1
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Zhou Z, Shao C, Xie J, Xu H, Liu Y, Zhou Y, Liu Z, Zhao Z, Tang Q, Sun K. Genetic polymorphism and phylogenetic analyses of 21 non-CODIS STR loci in a Chinese Han population from Shanghai. Mol Genet Genomic Med 2020; 8:e1083. [PMID: 31814334 PMCID: PMC7005660 DOI: 10.1002/mgg3.1083] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 10/18/2019] [Accepted: 11/15/2019] [Indexed: 01/21/2023] Open
Abstract
BACKGROUND Short tandem repeats (STRs) are essential genetic markers for forensic applications and population estimations; thus the population genetics of STR loci have been extensively studied and discussed. METHODS In the present study, we detected 21 autosomal noncombined DNA index system (non-CODIS) STR loci in a Chinese Han population from Shanghai, calculated their forensic parameters and analyzed their genetic relationships with reported reference populations in mainland China. RESULTS A total of 173 alleles were observed, with corresponding allele frequencies from 0.0020 to 0.5512. The cumulative power of discrimination (CPD) and the cumulative probability of exclusion (CPE) values of the 21 STR loci were 0.999999999999999999997337058271 and 0.99999953732495, respectively. The results of interpopulation differentiation, phylogenetic, multidimensional scaling, and structure analyses indicated a closer genetic relationship of the studied population with Han populations from other regions of China than with other populations. CONCLUSIONS The 21 STR loci exhibited high genetic polymorphism in the studied Shanghai_Han population and could be used for forensic applications and population genetic studies.
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Affiliation(s)
- Zhihan Zhou
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Chengchen Shao
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Jianhui Xie
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Hongmei Xu
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Yidong Liu
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Yueqin Zhou
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Zhiping Liu
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Ziqin Zhao
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Qiqun Tang
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
| | - Kuan Sun
- Department of Forensic MedicineSchool of Basic Medical SciencesFudan UniversityShanghaiChina
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2
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Zhang L, Zhu S, Yang F, Bai X, Yao Y, Li J. Genetic diversity of 23 STR loci in Guangxi Zhuang population and its phylogenetic relationship with 25 other populations. Ann Hum Biol 2019; 46:502-508. [PMID: 31559867 DOI: 10.1080/03014460.2019.1673481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Aim: To estimate genetic diversity of 23 STR loci included in the DNA TyperTM 25 Kit, and evaluate its effectiveness in forensic application.Subjects and methods: A total of 450 (251 males and 179 females) unrelated healthy individuals from Guangxi Zhuang population were amplified with DNA TyperTM 25 Kit, isolated by the 3730 Series Genetic AnalyzerTM, and genotyped using the GeneMapper ID-X. Genetic parameters and population relationships were analysed.Results: Allele frequencies ranged from 0.001 to 0.5889. The combined power of discrimination (CPD) and the combined power of exclusion (CPE) of the 23 STR loci were 0.999999999999999999 and 0.999996765, respectively. No deviations from Hardy-Weinberg equilibrium and linkage disequilibrium were observed. Inter-population comparison based on Fst, PCA, genetic distance, phylogenetic trees, and MDS showed that Zhuang population clustered with the populations holding a close geographic distance with Zhuang (Guangdong Han and Hainan Li populations).Conclusions: Our study indicated that the 23 autosomal STR loci included in DNA TyperTM 25 Kit can be used as forensic tools for individual identification and parentage testing. Moreover, the result of our mass investigation will enrich the forensic database of Chinese populations and serve for further study of the origin of anthropology.
