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Cheng J, Zhang C, Zhang K, Li J, Hou Y, Xin J, Sun Y, Xu C, Xu W. Cyanobacteria-Mediated Light-Driven Biotransformation: The Current Status and Perspectives. ACS OMEGA 2023; 8:42062-42071. [PMID: 38024730 PMCID: PMC10653055 DOI: 10.1021/acsomega.3c05407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/29/2023] [Accepted: 10/11/2023] [Indexed: 12/01/2023]
Abstract
Most chemicals are manufactured by traditional chemical processes but at the expense of toxic catalyst use, high energy consumption, and waste generation. Biotransformation is a green, sustainable, and cost-effective process. As cyanobacteria can use light as the energy source to power the synthesis of NADPH and ATP, using cyanobacteria as the chassis organisms to design and develop light-driven biotransformation platforms for chemical synthesis has been gaining attention, since it can provide a theoretical and practical basis for the sustainable and green production of chemicals. Meanwhile, metabolic engineering and genome editing techniques have tremendous prospects for further engineering and optimizing chassis cells to achieve efficient light-driven systems for synthesizing various chemicals. Here, we display the potential of cyanobacteria as a promising light-driven biotransformation platform for the efficient synthesis of green chemicals and current achievements of light-driven biotransformation processes in wild-type or genetically modified cyanobacteria. Meanwhile, future perspectives of one-pot enzymatic cascade biotransformation from biobased materials in cyanobacteria have been proposed, which could provide additional research insights for green biotransformation and accelerate the advancement of biomanufacturing industries.
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Affiliation(s)
- Jie Cheng
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
| | - Chaobo Zhang
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
| | - Kaidian Zhang
- State
Key Laboratory of Marine Resource Utilization in the South China Sea,
School of Marine Biology and Aquaculture, Hainan University, Haikou, Hainan 570100, China
- Xiamen
Key Laboratory of Urban Sea Ecological Conservation and Restoration,
State Key Laboratory of Marine Environmental Science, College of Ocean
and Earth Sciences, Xiamen University, Xiamen, Fujian 361005, China
| | - Jiashun Li
- Xiamen
Key Laboratory of Urban Sea Ecological Conservation and Restoration,
State Key Laboratory of Marine Environmental Science, College of Ocean
and Earth Sciences, Xiamen University, Xiamen, Fujian 361005, China
| | - Yuyong Hou
- Key
Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotech-nology, Chinese
Academy of Sciences, Tianjin 300308, China
| | - Jiachao Xin
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
| | - Yang Sun
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
| | - Chengshuai Xu
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
| | - Wei Xu
- School
of Life Sciences, Liaocheng University, Liaocheng, Shandong 252000, China
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2
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Fuchs CS, Farnberger JE, Steinkellner G, Sattler JH, Pickl M, Simon RC, Zepeck F, Gruber K, Kroutil W. Asymmetric Amination of α-Chiral Aliphatic Aldehydes via
Dynamic Kinetic Resolution to Access Stereocomplementary Brivaracetam and Pregabalin Precursors. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201701449] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Christine S. Fuchs
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o; University of Graz; Harrachgasse 21 8010 Graz Austria
| | - Judith E. Farnberger
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o; University of Graz; Harrachgasse 21 8010 Graz Austria
| | - Georg Steinkellner
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o; University of Graz; Harrachgasse 21 8010 Graz Austria
- Institute of Molecular Biosciences; University of Graz; Humboldtstrasse 50/3 8010 Graz Austria
| | - Johann H. Sattler
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz; Harrachgasse 21 8010 Graz Austria
| | - Mathias Pickl
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz; Harrachgasse 21 8010 Graz Austria
| | - Robert C. Simon
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz; Harrachgasse 21 8010 Graz Austria
| | - Ferdinand Zepeck
- Sandoz GmbH; Biocatalysis Lab; Biochemiestrasse 10 6250 Kundl Austria
| | - Karl Gruber
- Institute of Molecular Biosciences; University of Graz; Humboldtstrasse 50/3 8010 Graz Austria
| | - Wolfgang Kroutil
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz; Harrachgasse 21 8010 Graz Austria
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3
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Pickl M, Jost E, Glueck SM, Faber K. Improved biooxidation of Benzyl alcohols catalyzed by the flavoprotein (5-Hydroxymethyl)furfural oxidase in organic solvents. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.07.038] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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4
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Diederichs S, Korona A, Staaden A, Kroutil W, Honda K, Ohtake H, Büchs J. Phenotyping the quality of complex medium components by simple online-monitored shake flask experiments. Microb Cell Fact 2014; 13:149. [PMID: 25376163 PMCID: PMC4230760 DOI: 10.1186/s12934-014-0149-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Accepted: 10/15/2014] [Indexed: 11/10/2022] Open
Abstract
