapid analysis. Cytometry overcomes, thus, limitations of traditional bulk techniques such as spectrophotometry or gel-based techniques that average the results from pooled cell populations or small model organisms. Novel technologies such as cell imaging in flow, laser scanning cytometry, as well as mass cytometry provide innovative and tremendously powerful capabilities to analyze cells, tissues as well as to perform in situ analysis of small model organisms. In this review, we outline cytometry as a tremendously diverse field that is still vastly underutilized and often largely unknown in environmental sciences. The main motivation of this work is to highlight the potential and wide-reaching applications of cytometry in ecotoxicology, guide environmental scientists in the technological aspects as well as popularize its broader adoption in environmental risk assessment.
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Affiliation(s)
- Donald Wlodkowic
- The Neurotox Lab, School of Science, RMIT University, Melbourne, Victoria, Australia
| | - Aleksandra Czerw
- Department of Health Economics and Medical Law, Faculty of Health Sciences, Medical University of Warsaw, Warsaw, Poland
| | - Beata Karakiewicz
- Subdepartment of Social Medicine and Public Health, Department of Social Medicine, Pomeranian Medical University, Szczecin, Poland
| | - Andrzej Deptała
- Department of Cancer Prevention. Faculty of Health Sciences, Medical University of Warsaw, Warsaw, Poland
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Johnson P, Moriwaki M, Johnson J. Rapid, sensitive detection of bacteria in platelet samples with Fountain Flow Cytometry. J Clin Lab Anal 2017; 31:e22115. [PMID: 28177537 PMCID: PMC6817245 DOI: 10.1002/jcla.22115] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Accepted: 11/21/2016] [Indexed: 11/08/2022] Open
Abstract
BACKGROUND There is a current need to develop a technique for bacterial screening of platelet donations that is more rapid, sensitive, and economical than alternatives. The objective of this research was to perform a pilot test of the viability of Fountain Flow Cytometry (FFC), for the rapid and sensitive detection of bacteria in platelet donations. METHODS Platelet samples were inoculated with serial dilutions of five selected bacterial strains. Samples were then centrifuged, reconstituted in buffer, and stained with a live/dead bacterial stain cocktail. The resulting aqueous sample was measured by FFC, in which the sample passed as a stream in front of an LED, which excited the fluorescent labels. Fluorescence was detected with a digital camera as the sample flowed toward it. RESULTS Fountain Flow Cytometry enumeration yielded results that were linear with bacterial concentration, having an R2 of ≥0.98 with a detection efficiency of 92%±3%. Measurements of uninoculated samples showed a false-positive detection rate at ~400 colony forming units (CFU)/mL. Detection of bacterial concentrations in platelets above this threshold can be made in ~15 minutes, including sample preparation time. CONCLUSION This pilot study supports the efficacy of FFC for the rapid and sensitive screening of platelet donations for bacteria.
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Affiliation(s)
- Paul Johnson
- Department of Physics and AstronomyUniversity of WyomingLaramieWYUSA
- SoftRay IncLaramieWYUSA
| | - Mika Moriwaki
- Molecular Medicine ProgramUniversity of UtahSalt Lake CityUTUSA
| | - Joseph Johnson
- College of Osteopathic Medicine of the PacificWestern University of Health SciencesPomonaCAUSA
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Zhu F, Skommer J, Huang Y, Akagi J, Adams D, Levin M, Hall CJ, Crosier PS, Wlodkowic D. Fishing on chips: up-and-coming technological advances in analysis of zebrafish and Xenopus embryos. Cytometry A 2014; 85:921-32. [PMID: 25287981 PMCID: PMC10472801 DOI: 10.1002/cyto.a.22571] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Revised: 07/31/2014] [Accepted: 08/29/2014] [Indexed: 12/29/2022]
Abstract
Biotests performed on small vertebrate model organisms provide significant investigative advantages as compared with bioassays that employ cell lines, isolated primary cells, or tissue samples. The main advantage offered by whole-organism approaches is that the effects under study occur in the context of intact physiological milieu, with all its intercellular and multisystem interactions. The gap between the high-throughput cell-based in vitro assays and low-throughput, disproportionally expensive and ethically controversial mammal in vivo tests can be closed by small model organisms such as zebrafish or Xenopus. The optical transparency of their tissues, the ease of genetic manipulation and straightforward husbandry, explain the growing popularity of these model organisms. Nevertheless, despite the potential for miniaturization, automation and subsequent increase in throughput of experimental setups, the manipulation, dispensing and analysis of living fish and frog embryos remain labor-intensive. Recently, a new generation of miniaturized chip-based devices have been developed for zebrafish and Xenopus embryo on-chip culture and experimentation. In this work, we review the critical developments in the field of Lab-on-a-Chip devices designed to alleviate the limits of traditional platforms for studies on zebrafish and clawed frog embryo and larvae. © 2014 International Society for Advancement of Cytometry.