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Affiliation(s)
- Li Zhang
- Department of Forensic Medicine, Faculty of Basic Medical Sciences, Chongqing Medical University, Chongqing, China
| | - Shisheng Zhu
- Faculty of Medical Technology, Chongqing Medical and Pharmaceutical College, Chongqing, China
| | - Fan Yang
- Institute of Forensic Science, Ministry of Public Security of China, Beijing, China
| | - Xue Bai
- Institute of Forensic Science, Ministry of Public Security of China, Beijing, China
| | - Yiren Yao
- Institute of Forensic Science, Ministry of Public Security of China, Beijing, China
| | - Jianbo Li
- Department of Forensic Medicine, Faculty of Basic Medical Sciences, Chongqing Medical University, Chongqing, China
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3
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Zhang J, Bao Y, Tao R, Guo F, Sheng X, Bian Y, Liu X, Zhang S, Li C. Genetic polymorphisms of 21 STR loci of Golden eye™ DNA ID 22NC kit in five ethnic groups of China. Forensic Sci Res 2018; 4:348-350. [PMID: 32002494 PMCID: PMC6968254 DOI: 10.1080/20961790.2018.1479148] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Accepted: 05/17/2018] [Indexed: 02/03/2023] Open
Affiliation(s)
- Jiashuo Zhang
- Department of Forensic Science, Medical School of Soochow University, Suzhou, China.,Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
| | - Yun Bao
- Department of Forensic Medicine, Inner Mongolia Medical University, Hohhot, China
| | - Ruiyang Tao
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China.,Department of Forensic Genetics, West China School of Basic Science and Forensic Medicine, Sichuan University (West China University of Medical Sciences), Chengdu, China
| | - Fei Guo
- Department of Forensic Medicine, Criminal Investigation Police University of China, Huanggu District, Shenyang, China
| | - Xiang Sheng
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
| | - Yingnan Bian
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
| | - Xiling Liu
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
| | - Suhua Zhang
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
| | - Chengtao Li
- Department of Forensic Science, Medical School of Soochow University, Suzhou, China.,Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Shanghai, China
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4
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Guo Y, Chen C, Xie T, Cui W, Meng H, Jin X, Zhu B. Forensic efficiency estimate and phylogenetic analysis for Chinese Kyrgyz ethnic group revealed by a panel of 21 short tandem repeats. ROYAL SOCIETY OPEN SCIENCE 2018; 5:172089. [PMID: 30110484 PMCID: PMC6030347 DOI: 10.1098/rsos.172089] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 05/04/2018] [Indexed: 06/08/2023]
Abstract
Short tandem repeats (STRs) with a high level of polymorphisms and convenient detection method play an indispensable role in human population and forensic genetics. Recently, we detected the 21 autosomal non-combined DNA index system (non-CODIS) STR loci in a Kyrgyz ethnic group, calculated their forensic parameters and analysed its genetic relationships with reference populations from China. In total, 168 alleles were observed at 21 non-CODIS STRs with corresponding allelic frequencies from 0.0016 to 0.4788. No significant deviations at these STRs were observed from the Hardy-Weinberg equilibrium. The values of cumulative power of discrimination and probability of exclusion for all the 21 non-CODIS STRs were 0.99999999999999999998835 and 0.9999994002, respectively. Furthermore, the analyses of phylogenetic trees, genetic distances and interpopulation differentiations demonstrated that the Kyrgyz group had relatively close genetic relationships with the Uygur and Kazak groups. These 21 non-CODIS STRs were characterized by high genetic diversities in the Kyrgyz group and could be applied as a robust tool for individual identification and kinship testing in forensic sciences.
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Affiliation(s)
- Yuxin Guo
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- College of Medicine and Forensics, Xi'an Jiaotong University Health Science Center, Xi'an 710061, People's Republic of China
| | - Chong Chen
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- College of Medicine and Forensics, Xi'an Jiaotong University Health Science Center, Xi'an 710061, People's Republic of China
| | - Tong Xie
- Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
| | - Wei Cui
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- College of Medicine and Forensics, Xi'an Jiaotong University Health Science Center, Xi'an 710061, People's Republic of China
| | - Haotian Meng
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
| | - Xiaoye Jin
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- College of Medicine and Forensics, Xi'an Jiaotong University Health Science Center, Xi'an 710061, People's Republic of China
| | - Bofeng Zhu
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
- Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
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5
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He G, Wang Z, Zou X, Chen X, Liu J, Wang M, Hou Y. Genetic diversity and phylogenetic characteristics of Chinese Tibetan and Yi minority ethnic groups revealed by non-CODIS STR markers. Sci Rep 2018; 8:5895. [PMID: 29651125 PMCID: PMC5897523 DOI: 10.1038/s41598-018-24291-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Accepted: 03/13/2018] [Indexed: 12/16/2022] Open
Abstract
Non-CODIS STRs, with high polymorphism and allele frequency difference among ethnically and geographically different populations, play a crucial role in population genetics, molecular anthropology, and human forensics. In this work, 332 unrelated individuals from Sichuan Province (237 Tibetan individuals and 95 Yi individuals) are firstly genotyped with 21 non-CODIS autosomal STRs, and phylogenetic relationships with 26 previously investigated populations (9,444 individuals) are subsequently explored. In the Sichuan Tibetan and Yi, the combined power of discrimination (CPD) values are 0.9999999999999999999 and 0.9999999999999999993, and the combined power of exclusion (CPE) values are 0. 999997 and 0.999999, respectively. Analysis of molecular variance (AMOVA), principal component analysis (PCA), multidimensional scaling plots (MDS) and phylogenetic analysis demonstrated that Sichuan Tibetan has a close genetic relationship with Tibet Tibetan, and Sichuan Yi has a genetic affinity with Yunnan Bai group. Furthermore, significant genetic differences have widely existed between Chinese minorities (most prominently for Tibetan and Kazakh) and Han groups, but no population stratifications rather a homogenous group among Han populations distributed in Northern and Southern China are observed. Aforementioned results suggested that these 21 STRs are highly polymorphic and informative in the Sichuan Tibetan and Yi, which are suitable for population genetics and forensic applications.
