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Zhao J, Varzhel N, Hokimoto Y, Nakamura T. External Phosphate Binding Triggered Formation of Coordination Bridged Dimer of Macrocyclic Trinuclear Complex. Chemistry 2025; 31:e202500424. [PMID: 39963011 DOI: 10.1002/chem.202500424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2025] [Accepted: 02/18/2025] [Indexed: 03/08/2025]
Abstract
Macrocyclic complexes with spatially-arranged coordination sites have the potential to create unique supramolecular systems that combine the precise switching of self-assembled structures with the coordinative recognition of specific molecules. We now report a macrocyclic trinuclear Zn complex that undergoes a unique dimerization by molecular binding from the outside. The multinuclear complex was synthesized from a trispap ligand, a designed macrocyclic trimer of an N,N,O-type tridentate chelating unit pap. This macrocyclic ligand is capable of fixing the metal centers and retaining their exchangeable coordination sites. The macrocyclic trimer reacts with zinc acetate to form the trinuclear complex, in which the coordination sites of the three zinc atoms are aligned perpendicular to the macrocyclic plane and capped with the acetates. Subsequently, phosphate anion, PO4 3-, coordinates from one side of the macrocycle in a tripodal manner. This phosphate binding produced an electrically-neutral complex moiety with available coordination sites on the other side of the macrocycle which leads to the formation of the coordination-bridged dimer.
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Affiliation(s)
- Jiachen Zhao
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8571, Japan
| | - Nadiia Varzhel
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8571, Japan
- Educational and Scientific Institute of High Technologies, Taras Shevchenko National University of Kyiv, 60 Volodymyrska, Kyiv, 01033, Ukraine
| | - Yuya Hokimoto
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8571, Japan
| | - Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8571, Japan
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Nakamura T, Yano S, Liu YF, Nabeshima T. Formation of a Metallomacrocycle Possessing Nitrogen Donors Assembled in the Cavity and Unique Water Clusters. Inorg Chem 2024; 63:12697-12702. [PMID: 38950409 DOI: 10.1021/acs.inorgchem.4c01542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
2,2'-Bipyridyl (bpy) is widely used as a chelating unit for metal complexation but is not usually considered as a hydrogen-bonding unit. This is because the metal-free bpy units are usually in a transoid conformation, and the two nitrogen lone pairs are pointed to the opposite sides. We now report a metallomacrocycle whose three metal-free bpy units are in a cisoid conformation and are fixed in the cavity. The complexation of nickel(II) only at the salen units of the triangular bpytrisalen ligand produced this rigid and planar macrocycle. Its cavity is surrounded by hydrogen-bond acceptors (N of bpy and O of salen), and it was found that unique pentagonal prism clusters of water molecules templated by the cavity were formed in the crystal. This study has not only increased the variation of the synthetic methodologies of multinuclear complexes but has also provided the structural platform on which multiple bpy units exert hydrogen-bonding functions.
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Affiliation(s)
- Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Syuhei Yano
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Yi-Fu Liu
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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Hokimoto Y, Nakamura T. Synthesis of a macrocyclic oligomer of pyridylbenzoxazole utilizing dynamic covalent bonds and its unsymmetric conversion. Chem Commun (Camb) 2024; 60:1281-1284. [PMID: 38196391 DOI: 10.1039/d3cc06216c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
A new unsymmetric macrocycle was synthesized by an effective and high yield 3-step synthesis, which was composed of macrocyclization, irreversible conversion, and desymmetrization. The dynamic nature of imine bonds as well as selective conversion based on strain release were utilized. Moreover, the unsymmetric macrocycle formed an interesting bivalve-like 2 : 1 complex with zinc.
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Affiliation(s)
- Yuya Hokimoto
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.
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Fedorowicz D, Ślepokura K, Kłak J, Witwicki M, Gregoliński J. Hexa- and octanuclear copper(II) complexes with a tetraeicosaaza amine macrocycle. Dalton Trans 2023; 52:16123-16127. [PMID: 37929621 DOI: 10.1039/d3dt02993j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Abstract
One hexa- and two octanuclear Cu(II) complexes were synthesised from different metal salts and a very large (8 + 8) tetraeicosaaza macrocycle. These nitrate, chloride and sulphate coordination compounds were characterised by taking elemental analysis, spectroscopy, crystallography and magnetic susceptibility measurements. Their crystal structures revealed different interesting coordination modes of Cu(II) cations and nuclearity in these centrosymmetric complexes. For the sulphate complex two different, homo- vs. heterochiral, arrangements of the same macrocycle L3 around the same Cu(II) cations take place.