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Affiliation(s)
- Feng Zhu
- School of Applied Sciences, RMIT University, Melbourne, Australia
| | - Joanna Skommer
- School of Applied Sciences, RMIT University, Melbourne, Australia
| | - Yushi Huang
- School of Applied Sciences, RMIT University, Melbourne, Australia
| | - Jin Akagi
- School of Applied Sciences, RMIT University, Melbourne, Australia
| | - Dany Adams
- Department of Biology and Tufts Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts
| | - Michael Levin
- Department of Biology and Tufts Center for Regenerative and Developmental Biology, Tufts University, Medford, Massachusetts
| | - Chris J. Hall
- Department of Molecular Medicine and Pathology, University of Auckland, 1142, New Zealand
| | - Philip S. Crosier
- Department of Molecular Medicine and Pathology, University of Auckland, 1142, New Zealand
| | - Donald Wlodkowic
- School of Applied Sciences, RMIT University, Melbourne, Australia
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Golberg A, Linshiz G, Kravets I, Stawski N, Hillson NJ, Yarmush ML, Marks RS, Konry T. Cloud-enabled microscopy and droplet microfluidic platform for specific detection of Escherichia coli in water. PLoS One 2014; 9:e86341. [PMID: 24475107 PMCID: PMC3903517 DOI: 10.1371/journal.pone.0086341] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2013] [Accepted: 12/12/2013] [Indexed: 12/13/2022] Open
Abstract
We report an all-in-one platform – ScanDrop – for the rapid and specific capture, detection, and identification of bacteria in drinking water. The ScanDrop platform integrates droplet microfluidics, a portable imaging system, and cloud-based control software and data storage. The cloud-based control software and data storage enables robotic image acquisition, remote image processing, and rapid data sharing. These features form a “cloud” network for water quality monitoring. We have demonstrated the capability of ScanDrop to perform water quality monitoring via the detection of an indicator coliform bacterium, Escherichia coli, in drinking water contaminated with feces. Magnetic beads conjugated with antibodies to E. coli antigen were used to selectively capture and isolate specific bacteria from water samples. The bead-captured bacteria were co-encapsulated in pico-liter droplets with fluorescently-labeled anti-E. coli antibodies, and imaged with an automated custom designed fluorescence microscope. The entire water quality diagnostic process required 8 hours from sample collection to online-accessible results compared with 2–4 days for other currently available standard detection methods.