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Affiliation(s)
- Guanglin He
- Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Zheng Wang
- Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Xing Zou
- Department of Forensic Medicine, College of Basic Medicine, Chongqing Medical University, Chongqing, China
| | - Xu Chen
- Department of Clinical Laboratory, the First People's Hospital of Liangshan Yi Autonomous Prefecture, Xichang, Sichuan, China
| | - Jing Liu
- Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Mengge Wang
- Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Yiping Hou
- Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China.
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6
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Genetic polymorphism of 21 non-CODIS STR loci in Chengdu Han population and its interpopulation analysis between 25 populations in China. Leg Med (Tokyo) 2017; 31:14-16. [PMID: 29245019 DOI: 10.1016/j.legalmed.2017.12.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2017] [Revised: 10/26/2017] [Accepted: 12/08/2017] [Indexed: 12/11/2022]
Abstract
AGCU 21+1 STR kit contains 21 non-combined DNA index system (non-CODIS) short tandem repeats (STR) loci and a sex-determining locus amelogenin. In this study, we evaluated the genetic diversity and forensically relevant population statistics of 21 non-CODIS loci in 210 Chinese Han individuals from Chengdu city, Sichuan province, Southwest China. No significant deviations from Hardy-Weinberg equilibrium were observed within the 21 non-CODIS STR loci. The combined power of discrimination (CPD) and combined power of exclusion (CPE) were 0.99999999999999999994278, 0.999999355 respectively. To reveal interpopulation differentiations of mainland population of China, a neighbor-joining (N-J) phylogenetic tree was constructed based on Nei's genetic distances among Chengdu Han and 25 published populations. The phylogenetic analyses indicated that Chengdu Han population keeps a close genetic relationship with other Han populations.
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7
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He G, Wang Z, Wang M, Hou Y. Genetic Diversity and Phylogenetic Differentiation of Southwestern Chinese Han: a comprehensive and comparative analysis on 21 non-CODIS STRs. Sci Rep 2017; 7:13730. [PMID: 29061987 PMCID: PMC5653741 DOI: 10.1038/s41598-017-13190-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 09/19/2017] [Indexed: 11/08/2022] Open
Abstract
Short tandem repeats (STRs), with high polymorphism and complex evolution information, play a significant role in genetic association studies like population genetics, molecular anthropology and human forensics. However, human genetic diversity has only been partially sampled and available for Southwest Chinese Han population, as well as the genetic architecture of this population remains uncharacterized. In this work, 368 unrelated Han individuals from Sichuan province were firstly genotyped with 21 non-CODIS autosomal STRs, and phylogenetic relationships along administrative (Han Chinese from different regions) and ethnic divisions (minority ethnic groups) were subsequently investigated. The CMP and CPE were 6.2796 × 10-20 and 0.9999999, respectively. Analysis of molecular variance (AMOVA), principal component analysis (PCA), multidimensional scaling plots (MDS) and phylogenetic analysis consistently demonstrated that the Southwest Han population had a close genetic relationship with the geographically close population (Hunan Han) and kept a distant genetic relationship with some ethnic groups, most prominently for Gansu Yugu and Fujian She. Furthermore, no significant genetic distinction between the Northern Han and Southern Han was observed. Aforementioned results suggested that these 21 STRs are highly polymorphic and informative, which are suitable for human identification and population genetics.