Background Media containing yeast extracts and other complex raw materials are widely used for the cultivation of microorganisms. However, variations in the specific nutrient composition can occur, due to differences in the complex raw material ingredients and in the production of these components. These lot-to-lot variations can affect growth rate, product yield and product quality in laboratory investigations and biopharmaceutical production processes. In the FDA’s Process Analytical Technology (PAT) initiative, the control and assessment of the quality of critical raw materials is one key aspect to maintain product quality and consistency. In this study, the Respiration Activity Monitoring System (RAMOS) was used to evaluate the impact of different yeast extracts and commercial complex auto-induction medium lots on metabolic activity and product yield of four recombinant Escherichia coli variants encoding different enzymes. Results Under non-induced conditions, the oxygen transfer rate (OTR) of E. coli was not affected by a variation of the supplemented yeast extract lot. The comparison of E. coli cultivations under induced conditions exhibited tremendous differences in OTR profiles and volumetric activity for all investigated yeast extract lots of different suppliers as well as lots of the same supplier independent of the E. coli variant. Cultivation in the commercial auto-induction medium lots revealed the same reproducible variations. In cultivations with parallel offline analysis, the highest volumetric activity was found at different cultivation times. Only by online monitoring of the cultures, a distinct cultivation phase (e.g. glycerol depletion) could be detected and chosen for comparable and reproducible offline analysis of the yield of functional product. Conclusions This work proves that cultivations conducted in complex media may be prone to significant variation in final product quality and quantity if the quality of the raw material for medium preparation is not thoroughly checked. In this study, the RAMOS technique enabled a reliable and reproducible screening and phenotyping of complex raw material lots by online measurement of the respiration activity. Consequently, complex raw material lots can efficiently be assessed if the distinct effects on culture behavior and final product quality and quantity are visualized. Electronic supplementary material The online version of this article (doi:10.1186/s12934-014-0149-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Sylvia Diederichs
- AVT - Biochemical Engineering, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany.
| | - Anna Korona
- AVT - Biochemical Engineering, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany.
| | - Antje Staaden
- AVT - Biochemical Engineering, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany.
| | - Wolfgang Kroutil
- Department of Chemistry, Organic and Bioorganic Chemistry, NAWI Graz, University of Graz, Heinrichstrasse 28, A-8010, Graz, Austria.
| | - Kohsuke Honda
- Department of Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
| | - Hisao Ohtake
- Department of Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
| | - Jochen Büchs
- AVT - Biochemical Engineering, RWTH Aachen University, Worringerweg 1, D-52074, Aachen, Germany.
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5
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Simon RC, Richter N, Busto E, Kroutil W. Recent Developments of Cascade Reactions Involving ω-Transaminases. ACS Catal 2013. [DOI: 10.1021/cs400930v] [Citation(s) in RCA: 219] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Robert C. Simon
- Department
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Nina Richter
- ACIB GmbH, c/o Heinrichstraße
28, 8010 Graz, Austria
| | - Eduardo Busto
- Department
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Wolfgang Kroutil
- Department
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
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Zilbeyaz K, Taskin M, Kurbanoglu EB, Kurbanoglu NI, Kilic H. Production of (R)-1-phenylethanols through bioreduction of acetophenones by a new fungus isolate Trichothecium roseum. Chirality 2010; 22:543-7. [PMID: 19743484 DOI: 10.1002/chir.20775] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A total of 120 fungal strains were isolated from soil samples and evaluated in the bioreduction of substituted acetophenones to the corresponding (R)-alcohols. Among these strains, isolate Trichothecium roseum EBK-18 was highly effective in the production of (R)-alcohols with excellent enantioselectivity (ee > 99%). Gram scale preparation of (R)-1-phenylethanol is reported.
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Affiliation(s)
- Kani Zilbeyaz
- Faculty of Sciences, Department of Chemistry, Ataturk University, Erzurum 25240, Turkey
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7
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Karabec M, Łyskowski A, Tauber KC, Steinkellner G, Kroutil W, Grogan G, Gruber K. Structural insights into substrate specificity and solvent tolerance in alcohol dehydrogenase ADH-‘A’ from Rhodococcus ruber DSM 44541. Chem Commun (Camb) 2010; 46:6314-6. [DOI: 10.1039/c0cc00929f] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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8
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Schroer K, Mackfeld U, Tan IAW, Wandrey C, Heuser F, Bringer-Meyer S, Weckbecker A, Hummel W, Daussmann T, Pfaller R, Liese A, Lütz S. Continuous asymmetric ketone reduction processes with recombinant Escherichia coli. J Biotechnol 2007; 132:438-44. [PMID: 17826859 DOI: 10.1016/j.jbiotec.2007.08.003] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2007] [Revised: 07/04/2007] [Accepted: 08/01/2007] [Indexed: 11/21/2022]
Abstract
The reduction of methyl acetoacetate was carried out in continuously operated biotransformation processes catalyzed by recombinant Escherichia coli cells expressing an alcohol dehydrogenase from Lactobacillus brevis. Three different cell types were applied as biocatalysts in three different cofactor regeneration approaches. Both processes with enzyme-coupled cofactor regeneration catalyzed by formate dehydrogenase or glucose dehydrogenase are characterized by a rapid deactivation of the biocatalyst. By contrast the processes with substrate-coupled cofactor regeneration by alcohol dehydrogenase catalyzed oxidation of 2-propanol could be run over a period of 7 weeks with exceedingly high substrate and cosubstrate concentrations of up to 2.5 and 2.8 mol L(-1), respectively. Even under these extreme conditions, the applied biocatalyst showed a good stability with only marginal leakage of intracellular cofactors.