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Affiliation(s)
- Alexander Golberg
- Centre for Engineering in Medicine, Massachusetts General Hospital, Harvard Medical School, Shriners Burns Institute, Boston, Massachusetts, United States of America
| | - Gregory Linshiz
- Fuels Synthesis Division, Joint BioEnergy Institute, Emeryville, California, United States of America ; Physical BioSciences Division, Lawrence Berkeley National Labs, Berkeley, California, United States of America ; DOE Joint Genome Institute, Walnut Creek, California, United States of America
| | - Ilia Kravets
- Department of Computer Science, Technion Institute of Technology, Haifa, Israel
| | - Nina Stawski
- Fuels Synthesis Division, Joint BioEnergy Institute, Emeryville, California, United States of America ; Physical BioSciences Division, Lawrence Berkeley National Labs, Berkeley, California, United States of America
| | - Nathan J Hillson
- Fuels Synthesis Division, Joint BioEnergy Institute, Emeryville, California, United States of America ; Physical BioSciences Division, Lawrence Berkeley National Labs, Berkeley, California, United States of America ; DOE Joint Genome Institute, Walnut Creek, California, United States of America
| | - Martin L Yarmush
- Centre for Engineering in Medicine, Massachusetts General Hospital, Harvard Medical School, Shriners Burns Institute, Boston, Massachusetts, United States of America ; Department of Biomedical Engineering, Rutgers University, New Jersey, United States of America
| | - Robert S Marks
- Department of Biotechnology Engineering, The National Institute of Biotechnology in Negev, Ben Gurion University, Beer-Sheva, Israel ; School of Materials Science and Engineering, Nanyang Technological University, Singapore ; NRF CREATE program for Nanomaterials in Energy and Water Management, Singapore
| | - Tania Konry
- Department of Pharmaceutical Sciences, School of Pharmacy Bouvé College of Health Sciences, Northeastern University, Boston, Massachusetts, United States of America
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Ducret A, Chabalier M, Dukan S. Characterization and resuscitation of 'non-culturable' cells of Legionella pneumophila. BMC Microbiol 2014; 14:3. [PMID: 24383402 PMCID: PMC3882098 DOI: 10.1186/1471-2180-14-3] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Accepted: 12/02/2013] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Legionella pneumophila is a waterborne pathogen responsible for Legionnaires' disease, an infection which can lead to potentially fatal pneumonia. After disinfection, L. pneumophila has been detected, like many other bacteria, in a "viable but non culturable" state (VBNC). The physiological significance of the VBNC state is unclear and controversial: it could be an adaptive response favoring long-term survival; or the consequence of cellular deterioration which, despite maintenance of certain features of viable cells, leads to death; or an injured state leading to an artificial loss of culturability during the plating procedure. VBNC cells have been found to be resuscitated by contact with amoebae. RESULTS We used quantitative microscopic analysis, to investigate this "resuscitation" phenomenon in L. pneumophila in a model involving amending solid plating media with ROS scavengers (pyruvate or glutamate), and co-culture with amoebae. Our results suggest that the restoration observed in the presence of pyruvate and glutamate may be mostly due to the capacity of these molecules to help the injured cells to recover after a stress. We report evidence that this extracellular signal leads to a transition from a not-culturable form to a culturable form of L. pneumophila, providing a technique for recovering virulent and previously uncultivated forms of L. pneumophila. CONCLUSION These new media could be used to reduce the risk of underestimation of counts of virulent of L. pneumophila cells in environmental samples.
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Affiliation(s)
- Adrien Ducret
- Aix Marseille Université, Laboratoire de Chimie Bactérienne (UMR7283), Institut de Microbiologie de la Méditerranée - CNRS, 31, Chemin Joseph Aiguier, 13402 Marseille, France
- Present address: Department of Biology, Indiana University, 1001 East 3rd Street, Bloomington, IN 47405 USA
| | - Maïalène Chabalier
- Aix Marseille Université, Laboratoire de Chimie Bactérienne (UMR7283), Institut de Microbiologie de la Méditerranée - CNRS, 31, Chemin Joseph Aiguier, 13402 Marseille, France
| | - Sam Dukan
- Aix Marseille Université, Laboratoire de Chimie Bactérienne (UMR7283), Institut de Microbiologie de la Méditerranée - CNRS, 31, Chemin Joseph Aiguier, 13402 Marseille, France
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Ducret A, Dukan S. Single-cell analysis of cell viability after a biocide treatment unveils an absence of positive correlation between two commonly used viability markers. Microbiologyopen 2013; 2:123-9. [PMID: 23281341 PMCID: PMC3584218 DOI: 10.1002/mbo3.62] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2012] [Revised: 11/13/2012] [Accepted: 11/19/2012] [Indexed: 11/07/2022] Open
Abstract
Discrimination among viable/active or dead/inactive cells in a microbial community is a vital question to address issues on ecological microbiology or microbiological quality control. It is commonly assumed that metabolically active cells (ChemchromeV6 [CV6] procedure) correspond to viable cells (direct viable count procedure [DVC]), although this assumption has never been demonstrated and is therefore a matter of debate. Indeed, simultaneous determination of cell viability and metabolic activity has never been performed on the same cells. Here, we developed a microfluidic device to investigate the viability and the metabolic activity of Escherichia coli cells at single-cell level. Cells were immobilized in a flow chamber in which different solutions were sequentially injected according to different scenarios. By using time-lapse microscopy combined with automated tracking procedures, we first successfully assessed the ability of cells to divide and their metabolic activity at single-cell level. Applying these two procedures on the same cells after a hypochlorous acid (HOCl) treatment, we showed that the ability of cells to divide and their metabolic activity were anticorrelated. These results indicate that the relation between CV6 uptake and cell viability may be partially incorrect. Care must be taken in using the terms "CV6-positive" and "viable" synonymously.