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Affiliation(s)
- Guanglin He
- Institute of Forensic Medicine, West China School of Basic Science and Forensic Medicine, Sichuan University, Chengdu, 610041, China
| | - Zheng Wang
- Institute of Forensic Medicine, West China School of Basic Science and Forensic Medicine, Sichuan University, Chengdu, 610041, China
| | - Mengge Wang
- Institute of Forensic Medicine, West China School of Basic Science and Forensic Medicine, Sichuan University, Chengdu, 610041, China
| | - Yiping Hou
- Institute of Forensic Medicine, West China School of Basic Science and Forensic Medicine, Sichuan University, Chengdu, 610041, China.
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8
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Guo YX, Chen JG, Wang Y, Yan JW, Chen J, Yao TH, Zhang LP, Yang G, Meng HT, Zhang YD, Mei T, Liu YS, Dong Q, Zhu BF. Genetic polymorphism analyses of a novel panel of 19 X-STR loci in the Chinese Uygur ethnic minority. J Zhejiang Univ Sci B 2017; 17:367-74. [PMID: 27143264 DOI: 10.1631/jzus.b1500228] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The population genetic data and forensic parameters of 19 X-chromosome short tandem repeat (X-STR) loci in Chinese Uygur ethnic minority are presented. These loci were detected in a sample of 233 (94 males and 139 females) unrelated healthy individuals. We observed 238 alleles at the 19 X-STR loci, with the corresponding gene frequencies spanning the range from 0.0021 to 0.5644. After Bonferroni correction (P>0.0026), there were no significant deviations from Hardy-Weinberg equilibrium. The cumulative power of discrimination in females and males, and the probability of exclusion of the 19 X-STR loci were 0.999 999 999 999 999 999 998 091, 0.999 999 999 999 966, and 0.999 999 986 35, respectively. The cumulative mean exclusion chance was 0.999 999 992 849 in deficiency cases, 0.999 999 999 999 628 in normal trios, and 0.999 999 998 722 in duo cases. The high value of the forensic parameters mentioned above revealed that the novel panel of 19 loci had important values for forensic applications in the Uygur group.
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Affiliation(s)
- Yu-Xin Guo
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
| | - Jian-Gang Chen
- Department of Biochemistry, Preclinical Medicine College, Xinjiang Medical University, Urumqi 830011, China
| | - Yan Wang
- Criminal Police Detachment of Yili Public Security Bureau, Yili 835000, China
| | - Jiang-Wei Yan
- Key Laboratory of Genome Sciences, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
| | - Jing Chen
- Key Laboratory of Genome Sciences, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
| | - Tian-Hua Yao
- Department of General Dentistry, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
| | - Li-Ping Zhang
- Department of Biochemistry, Preclinical Medicine College, Xinjiang Medical University, Urumqi 830011, China
| | - Guang Yang
- Department of Pathology and Laboratory Medicine, Loma Linda University Medical Center, California 92354, USA
| | - Hao-Tian Meng
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
| | - Yu-Dang Zhang
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
| | - Ting Mei
- Department of Biochemistry, Preclinical Medicine College, Xinjiang Medical University, Urumqi 830011, China
| | - Yao-Shun Liu
- Department of Biochemistry, Preclinical Medicine College, Xinjiang Medical University, Urumqi 830011, China
| | - Qian Dong
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
| | - Bo-Feng Zhu
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, China.,Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an 710004, China
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9
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Forensic effectiveness and population differentiations study of AGCU 21 + 1 fluorescence multiplex in Chinese Henan Han population. Forensic Sci Int Genet 2017; 28:e18-e21. [DOI: 10.1016/j.fsigen.2017.01.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Revised: 12/10/2016] [Accepted: 01/24/2017] [Indexed: 01/10/2023]
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10
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Genetic polymorphism of 21 non-CODIS STR loci for Guangdong (Southern China) Han population. Forensic Sci Int Genet 2017; 27:180-181. [DOI: 10.1016/j.fsigen.2016.11.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 10/10/2016] [Accepted: 11/21/2016] [Indexed: 10/20/2022]
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11
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Li J, Guo F, He W, Zhai D, Chen X, Ou J, Zeng F, Cheng B. Allele frequencies of 15 autosomal STR loci in the Yi ethnic minority from Yunnan Province in the far southwest of China. Forensic Sci Int Genet 2016; 26:e23-e24. [PMID: 28029587 DOI: 10.1016/j.fsigen.2016.10.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2016] [Revised: 10/03/2016] [Accepted: 10/23/2016] [Indexed: 10/20/2022]
Affiliation(s)
- Jun Li
- Department of Forensic Medicine, National Police University of China, No. 83, Tawan Street, Huanggu District, Shenyang, Liaoning 110854, China
| | - Fei Guo
- Department of Forensic Medicine, National Police University of China, No. 83, Tawan Street, Huanggu District, Shenyang, Liaoning 110854, China.
