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Lam CD, Park S. Nanomechanical characterization of soft nanomaterial using atomic force microscopy. Mater Today Bio 2025; 31:101506. [PMID: 40018054 PMCID: PMC11867545 DOI: 10.1016/j.mtbio.2025.101506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Revised: 01/06/2025] [Accepted: 01/18/2025] [Indexed: 03/01/2025] Open
Abstract
Atomic force microscopy (AFM) is a promising method for generating high-spatial-resolution images, providing insightful perspectives on the nanomechanical attributes of soft matter, including cells, bacteria, viruses, proteins, and nanoparticles. AFM is widely used in biological and pharmaceutical sciences because it can scrutinize mechanical properties under physiological conditions. We comprehensively reviewed experimental techniques and fundamental mathematical models to investigate the mechanical properties, including elastic moduli and binding forces, of soft materials. To determine these mechanical properties, two-dimensional arrays of force-distance (f-d) curves are obtained through AFM indentation experiments using the force volume technique. For elasticity determination, models are divided into approach f-d curve-based models, represented by the Hertz model, and retract f-d curve-based models, exemplified by the Johnson-Kendall-Roberts and Derjaguin-Müller-Toporov models. Especially, the Chen, Tu, and Cappella models, developed from the Hertz model, are used for thin samples on hard substrates. Additionally, the establishment of physical or chemical bonds during indentation experiments, observable in retract f-d curves, is crucial for the adhesive properties of samples and binding affinity between antibodies (receptors) and antigens (ligands). Chemical force microscopy, single-molecule force spectroscopy, and single-cell force spectroscopy are primary AFM methods that provide a comprehensive view of such properties through retract curve analysis. Furthermore, this paper, structured into key thematic sections, also reviews the exemplary application of AFM across multiple scientific disciplines. Notably, cancer cells are softer than healthy cells, although more sophisticated investigations are required for prognostic applications. AFM also investigates how bacteria adapt to antibiotics, addressing antimicrobial resistance, and reveals that stiffer virus capsids indicate reduced infectivity, aiding in the development of new strategies to combat viral infections. Moreover, AFM paves the way for innovative therapeutic approaches in designing effective drug delivery systems by providing insights into the physical properties of soft nanoparticles and the binding affinity of target moieties. Our review provides researchers with representative studies applying AFM to a wide range of cross-disciplinary research.
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Affiliation(s)
- Chi-Dat Lam
- College of Pharmacy, Keimyung University, Daegu, 42601, Republic of Korea
| | - Soyeun Park
- College of Pharmacy, Keimyung University, Daegu, 42601, Republic of Korea
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Nemoz-Billet L, Balland M, Gilquin L, Gillet B, Stévant I, Guillon E, Hughes S, Carpentier G, Vaganay E, Sohm F, Misiak V, Gonzalez-Melo MJ, Koch M, Ghavi-Helm Y, Bretaud S, Ruggiero F. Dual topologies of myotomal collagen XV and Tenascin C act in concert to guide and shape developing motor axons. Proc Natl Acad Sci U S A 2024; 121:e2314588121. [PMID: 38502691 PMCID: PMC10990108 DOI: 10.1073/pnas.2314588121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 02/26/2024] [Indexed: 03/21/2024] Open
Abstract
During development, motor axons are guided toward muscle target by various extrinsic cues including extracellular matrix (ECM) proteins whose identities and cellular source remain poorly characterized. Here, using single-cell RNAseq of sorted GFP+ cells from smyhc1:gfp-injected zebrafish embryos, we unravel the slow muscle progenitors (SMP) pseudotemporal trajectory at the single-cell level and show that differentiating SMPs are a major source of ECM proteins. The SMP core-matrisome was characterized and computationally predicted to form a basement membrane-like structure tailored for motor axon guidance, including basement membrane-associated ECM proteins, as collagen XV-B, one of the earliest core-matrisome gene transcribed in differentiating SMPs and the glycoprotein Tenascin C. To investigate how contact-mediated guidance cues are organized along the motor path to exert their function in vivo, we used microscopy-based methods to analyze and quantify motor axon navigation in tnc and col15a1b knock-out fish. We show that motor axon shape and growth rely on the timely expression of the attractive cue Collagen XV-B that locally provides axons with a permissive soft microenvironment and separately organizes the repulsive cue Tenascin C into a unique functional dual topology. Importantly, bioprinted micropatterns that mimic this in vivo ECM topology were sufficient to drive directional motor axon growth. Our study offers evidence that not only the composition of ECM cues but their topology critically influences motor axon navigation in vertebrates with potential applications in regenerative medicine for peripheral nerve injury as regenerating nerves follow their original path.