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Affiliation(s)
- Adrien Ducret
- Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée-Université Aix-Marseille, CNRS UMR7283, 31 Chemin Joseph Aiguier, Marseille, 13009, France
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Johnson P. Fountain flow cytometry. CURRENT PROTOCOLS IN CYTOMETRY 2012; Chapter 1:Unit 1.26.1-14. [PMID: 22470152 DOI: 10.1002/0471142956.cy0126s60] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Fountain Flow Cytometry (FFC) is a simple and inexpensive technology that is adaptable to situations requiring detection and enumeration of cells/organisms at low concentrations, but is limited to particles of relatively high fluorescence intensity. This work presents the basic physics behind the novel scheme Fountain Flow Cytometry employs for the detection of target particles, a hybrid of conventional flow cytometry and video epifluorescence microscopy. The method is based on LED-induced fluorescence of labeled particles and requires no filtration step. Unlike conventional flow cytometry, the resulting fluorescence is measured with a digital camera as the measured sample flows toward the camera along the optical axis. An automated target particle recognition and enumeration computer program, Biocount, is used to count particles. FFC allows for detection of target particles in transparent and translucent fluids, such as environmental water, blood, and beverages. In addition, FFC can be used for detection of target particles in the presence of high photometric background, including unbound fluorescent dye. This facilitates use of the technique in situations where cells are unwashed. Current applications extend, but are not limited to, particles from µm-size bacteria to multi-millimeter-sized multicellular organisms.
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Wlodkowic D, Khoshmanesh K, Akagi J, Williams DE, Cooper JM. Wormometry-on-a-chip: Innovative technologies for in situ analysis of small multicellular organisms. Cytometry A 2011; 79:799-813. [PMID: 21548078 DOI: 10.1002/cyto.a.21070] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2011] [Revised: 03/09/2011] [Accepted: 03/30/2011] [Indexed: 12/12/2022]
Abstract
Small multicellular organisms such as nematodes, fruit flies, clawed frogs, and zebrafish are emerging models for an increasing number of biomedical and environmental studies. They offer substantial advantages over cell lines and isolated tissues, providing analysis under normal physiological milieu of the whole organism. Many bioassays performed on these alternative animal models mirror with a high level of accuracy those performed on inherently low-throughput, costly, and ethically controversial mammalian models of human disease. Analysis of small model organisms in a high-throughput and high-content manner is, however, still a challenging task not easily susceptible to laboratory automation. In this context, recent advances in photonics, electronics, as well as material sciences have facilitated the emergence of miniaturized bioanalytical systems collectively known as Lab-on-a-Chip (LOC). These technologies combine micro- and nanoscale sciences, allowing the application of laminar fluid flow at ultralow volumes in spatially confined chip-based circuitry. LOC technologies are particularly advantageous for the development of a wide array of automated functionalities. The present work outlines the development of innovative miniaturized chip-based devices for the in situ analysis of small model organisms. We also introduce a new term "wormometry" to collectively distinguish these up-and-coming chip-based technologies that go far beyond the conventional meaning of the term "cytometry."