| | - Wei He
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
| | - Dian Zhai
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
| | - Xueyun Chen
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
| | - Junxing Ou
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
| | - Faming Zeng
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
| | - Baowen Cheng
- Criminal Investigation Department of Yunnan Province, No. 656, Guangfu Road, Xishan District, Kunming, Yunnan 650228, China
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12
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Zhang YD, Shen CM, Jin R, Li YN, Wang B, Ma LX, Meng HT, Yan JW, Dan Wang H, Yang ZL, Zhu BF. Forensic evaluation and population genetic study of 30 insertion/deletion polymorphisms in a Chinese Yi group. Electrophoresis 2015; 36:1196-201. [PMID: 25753218 DOI: 10.1002/elps.201500003] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2015] [Revised: 02/09/2015] [Accepted: 02/14/2015] [Indexed: 01/21/2023]
Affiliation(s)
- Yu-Dang Zhang
- Research Center of Stomatology, Stomatological Hospital; Xi'an Jiaotong University; Xi'an P. R. China
- Key Laboratory of Evidence Science (China University of Political Science and Law); Ministry of Education; Beijing P. R. China
| | - Chun-Mei Shen
- Blood Center of Shaanxi Province; Xi'an P. R. China
- College of Life Sciences; Shaanxi Normal University; Xi'an P. R. China
| | - Rui Jin
- Department of Radiology; The Second Affiliated Hospital of Xi'an Jiaotong University; Xi'an P. R. China
| | - Ya-Ni Li
- College of Energy and Environmental Engineering; Yan'an University; Yan'an P. R. China
| | - Bo Wang
- College of Biological Technology; Xi'an University; Xi'an P. R. China
| | - Li-Xia Ma
- Xi'an Jiaotong University Health Science Center; Xi'an P. R. China
| | - Hao-Tian Meng
- Research Center of Stomatology, Stomatological Hospital; Xi'an Jiaotong University; Xi'an P. R. China
- Key Laboratory of Evidence Science (China University of Political Science and Law); Ministry of Education; Beijing P. R. China
| | - Jiang-Wei Yan
- Key Laboratory of Genome Sciences, Beijing Institute of Genomics; Chinese Academy of Sciences; Beijing P. R. China
| | - Hong- Dan Wang
- Medical Genetic Institute of Henan Province, Henan Provincial People's Hospital; People's Hospital of Zhengzhou University; Zhengzhou P. R. China
| | - Ze-Long Yang
- Xi'an Jiaotong University Health Science Center; Xi'an P. R. China
| | - Bo-Feng Zhu
- Research Center of Stomatology, Stomatological Hospital; Xi'an Jiaotong University; Xi'an P. R. China
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13
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Genetic variability and phylogenetic analysis of Han population from Guanzhong region of China based on 21 non-CODIS STR loci. Sci Rep 2015; 5:8872. [PMID: 25747708 PMCID: PMC4352849 DOI: 10.1038/srep08872] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Accepted: 02/06/2015] [Indexed: 11/19/2022] Open
Abstract
In the present study, we presented the population genetic data and their forensic parameters of 21 non-CODIS autosomal STR loci in Chinese Guanzhong Han population. A total of 166 alleles were observed with corresponding allelic frequencies ranging from 0.0018 to 0.5564. No STR locus was observed to deviate from the Hardy-Weinberg equilibrium and linkage disequilibriums after applying Bonferroni correction. The cumulative power of discrimination and probability of exclusion of all the 21 STR loci were 0.99999999999999999993814 and 0.999998184, respectively. The results of genetic distances, phylogenetic trees and principal component analysis revealed that the Guanzhong Han population had a closer relationship with Ningxia Han, Tujia and Bai groups than other populations tested. In summary, these 21 STR loci showed a high level of genetic polymorphisms for the Guanzhong Han population and could be used for forensic applications and the studies of population genetics.
