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De Castro F, Stefàno E, De Luca E, Benedetti M, Fanizzi FP. Platinum-Nucleos(t)ide Compounds as Possible Antimetabolites for Antitumor/Antiviral Therapy: Properties and Perspectives. Pharmaceutics 2023; 15:pharmaceutics15030941. [PMID: 36986802 PMCID: PMC10058173 DOI: 10.3390/pharmaceutics15030941] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/06/2023] [Accepted: 03/12/2023] [Indexed: 03/16/2023] Open
Abstract
Nucleoside analogues (NAs) are a family of compounds which include a variety of purine and pyrimidine derivatives, widely used as anticancer and antiviral agents. For their ability to compete with physiological nucleosides, NAs act as antimetabolites exerting their activity by interfering with the synthesis of nucleic acids. Much progress in the comprehension of their molecular mechanisms has been made, including providing new strategies for potentiating anticancer/antiviral activity. Among these strategies, new platinum-NAs showing a good potential to improve the therapeutic indices of NAs have been synthesized and studied. This short review aims to describe the properties and future perspectives of platinum-NAs, proposing these complexes as a new class of antimetabolites.
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Ondar EE, Polynski MV, Ananikov VP. Predicting 195 Pt NMR Chemical Shifts in Water-Soluble Inorganic/Organometallic Complexes with a Fast and Simple Protocol Combining Semiempirical Modeling and Machine Learning. Chemphyschem 2023:e202200940. [PMID: 36806426 DOI: 10.1002/cphc.202200940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 02/20/2023] [Accepted: 02/20/2023] [Indexed: 02/23/2023]
Abstract
Water-soluble Pt complexes are the key components in medicinal chemistry and catalysis. The well-known cisplatin family of anticancer drugs and industrial hydrosylilation catalysts are two leading examples. On the molecular level, the activity mechanisms of such complexes mostly involve changes in the Pt coordination sphere. Using 195 Pt NMR spectroscopy for operando monitoring would be a valuable tool for uncovering the activity mechanisms; however, reliable approaches for the rapid correlation of Pt complex structure with 195 Pt chemical shifts are very challenging and not available for everyday research practice. While NMR shielding is a response property, molecular 3D structure determines NMR spectra, as widely known, which allows us to build up 3D structure to 195 Pt chemical shift correlations. Accordingly, we present a new workflow for the determination of lowest-energy configurational/conformational isomers based on the GFN2-xTB semiempirical method and prediction of corresponding chemical shifts with a Machine Learning (ML) model tuned for Pt complexes. The workflow was designed for the prediction of 195 Pt chemical shifts of water-soluble Pt(II) and Pt(IV) anionic, neutral, and cationic complexes with halide, NO2 - , (di)amino, and (di)carboxylate ligands with chemical shift values ranging from -6293 to 7090 ppm. The model offered an accuracy (normalized root-mean-square deviation/RMSD) of 1.08 %/145.02 ppm on the held-out test set.
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Affiliation(s)
- Evgeniia E Ondar
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
| | - Mikhail V Polynski
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia.,Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences, 26 Azatutyan Ave, 0014, Yerevan, Armenia
| | - Valentine P Ananikov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
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Benedetti M, De Castro F, Papadia P, Antonucci D, Fanizzi FP. 195
Pt and
15
N NMR Data in Square Planar Platinum(II) Complexes of the Type [Pt(NH
3
)
a
X
b
]
n
(X
b
= Combination of Halides): “
NMR Effective Molecular Radius
” of Coordinated Ammonia. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000474] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Michele Benedetti
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), Università del Salento Via Monteroni 73100 Lecce Italy
| | - Federica De Castro
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), Università del Salento Via Monteroni 73100 Lecce Italy
| | - Paride Papadia
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), Università del Salento Via Monteroni 73100 Lecce Italy
| | - Daniela Antonucci
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), Università del Salento Via Monteroni 73100 Lecce Italy
| | - Francesco P. Fanizzi
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), Università del Salento Via Monteroni 73100 Lecce Italy
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Benedetti M, De Castro F, Ciccarese A, Fanizzi FP. Is hydrogen electronegativity higher than Pauling’s value? New clues from the 13C and 29Si NMR chemical shifts of [CHF 3] and [SiHF 3] molecules. PURE APPL CHEM 2019. [DOI: 10.1515/pac-2019-0202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractWe previously demonstrated that the δ NMR chemical shift of central NMR active atoms (A), in simple halido [AXn] (A=C, Si, Ge, Sn, Pb, Pt; Xn = combination of n halides, n = 4 or 6) derivatives, could be directly related to X radii overall sum, Σ(rL). Further correlation have also been observed for tetrahedral [AX4] (A=C, Si; X4 = combination of four halides) compounds where the X Pauling electronegativities sum,Σ(χLPau),$\Sigma (\chi _L^{{\rm{Pau}}}),$exceeds a specific value (≈12.4). In this work, we focused on these latter systems considering the H vs. X substitution. The analysis of the literature reported δ(13C) and δ(29Si) NMR chemical shift for the mono hydrogenated derivatives and in particular for [CHF3] and [SiHF3], characterized by the lowest Σ(rL) and the highestΣ(χLPau),$\Sigma (\chi _L^{{\rm{Pau}}}),$suggests a revised value for the H electronegativity ranking with respect to Pauling’s.