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Affiliation(s)
- Dominika Fedorowicz
- Faculty of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-283 Wroclaw, Poland.
| | - Katarzyna Ślepokura
- Faculty of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-283 Wroclaw, Poland.
| | - Julia Kłak
- Faculty of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-283 Wroclaw, Poland.
| | - Maciaj Witwicki
- Faculty of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-283 Wroclaw, Poland.
| | - Janusz Gregoliński
- Faculty of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-283 Wroclaw, Poland.
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Nakamura T, Watanabe S. Site-Selective Ligand Bridging among Multiple Internal Coordination Sites of a Metallomacrocycle and Its Conformational Regulation. Inorg Chem 2023; 62:12886-12894. [PMID: 37530452 DOI: 10.1021/acs.inorgchem.3c01571] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Metallomacrocycles with internal coordination sites have a high potential to precisely control the positions of the guest ligands and the overall shape of the assemblies by utilizing the directionality and reversibility of the coordination bonds. However, when such coordinative hosts possess multiple coordination sites, it was difficult to control to which coordination sites the incoming guest ligands bind, because such systems often result in a random, uncontrolled mixture. The metallomacrocycle that we now report, a hexanuclear palladium complex of hexapap possessing six internal coordination sites, can take two different conformations depending on the guests. One is an Alternate conformation, in which six coordination sites of pap alternatively point to Up-Down-Up-Down-Up-Down. The other is a Twisted conformation, in which the coordination sites direct Up-Middle-Down-Up-Middle-Down. Interestingly, linear ditopic α,ω-diamines are captured in three distinct cross-linking modes, and regulations between the two macrocyclic conformations have been realized by the lengths of the diamines. Furthermore, the heteroleptic site-selective bridging of two kinds of diamines has been achieved. It has been demonstrated that a slight difference in the diamine lengths leads to a significant change in the structure and selection of the produced host-guest macrocyclic complexes.
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Affiliation(s)
- Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8571, Ibaraki, Japan
| | - Satoru Watanabe
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8571, Ibaraki, Japan
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Gregoliński J, Ślepokura K, Kłak J, Witwicki M. Multinuclear Ni(II) and Cu(II) complexes of a meso 6 + 6 macrocyclic amine derived from trans-1,2-diaminocyclopentane and 2,6-diformylpyridine. Dalton Trans 2022; 51:9735-9747. [PMID: 35703400 DOI: 10.1039/d2dt01329k] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Four hexanuclear chloride and sulphate Ni(II) and Cu(II) complexes 1, 2, 4 and 5 and one tetranuclear nitrate Cu(II) complex 3 have been synthesised from appropriate metal salts and 6 + 6 octadecaaza macrocyclic ligands. All obtained coordination compounds have been characterised by elemental analysis, spectroscopic methods (ESI MS, NMR and EPR), magnetic susceptibility measurements and X-ray crystallography. Their X-ray crystal structures reveal different coordination modes of metal cations involved in the obtained centro-symmetrical coordination compounds. The conformational folding of the macrocyclic ligand adopted in the respective complexes depends on the number of metal cations bound within the macrocycle but not on their type. The cavities of these multinuclear complexes might be occupied by solvent molecules and counter anions bound by hydrogen bonds or might be empty in the case where the macrocyclic ring of the ligand is squeezed in the middle. All obtained Ni(II) and Cu(II) coordination compounds are paramagnetic. This has been proved by their 1H NMR and EPR spectra and magnetic measurements. Direct current (DC) variable-temperature magnetic susceptibility measurements on the polycrystalline samples of 1-5 were carried out in the temperature range of 1.8-300 K. The magnetic behaviour of 1 and 2 is dominated by the magnetic anisotropy of the nickel(II) ion masking the magnetic interactions between magnetic centres. The magnetic data of 3-5 reveal small antiferromagnetic interactions within the Cu4 and Cu6 units. EPR experiments for 3-5 show, at 9.6 and 34 GHz frequencies, that the predominant contribution to the orbitals occupied by the unpaired electrons in the ground state originates from dx2-y2.
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Affiliation(s)
- Janusz Gregoliński
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Katarzyna Ślepokura
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Julia Kłak
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Maciej Witwicki
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
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Moriya Y, Yamanaka M, Mori K. Synthesis of C3-Symmetric Macrocyclic Triimines from Monomers having Boc-Protected Amine and Formyl Group. CHEM LETT 2022. [DOI: 10.1246/cl.210736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yu Moriya
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
| | - Masahiro Yamanaka
- Department of Chemistry, Faculty of Science, Rikkyo University, 3-34-1 Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Keiji Mori
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
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Nakamura T. Development of Artificial Receptors Based on Assembly of Metal Complex Units and Desymmetrization of Molecular Components. CHEM LETT 2021. [DOI: 10.1246/cl.210418] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Takashi Nakamura
- Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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