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Affiliation(s)
- Kirsten Schroer
- Institut für Biotechnologie 2, Forschungszentrum Jülich, 52425 Jülich, Germany
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9
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de Gonzalo G, Lavandera I, Durchschein K, Wurm D, Faber K, Kroutil W. Asymmetric biocatalytic reduction of ketones using hydroxy-functionalised water-miscible ionic liquids as solvents. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.10.010] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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10
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Goldberg K, Schroer K, Lütz S, Liese A. Biocatalytic ketone reduction—a powerful tool for the production of chiral alcohols—part II: whole-cell reductions. Appl Microbiol Biotechnol 2007; 76:249-55. [PMID: 17486338 DOI: 10.1007/s00253-007-1005-x] [Citation(s) in RCA: 188] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2007] [Revised: 04/13/2007] [Accepted: 04/15/2007] [Indexed: 11/27/2022]
Abstract
Enzymes are able to perform reactions under mild conditions, e.g., pH and temperature, with remarkable chemo-, regio-, and stereoselectivity. Due to this feature the number of biocatalysts used in organic synthesis has rapidly increased during the last decades, especially for the production of chiral compounds. The present review highlights biotechnological processes for the production of chiral alcohols by reducing prochiral ketones with whole cells. Microbial transformations feature different characteristics in comparison to isolated enzymes. Enzymes that are used in whole-cell biotransformations are often more stable due to the presence of their natural environment inside the cell. Because reductase-catalyzed reactions are dependent on cofactors, one major task in process development is to provide an effective method for regeneration of the consumed cofactors. Many whole-cell biocatalysts offer their internal cofactor regeneration that can be used by adding cosubstrates, glucose or, in the case of cyanobacteria, simply light. In this paper, various processes carried out on laboratory and industrial scales are presented. Thereby, attention is turned to process parameters, e.g., conversion, yield, enantiomeric excess, and process strategies, e.g., the application of biphasic systems. The biocatalytic production of chiral alcohols utilizing isolated enzymes is presented in part I of this review.
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Affiliation(s)
- Katja Goldberg
- Institute of Technical Biocatalysis, Hamburg University of Technology, 21073 Hamburg, Germany
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11
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Ziegelmann-Fjeld KI, Musa MM, Phillips RS, Zeikus JG, Vieille C. A
Thermoanaerobacter ethanolicus
secondary alcohol dehydrogenase mutant derivative highly active and stereoselective on phenylacetone and benzylacetone. Protein Eng Des Sel 2007; 20:47-55. [PMID: 17283007 DOI: 10.1093/protein/gzl052] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The secondary alcohol dehydrogenase from Thermoanaerobacter ethanolicus 39E (TeSADH) is highly thermostable and solvent-stable, and it is active on a broad range of substrates. These properties make TeSADH an excellent template to engineer an industrial catalyst for chiral chemical synthesis. (S)-1-Phenyl-2-propanol was our target product because it is a precursor to major pharmaceuticals containing secondary alcohol groups. TeSADH has no detectable activity on this alcohol, but it is highly active on 2-butanol. The structural model we used to plan our mutagenesis strategy was based on the substrate's orientation in a horse liver alcohol dehydrogenase*p-bromobenzyl alcohol*NAD(+) ternary complex (PDB entry 1HLD). The W110A TeSADH mutant now uses (S)-1-phenyl-2-propanol, (S)-4-phenyl-2-butanol and the corresponding ketones as substrates. W110A TeSADH's kinetic parameters on these substrates are in the same range as those of TeSADH on 2-butanol, making W110A TeSADH an excellent catalyst. In particular, W110A TeSADH is twice as efficient on benzylacetone as TeSADH is on 2-butanol, and it produces (S)-4-phenyl-2-butanol from benzylacetone with an enantiomeric excess above 99%. W110A TeSADH is optimally active at 87.5 degrees C and remains highly thermostable. W110A TeSADH is active on aryl derivatives of phenylacetone and benzylacetone, making this enzyme a potentially useful catalyst for the chiral synthesis of aryl derivatives of alcohols. As a control in our engineering approach, we used the TbSADH*(S)-2-butanol binary complex (PDB entry 1BXZ) as the template to model a mutation that would make TeSADH active on (S)-1-phenyl-2-propanol. Mutant Y267G TeSADH did not have the substrate specificity predicted in this modeling study. Our results suggest that (S)-2-butanol's orientation in the TbSADH*(S)-2-butanol binary complex does not reflect its orientation in the ternary enzyme-substrate-cofactor complex.
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Affiliation(s)
- Karla I Ziegelmann-Fjeld
- Department of Biochemistry and Molecular Biology, Michigan State University, 410 Biochemistry Building, East Lansing, MI 48824-1319, USA
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