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Affiliation(s)
- Donald Wlodkowic
- Department of Chemistry and MacDiarmid Institute for Advanced Materials and Nanotechnology, University of Auckland, Auckland, 1142, New Zealand.
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Fini JB, Pallud-Mothré S, Le Mével S, Palmier K, Havens CM, Le Brun M, Mataix V, Lemkine GF, Demeneix BA, Turque N, Johnson PE. An innovative continuous flow system for monitoring heavy metal pollution in water using transgenic Xenopus laevis tadpoles. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2009; 43:8895-8900. [PMID: 19943663 DOI: 10.1021/es9008954] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
While numerous detection methods exist for environmental heavy metal monitoring, easy-to-use technologies combining rapidity with in vivo measurements are lacking. Multiwell systems exploiting transgenic tadpoles are ideal but require time-consuming placement of individuals in wells. We developed a real-time flow-through system, based on Fountain Flow cytometry, which measures in situ contaminant-induced fluorescence in transgenic amphibian larvae immersed in water samples. The system maintains the advantages of transgenic amphibians, but requires minimal human intervention. Portable and self-contained, it allows on-site measurements. Optimization exploited a transgenic Xenopus laevis bearing a chimeric gene with metal responsive elements fused to eGFP. The transgene was selectively induced by 1 microM Zn(2+). Using this tadpole we show the continuous flow method to be as rapid and sensitive as image analysis. Flow-through readings thus accelerate the overall process of data acquisition and render fluorescent monitoring of tadpoles suitable for on-site tracking of heavy metal pollution.
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Affiliation(s)
- Jean-Baptiste Fini
- UMR CNRS 7221, Evolution des Regulations Endocriniennes, Departement Regulations, Developpement et Diversite Moleculaire, Museum National d'Histoire Naturelle, 75231 Paris, France
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Johnson PE, Deromedi AJ, Lebaron P, Catala P, Havens C, Pougnard C. High throughput, real-time detection of Naegleria lovaniensis in natural river water using LED-illuminated Fountain FlowTMCytometry. J Appl Microbiol 2007; 103:700-10. [PMID: 17714404 DOI: 10.1111/j.1365-2672.2007.03307.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AIMS To test Fountain Flow Cytometry (FFC) for the rapid and sensitive detection of Naegleria lovaniensis amoebae (an analogue for Naegleria fowleri) in natural river waters. METHODS AND RESULTS Samples were incubated with one of two fluorescent labels to facilitate detection: ChemChrome V6, a viability indicator, and an R-phycoerytherin (RPE) immunolabel to detect N. lovaniensis specifically. The resulting aqueous sample was passed as a stream in front of a light-emitting diode, which excited the fluorescent labels. The fluorescence was detected with a digital camera as the sample flowed toward the imager. Detections of N. lovaniensis were made in inoculated samples of natural water from eight rivers in France and the United States. FFC enumeration yielded results that are consistent with other counting methods: solid-phase cytometry, flow cytometry, and hemocytometry, down to concentrations of 0.06 amoebae ml(-1), using a flow rate of 15 ml min(-1). CONCLUSIONS This study supports the efficacy of using FFC for the detection of viable protozoa in natural waters and indicates that use of RPE illuminated at 530 nm and detected at 585 nm provides a satisfactory means of attenuating background. SIGNIFICANCE AND IMPACT OF THE STUDY Because of the severe global public health issues with drinking water and sanitation, there is an urgent need to develop a technique for the real-time detection of viable pathogens in environmental samples at low concentrations. FFC addresses this need.
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Affiliation(s)
- P E Johnson
- Department of Physics and Astronomy, University of Wyoming, Laramie, WY 82070, USA.
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Müller S. Cytomics reaches microbiology—Population heterogeneity on the protein level caused by chemical stress. Cytometry A 2007; 73:3-4. [DOI: 10.1002/cyto.a.20498] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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