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Affiliation(s)
- Laurie Nemoz-Billet
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Martial Balland
- LIPphy: Interdisciplinary Laboratory of Physics, Université Grenoble Alpes, CNRS, GrenobleF-38000, France
| | - Laurent Gilquin
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Benjamin Gillet
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Isabelle Stévant
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Emilie Guillon
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Sandrine Hughes
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Gilles Carpentier
- Gly-CRRET: Glycobiology, Cell Growth and Tissue Repair Research Unit, Laboratoire Gly-CRRET Faculté des Sciences et Technologie, Université Paris Est-Créteil-Val de Marne, Créteil Cedex94010, France
| | - Elisabeth Vaganay
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Frédéric Sohm
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Vladimir Misiak
- LIPphy: Interdisciplinary Laboratory of Physics, Université Grenoble Alpes, CNRS, GrenobleF-38000, France
| | - Mary-Julieth Gonzalez-Melo
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Manuel Koch
- Institute for Experimental Dental Research and Oral Musculoskeletal Biology, Center for Biochemistry, Medical Faculty, University of Cologne, Cologne50931, Germany
| | - Yad Ghavi-Helm
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Sandrine Bretaud
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
| | - Florence Ruggiero
- Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, UMR5242 CNRS, Université Claude Bernard-Lyon1, National Research Institute for Agriculture, Food and the Environment (INRAe) Unit under Contract (USC) 1370, Lyon69007, France
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Wu H, Zhang L, Zhao B, Yang W, Galluzzi M. Deep learning strategy for small dataset from atomic force microscopy mechano-imaging on macrophages phenotypes. Front Bioeng Biotechnol 2023; 11:1259979. [PMID: 37860624 PMCID: PMC10582561 DOI: 10.3389/fbioe.2023.1259979] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 09/08/2023] [Indexed: 10/21/2023] Open
Abstract
The cytoskeleton is involved during movement, shaping, resilience, and functionality in immune system cells. Biomarkers such as elasticity and adhesion can be promising alternatives to detect the status of cells upon phenotype activation in correlation with functionality. For instance, professional immune cells such as macrophages undergo phenotype functional polarization, and their biomechanical behaviors can be used as indicators for early diagnostics. For this purpose, combining the biomechanical sensitivity of atomic force microscopy (AFM) with the automation and performance of a deep neural network (DNN) is a promising strategy to distinguish and classify different activation states. To resolve the issue of small datasets in AFM-typical experiments, nanomechanical maps were divided into pixels with additional localization data. On such an enlarged dataset, a DNN was trained by multimodal fusion, and the prediction was obtained by voting classification. Without using conventional biomarkers, our algorithm demonstrated high performance in predicting the phenotype of macrophages. Moreover, permutation feature importance was employed to interpret the results and unveil the importance of different biophysical properties and, in turn, correlated this with the local density of the cytoskeleton. While our results were demonstrated on the RAW264.7 model cell line, we expect that our methodology could be opportunely customized and applied to distinguish different cell systems and correlate feature importance with biophysical properties to unveil innovative markers for diagnostics.
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Affiliation(s)
- Hao Wu
- School of Management Science and Engineering, Anhui University of Finance and Economics, Bengbu, Anhui, China
| | - Lei Zhang
- School of Management Science and Engineering, Anhui University of Finance and Economics, Bengbu, Anhui, China
| | - Banglei Zhao
- School of Management Science and Engineering, Anhui University of Finance and Economics, Bengbu, Anhui, China
| | - Wenjie Yang
- Shenzhen Institute of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
| | - Massimiliano Galluzzi
- Shenzhen Institute of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
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Farokh Payam A, Passian A. Imaging beyond the surface region: Probing hidden materials via atomic force microscopy. SCIENCE ADVANCES 2023; 9:eadg8292. [PMID: 37379392 DOI: 10.1126/sciadv.adg8292] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Accepted: 05/24/2023] [Indexed: 06/30/2023]
Abstract
Probing material properties at surfaces down to the single-particle scale of atoms and molecules has been achieved, but high-resolution subsurface imaging remains a nanometrology challenge due to electromagnetic and acoustic dispersion and diffraction. The atomically sharp probe used in scanning probe microscopy (SPM) has broken these limits at surfaces. Subsurface imaging is possible under certain physical, chemical, electrical, and thermal gradients present in the material. Of all the SPM techniques, atomic force microscopy has entertained unique opportunities for nondestructive and label-free measurements. Here, we explore the physics of the subsurface imaging problem and the emerging solutions that offer exceptional potential for visualization. We discuss materials science, electronics, biology, polymer and composite sciences, and emerging quantum sensing and quantum bio-imaging applications. The perspectives and prospects of subsurface techniques are presented to stimulate further work toward enabling noninvasive high spatial and spectral resolution investigation of materials including meta- and quantum materials.
