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Jeilani YA, Van Duong L, Al Qahtani OMS, Nguyen MT. A reinvestigation of the boron cluster B 15+/0/-: a benchmark of density functionals and consideration of aromaticity models. Phys Chem Chem Phys 2024; 26:11347-11359. [PMID: 38566485 DOI: 10.1039/d4cp00077c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
This study presents a thorough reinvestigation of the B15+/0/- isomers, first employing coupled-cluster theory CCSD(T) calculations to validate the performance of different DFT functionals. The B15+ cation has two planar lowest-lying isomers, while the first 3D isomer is less stable than the global minimum by ∼10 kcal mol-1. The PBE functional, within this benchmark survey, has proved to be reliable in predicting relative energies for boron isomers. Other functionals such as the TPSSh, PBE0 and HSE06 result in good energy ordering of isomers but warrant reconsideration when distinguishing between 2D and 3D forms. Caution is needed for structures having high spin contamination, as it may lead to significant errors. The anomalously lower stability of the B15- anion with respect to its neighbours, in terms of electron detachment energy, was explained through a competition between both rectangle and disk models for its geometry. This elucidates its stability with 12 electrons in rectangle model and instability with 10 electrons in disk-shaped structure, emphasizing the value of employing such geometric models. The proximity of the σ* LUMO to the π HOMO also contributes to the weakening of the B15- stability.
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Affiliation(s)
| | - Long Van Duong
- Atomic Molecular and Optical Physics Research Group, Science and Technology Advanced Institute, Van Lang University, Ho Chi Minh City, Vietnam.
- Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City, Vietnam
| | | | - Minh Tho Nguyen
- Laboratory of Chemical Computation and Modeling, Institute for Computational Science and Artificial Intelligence, Van Lang University, Ho Chi Minh City, Vietnam
- Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City, Vietnam
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Loukhovitski BI, Pelevkin AV, Sharipov AS. Toward size-dependent thermodynamics of nanoparticles from quantum chemical calculations of small atomic clusters: a case study of (B 2O 3) n. Phys Chem Chem Phys 2022; 24:13130-13148. [PMID: 35587125 DOI: 10.1039/d2cp01672a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a method for obtaining canonical partition functions and, accordingly, temperature-dependent thermodynamics of arbitrary-sized (nano) particles from electronic structure calculations of the corresponding small size atomic clusters. The guiding idea here is to extrapolate the basic properties underlying the thermochemistry of clusters (electronic energies, rotational constants, and vibrational frequencies) rather than the thermodynamic functions themselves. The thus obtained scaling dependences for these basic properties expressed in a simple analytical form provide an efficient tool for fast evaluation of the size-selected thermochemical data for particles of any nuclearity. To exemplify the performance of the methodology, neutral stoichiometric boron oxide clusters are considered. To this end, the geometry and various physical properties of the energetically lowest-lying (B2O3)n (n = 1,…,8) structures are found using density functional theory and the authors' multistage hierarchical procedure customized for global optimization of quite large cluster structures. With these data and based on the physically consistent scaling regularities for the principal cluster properties, the size-selected thermodynamic functions of boron oxide particles in the gas phase, such as enthalpy, entropy, and specific heat capacity, are derived. The variation of these characteristics with increasing cluster size is discussed in detail as well. To facilitate handling of the temperature and size dependences we have found here in further chemical kinetic and equilibrium modeling, the tabulated thermodynamic functions of interest are fitted for n = 1,…,1000 to the standard seven-parameter Chemkin polynomials.
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Affiliation(s)
- Boris I Loukhovitski
- Central Institute of Aviation Motors, Aviamotornaya 2, Moscow 111116, Russia. .,Joint Institute for High Temperatures of the Russian Academy of Sciences, Izhorskaya 13 Bldg. 2, Moscow 125412, Russia
| | - Alexey V Pelevkin
- Central Institute of Aviation Motors, Aviamotornaya 2, Moscow 111116, Russia. .,Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilova 38, Moscow 119991, Russia
| | - Alexander S Sharipov
- Central Institute of Aviation Motors, Aviamotornaya 2, Moscow 111116, Russia. .,Joint Institute for High Temperatures of the Russian Academy of Sciences, Izhorskaya 13 Bldg. 2, Moscow 125412, Russia
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Yañez O, Inostroza D, Usuga-Acevedo B, Vásquez-Espinal A, Pino-Rios R, Tabilo-Sepulveda M, Garza J, Barroso J, Merino G, Tiznado W. Evaluation of restricted probabilistic cellular automata on the exploration of the potential energy surface of Be6B11−. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2548-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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4
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Sharipov AS, Loukhovitski BI. Small atomic clusters: quantum chemical research of isomeric composition and physical properties. Struct Chem 2019. [DOI: 10.1007/s11224-019-01417-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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5
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Efficiency enhancements of a restricted stochastic search algorithm for locating local and global minima. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.03.059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Yañez O, Báez-Grez R, Inostroza D, Rabanal-León WA, Pino-Rios R, Garza J, Tiznado W. AUTOMATON: A Program That Combines a Probabilistic Cellular Automata and a Genetic Algorithm for Global Minimum Search of Clusters and Molecules. J Chem Theory Comput 2018; 15:1463-1475. [DOI: 10.1021/acs.jctc.8b00772] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Osvaldo Yañez