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Meng HT, Zhang YD, Shen CM, Yuan GL, Yang CH, Jin R, Yan JW, Wang HD, Liu WJ, Jing H, Zhu BF. Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups. Sci Rep 2015; 5:8260. [PMID: 25651970 PMCID: PMC4317707 DOI: 10.1038/srep08260] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Accepted: 01/13/2015] [Indexed: 01/18/2023] Open
Abstract
In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at HLD118 locus to 0.5247 at HLD92 locus while the expected heterozygosities ranged from 0.1559 at HLD118 locus to 0.4997 at HLD101 locus. The cumulative power of exclusion and total probability of discrimination power in the studied group were 0.9867 and 0.9999999999902 for the 30 loci, respectively. Analyses of structure, PCA, interpopulation differentiations and phylogenetic tree revealed that the Xibe group had close genetic relationships with South Korean, Beijing Han and Guangdong Han groups. The results indicated that these 30 loci should only be used as a complement for autosomal STRs in paternity cases but could provide an acceptable level of discrimination in forensic identification cases in the studied Xibe group. Further studies should be conducted for better understanding of the Xibe genetic background.
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Affiliation(s)
- Hao-Tian Meng
- 1] Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an. 710004, P. R. China [2] Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China
| | - Yu-Dang Zhang
- 1] Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an. 710004, P. R. China [2] Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China
| | - Chun-Mei Shen
- 1] Blood Center of Shaanxi Province, Xi'an 710061, P. R. China [2] College of Life Sciences, Shaanxi Normal University, Xi'an 710062, China
| | - Guo-Lian Yuan
- Scientific Research and Experiment Center, The Second Affiliated Hospital, School of Medicine, Xi'an Jiaotong University, Xi'an 710004, P. R. China
| | - Chun-Hua Yang
- 1] Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China [2] People's hospital of Arong Banner, Hulun Buir City, 162750. P. R. China
| | - Rui Jin
- 1] Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China [2] The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an. 710004, P. R. China
| | - Jiang-Wei Yan
- Key Laboratory of Genome Sciences, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, P. R. China
| | - Hong-Dan Wang
- Medical Genetic Institute of Henan Province, People's Hospital of Henan Province, Zhengzhou 450003, P. R. China
| | - Wen-Juan Liu
- Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China
| | - Hang Jing
- Xi'an Jiaotong University Health Science Center, Xi'an 710061, P. R. China
| | - Bo-Feng Zhu
- Research Center of Stomatology, Stomatological Hospital, Xi'an Jiaotong University, Xi'an. 710004, P. R. China
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Meng HT, Zhang LP, Wu H, Yang CH, Chen JG, Wang Y, Yan JW, Wang HD, Zhang YD, Liu WJ, Zhu BF. Genetic diversities of 20 novel autosomal STRs in Chinese Xibe ethnic group and its genetic relationships with neighboring populations. Gene 2015; 557:222-8. [DOI: 10.1016/j.gene.2014.12.037] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Revised: 12/15/2014] [Accepted: 12/16/2014] [Indexed: 11/17/2022]
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16
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Zhu BF, Zhang YD, Shen CM, Du WA, Liu WJ, Meng HT, Wang HD, Yang G, Jin R, Yang CH, Yan JW, Bie XH. Developmental validation of the AGCU 21+1 STR kit: a novel multiplex assay for forensic application. Electrophoresis 2014; 36:271-6. [PMID: 25363755 DOI: 10.1002/elps.201400333] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2014] [Revised: 09/21/2014] [Accepted: 10/15/2014] [Indexed: 11/12/2022]
Abstract
In this study, we describe the developmental validation assay performed on a novel designed STR multiplex system, AGCU 21+1 STR kit. This kit contains a sex-determining locus amelogenin and 21 noncombined DNA index system STR loci, that are, D6S474, D12ATA63, D22S1045, D10S1248, D1S1677, D11S4463, D1S1627, D3S4529, D2S441, D6S1017, D4S2408, D19S433, D17S1301, D1GATA113, D18S853, D20S482, D14S1434, D9S1122, D2S1776, D10S1435, and D5S2500. The 21+1 kit was validated by a series of tests including optimized PCR conditions, sensitivity, precision and accuracy, stutter ratio, DNA mixture, inhibitors, and species specificity according to the revised validation guidelines issued by the Scientific Working Group on DNA Analysis Methods (SWGDAM). Our results in this study show that the kit is a useful tool for forensic application.