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Affiliation(s)
- Michele Benedetti
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni, I-73100 Lecce , Italy , Tel.: +39 0832299264, Fax: +39 0832 298626
| | - Federica De Castro
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy
| | - Antonella Ciccarese
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy
| | - Francesco Paolo Fanizzi
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy , Tel.: +39 0832299265, Fax: +39 0832 298626
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Benedetti M, De Castro F, Fanizzi FP. Pauling Electronegativity On/Off Effects Assessed by 13C and 29Si NMR Spectroscopic Analysis. Chemistry 2017; 23:16877-16884. [DOI: 10.1002/chem.201703934] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Michele Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
| | - Federica De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
| | - Francesco P. Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
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Benedetti M, De Castro F, Lamacchia V, Pacifico C, Natile G, Fanizzi FP. Insertion of terminal alkyne into Pt-N bond of the square planar [PtI 2(Me 2phen)] complex. Dalton Trans 2017; 46:15819-15826. [PMID: 29099524 DOI: 10.1039/c7dt03644b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reactivity of [PtX2(Me2phen)] complexes (X = Cl, Br, I; Me2phen = 2,9-dimethyl-1,10-phenanthroline) with terminal alkynes has been investigated. Although the dichlorido species [PtCl2(Me2phen)] exhibits negligible reactivity, the bromido and iodido derivatives lead in short time to the formation of five-coordinate Pt(ii) complexes of the type [PtX2(Me2phen)(η2-CH[triple bond, length as m-dash]CR)] (X = Br, I; R = Ph, n-Bu), in equilibrium with the starting reagents. Similar to analogous complexes with simple acetylene, the five coordinate species can also undergo dissociation of an halido ligand and formation of the transient square-planar cationic species [PtX(Me2phen)(η2-CH[triple bond, length as m-dash]CR)]+. This latter can further evolve to give an unusual, sparingly soluble square planar product where the former terminal alkyne is converted into a :C[double bond, length as m-dash]C(H)(R) moiety with the α-carbon bridging the Pt(ii) core with one of the two N-donors of coordinated Me2phen. The final product [PtX2{κ2-N,C-(Z)-N[combining low line]1-N10-C[combining low line][double bond, length as m-dash]C(H)(R)}] (N1-N10 = 2,9-dimethyl-1,10-phenanthroline; X = Br, I) contains a Pt-N-C-C-N-C six-membered chelate ring in a square planar Pt(ii) coordination environment.
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Affiliation(s)
- Michele Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
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Benedetti M, De Castro F, Fanizzi FP. 73Ge, 119Sn and 207Pb: general cooperative effects of single atom ligands on the NMR signals observed in tetrahedral [MX nY 4-n] (M = Ge, Sn, Pb; 1 ≤ n ≤ 4; X, Y = Cl, Br, I) coordination compounds of heavier XIV group elements. Dalton Trans 2017; 46:2855-2860. [PMID: 28181618 DOI: 10.1039/c7dt00307b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An inverse linear relationship between 73Ge, 119Sn and 207Pb NMR chemical shifts and the overall sum of ionic radii of coordinated halido ligands has been discovered in tetrahedral [MXnY4-n] (M = Ge, Sn, Pb; 1 ≤ n ≤ 4; X, Y = Cl, Br, I) coordination compounds. This finding is consistent with a previously reported correlation found in octahedral, pentacoordinate and square planar platinum complexes. The effect of the coordinated halido ligands acting on the metal as shielding conducting rings is therefore confirmed also by 73Ge, 119Sn and 207Pb NMR spectroscopy.
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Affiliation(s)
- M Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
| | - F De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
| | - F P Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
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Benedetti M, De Castro F, Ciccarese A, Fanizzi FP. NMR effective radius of hydrogen in XIV group hydrides evaluated by NMR spectroscopy. Dalton Trans 2017; 46:14094-14097. [DOI: 10.1039/c7dt03348f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the [ABrnIm] (A = C, Si, Ge, Sn; n + m = 4) compounds, with the heavier halido ligands bonded to the central IV group elements, the 13C, 29Si, 73Ge and 119Sn NMR chemical shifts were found to be linearly related to the bonded halides ionic radii overall sum, ∑(rh). The 207Pb NMR chemical shift of the unstable [PbH4] hydride could be calculated.
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Affiliation(s)
- M. Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - F. De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - A. Ciccarese
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - F. P. Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
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Ypsilantis K, Tsolis T, Kourtellaris A, Manos MJ, Plakatouras JC, Garoufis A. Synthesis, reactivity and characterization of Pt(ii) complexes with N,N′ chelating ligands; structure and dimethylsulfoxide reactivity relationship. Dalton Trans 2017; 46:1467-1480. [DOI: 10.1039/c6dt04035g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Chelated N-heterocycles can be replaced from the coordination sphere of square planar Pt(ii) complexes by DMSO.
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Affiliation(s)
| | - Theodoros Tsolis
- Department of Chemistry
- University of Ioannina
- GR-45110 Ioannina
- Greece
| | | | - Manolis J. Manos
- Department of Chemistry
- University of Ioannina
- GR-45110 Ioannina
- Greece
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