- Doctorado en Fisicoquı́mica Molecular, Facultad de Ciencias Exactas, Universidad Andres Bello, República 275 (2do piso), Santiago, 8370146, Chile
- Departamento de Ciencias Quı́micas, Facultad de Ciencias Exactas, Computacional and Theoretical Chemistry Group, Universidad Andres Bello, República 275 (3er piso), Santiago, 8370146, Chile
| | - Rodrigo Báez-Grez
- Doctorado en Fisicoquı́mica Molecular, Facultad de Ciencias Exactas, Universidad Andres Bello, República 275 (2do piso), Santiago, 8370146, Chile
- Departamento de Ciencias Quı́micas, Facultad de Ciencias Exactas, Computacional and Theoretical Chemistry Group, Universidad Andres Bello, República 275 (3er piso), Santiago, 8370146, Chile
| | - Diego Inostroza
- Departamento de Ciencias Quı́micas, Facultad de Ciencias Exactas, Computacional and Theoretical Chemistry Group, Universidad Andres Bello, República 275 (3er piso), Santiago, 8370146, Chile
| | - Walter A. Rabanal-León
- Departamento de Ciencias Quı́micas, Facultad de Ciencias Exactas, Computacional and Theoretical Chemistry Group, Universidad Andres Bello, República 275 (3er piso), Santiago, 8370146, Chile
| | - Ricardo Pino-Rios
- Laboratorio de Química Teórica, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Avenida Bernardo O’Higgins 3363, Santiago, 9170022, Chile
| | - Jorge Garza
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C.P. 09340 Mexico City, Mexico
| | - W. Tiznado
- Departamento de Ciencias Quı́micas, Facultad de Ciencias Exactas, Computacional and Theoretical Chemistry Group, Universidad Andres Bello, República 275 (3er piso), Santiago, 8370146, Chile
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Yañez O, Vásquez-Espinal A, Inostroza D, Ruiz L, Pino-Rios R, Tiznado W. A Fukui function-guided genetic algorithm. Assessment on structural prediction of Sin(n = 12-20) clusters. J Comput Chem 2017; 38:1668-1677. [DOI: 10.1002/jcc.24810] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 03/29/2017] [Accepted: 03/30/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Osvaldo Yañez
- Doctorado en Fisicoquímica Molecular; Facultad de Ciencias Exactas, Universidad Andres Bello; República 275 Santiago Chile
- Departamento de Ciencias Químicas; Facultad de Ciencias Exactas Universidad Andres Bello; República 275 Santiago Chile
| | - Alejandro Vásquez-Espinal
- Doctorado en Fisicoquímica Molecular; Facultad de Ciencias Exactas, Universidad Andres Bello; República 275 Santiago Chile
- Departamento de Ciencias Químicas; Facultad de Ciencias Exactas Universidad Andres Bello; República 275 Santiago Chile
| | - Diego Inostroza
- Centro de Bioinformatica y Simulación Molecular; Facultad de Ingeniería, Universidad de Talca; 2 Norte 685, Casilla 721 Talca Chile
| | - Lina Ruiz
- Centro de Investigación Biomédica, Universidad Autónoma de Chile; Santiago Chile
| | - Ricardo Pino-Rios
- Doctorado en Fisicoquímica Molecular; Facultad de Ciencias Exactas, Universidad Andres Bello; República 275 Santiago Chile
- Departamento de Ciencias Químicas; Facultad de Ciencias Exactas Universidad Andres Bello; República 275 Santiago Chile
| | - William Tiznado
- Doctorado en Fisicoquímica Molecular; Facultad de Ciencias Exactas, Universidad Andres Bello; República 275 Santiago Chile
- Departamento de Ciencias Químicas; Facultad de Ciencias Exactas Universidad Andres Bello; República 275 Santiago Chile
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Popov IA, Popov VF, Bozhenko KV, Černušák I, Boldyrev AI. Structural changes in the series of boron-carbon mixed clusters CxB10-x− (x = 3-10) upon substitution of boron by carbon. J Chem Phys 2013; 139:114307. [DOI: 10.1063/1.4820878] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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Addicoat MA, Fukuoka S, Page AJ, Irle S. Stochastic structure determination for conformationally flexible heterogenous molecular clusters: application to ionic liquids. J Comput Chem 2013; 34:2591-600. [PMID: 24022891 DOI: 10.1002/jcc.23420] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Revised: 08/02/2013] [Accepted: 08/05/2013] [Indexed: 12/26/2022]
Abstract
We present a novel method that enables accurate and efficient computational determination of conformationally flexible clusters, "Kick(3)" This method uses stochastically generated structures in combination with fast quantum mechanical methods. We demonstrate the power of this method by elucidating the structure of ionic liquid (IL) ([xMIM(+)][NO3(-)])n clusters (x = E, B, D, n = 1-10,15). Dispersion-corrected, third-order self-consistent-charge density-functional tight-binding (DFTB3) is shown to be a computationally efficient, yet reliable approximation to density functional theory for predicting and understanding IL structure and stability. The presented approach, therefore, enables the accurate and efficient screening of ILs with high potential toward practical applications, without recourse to more expensive quantum chemical methods.
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Affiliation(s)
- Matthew A Addicoat
- Department of Chemistry, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-4602, Japan
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Electronic structure and stabilities of Ni-doped germanium nanoclusters: a density functional modeling study. J Mol Model 2012; 19:1473-88. [DOI: 10.1007/s00894-012-1690-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2012] [Accepted: 11/12/2012] [Indexed: 10/27/2022]
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Ding XL, Li ZY, Meng JH, Zhao YX, He SG. Density-functional global optimization of (La2O3)n clusters. J Chem Phys 2012; 137:214311. [DOI: 10.1063/1.4769282] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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12
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Avaltroni F, Steinmann SN, Corminboeuf C. How are small endohedral silicon clusters stabilized? Phys Chem Chem Phys 2012; 14:14842-9. [DOI: 10.1039/c2cp42097j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Ivanov AS, Boldyrev AI. Reliable predictions of unusual molecules. Phys Chem Chem Phys 2012; 14:15943-52. [DOI: 10.1039/c2cp42877f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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