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Affiliation(s)
- Bo-Feng Zhu
- Research Center of Stomatology, Stomatology Hospital, Xi'an Jiaotong University, Xi'an, China
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Meng HT, Han JT, Zhang YD, Liu WJ, Wang TJ, Yan JW, Huang JF, Du WA, Guo JX, Wang HD, Zhang YH, Zhou RH, Zhu BF, Wei X. Diversity study of 12 X-chromosomal STR loci in Hui ethnic from China. Electrophoresis 2014; 35:2001-7. [PMID: 24723364 DOI: 10.1002/elps.201400045] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Revised: 02/27/2014] [Accepted: 04/01/2014] [Indexed: 11/05/2022]
Affiliation(s)
- Hao-Tian Meng
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Jun-Tao Han
- Department of Burns and Cutaneous Surgery; Xijing Hospital, Fourth Military Medical University; Xi'an P. R. China
| | - Yu-Dang Zhang
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Wen-Juan Liu
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Tian-Ju Wang
- Blood Center of Shaanxi Province; Xi'an P. R. China
| | - Jiang-Wei Yan
- Beijing Institute of Genomics; Chinese Academy of Science; Beijing P. R. China
| | - Jing-Feng Huang
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Wei-An Du
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Jian-Xin Guo
- First Affiliated Hospital, School of Medicine; Xi'an Jiaotong University; Xi'an P. R. China
| | - Hong-Dan Wang
- Medical Genetic Institute of Henan Province; Henan Provincial People's Hospital, People's Hospital of Zhengzhou University; Zhengzhou P. R. China
| | - Yu-Hong Zhang
- Criminal Police Detachment of Nantong City Public Security Bureau; Nantong P. R. China
| | - Ru-Hua Zhou
- Criminal Police Detachment of Suzhou City Public Security Bureau; Suzhou P. R. China
| | - Bo-Feng Zhu
- Xi'an Jiaotong University; Health Science Center; Xi'an P. R. China***
| | - Xing Wei
- Department of Trauma Orthopedics; Xi'an Hong-hui Hospital; Xi'an P. R. China
- Department of Trauma Orthopedics; Hong-hui Hospital; Xi'an Jiaotong University College of Medicine; Xi'an P. R. China
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18
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Gao Y, Han JT, Shen CM, Wu H, Yuan GL, Zhao LJ, Yan JW, Meng HT, Zhang YD, Liu WJ, Wang HD, White RE, Wei X. Structural polymorphism analysis of Chinese Mongolian ethnic group revealed by a new STR panel: genetic relationship to other groups. Electrophoresis 2014; 35:2008-13. [PMID: 24668876 DOI: 10.1002/elps.201300655] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Revised: 03/18/2014] [Accepted: 03/18/2014] [Indexed: 11/06/2022]
Abstract
Mongolian is the eighth largest ethnic minority on Chinese population data according to the 2010 census. In the present study, we presented the first report about the allelic frequencies and forensic statistical parameters at the 21 new STRs and analyzed linkage disequilibrium of pairwise loci in the Mongolian ethnic minority, China. Hardy-Weinberg equilibrium tests demonstrated no significant deviations except for the D1S1627 locus. The cumulative power of discrimination and power of exclusion of all the loci are 0.9999999999999999992576 and 0.9999997528, respectively. The results of analysis of molecular variance showed that significant differences between the Mongolian and the other eight populations were found at 1-9 STR loci. In population genetics, the results of principal component analysis, structure analysis, and phylogenetic reconstruction analysis indicated shorter genetic distance between the Mongolian group and the Ningxia Han. All the results suggest that the 21 new STR loci will contribute to Chinese population genetics and forensic caseworks in the Mongolian group.
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Affiliation(s)
- Ying Gao
- Department of Pediatrics, Shaanxi Provincial People's Hospital, Xi'an, P. R. China
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