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Affiliation(s)
- Amir Farokh Payam
- Nanotechnology and Integrated Bioengineering Centre, School of Engineering, Ulster University, Belfast, UK
| | - Ali Passian
- Quantum Computing and Sensing, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA
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Petit C, Karkhaneh Yousefi AA, Guilbot M, Barnier V, Avril S. AFM Stiffness Mapping in Human Aortic Smooth Muscle Cells. J Biomech Eng 2022; 144:1133331. [DOI: 10.1115/1.4053657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Indexed: 11/08/2022]
Abstract
Abstract
Aortic Smooth Muscle Cells (SMCs) play a vital role in maintaining mechanical homeostasis in the aorta. We recently found that SMCs of aneurysmal aortas apply larger traction forces than SMCs of healthy aortas. This result was explained by the significant increase of hypertrophic SMCs abundance in aneurysms. In the present study, we investigate whether the cytoskeleton stiffness of SMCs may also be altered in aneurysmal aortas. For that, we use Atomic Force Microscopy (AFM) nanoindentation with a specific mode that allows subcellular-resolution mapping of the local stiffness across a specified region of interest of the cell. Aortic SMCs from a commercial human lineage (AoSMCs, Lonza) and primary aneurysmal SMCs (AnevSMCs) are cultured in conditions promoting the development of their contractile apparatus, and seeded on hydrogels with stiffness properties of 12kPa and 25kPa. Results show that all SMC exhibit globally a lognormal stiffness distribution, with medians in the range 10-30 kPa. The mean of stiffness distributions is slightly higher in aneurysmal SMCs than in healthy cells (16 kPa versus 12 kPa) but the differences are not statistically significant due to the large dispersion of AFM nanoindentation stiffness. We conclude that the possible alterations previously found in aneurysmal SMCs do not affect significantly the AFM nanoindentation stiffness of their cytoskeleton.
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Affiliation(s)
- Claudie Petit
- Mines Saint-Etienne, Université de Lyon, INSERM, U 1059 SAINBIOSE, F - 42023 Saint-Etienne France
| | | | - Marine Guilbot
- Mines Saint-Etienne, Université de Lyon, INSERM, U 1059 SAINBIOSE, F - 42023 Saint-Etienne France
| | - Vincent Barnier
- Mines Saint-Etienne, Université de Lyon, CNRS, UMR 5307 LGF, F - 42023 Saint-Etienne France
| | - Stephane Avril
- Mines Saint-Etienne, Université de Lyon, INSERM, U 1059 SAINBIOSE, F - 42023 Saint-Etienne France
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Venturelli L, Kohler AC, Stupar P, Villalba MI, Kalauzi A, Radotic K, Bertacchi M, Dinarelli S, Girasole M, Pešić M, Banković J, Vela ME, Yantorno O, Willaert R, Dietler G, Longo G, Kasas S. A perspective view on the nanomotion detection of living organisms and its features. J Mol Recognit 2020; 33:e2849. [PMID: 32227521 DOI: 10.1002/jmr.2849] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 03/14/2020] [Accepted: 03/16/2020] [Indexed: 12/23/2022]
Abstract
The insurgence of newly arising, rapidly developing health threats, such as drug-resistant bacteria and cancers, is one of the most urgent public-health issues of modern times. This menace calls for the development of sensitive and reliable diagnostic tools to monitor the response of single cells to chemical or pharmaceutical stimuli. Recently, it has been demonstrated that all living organisms oscillate at a nanometric scale and that these oscillations stop as soon as the organisms die. These nanometric scale oscillations can be detected by depositing living cells onto a micro-fabricated cantilever and by monitoring its displacements with an atomic force microscope-based electronics. Such devices, named nanomotion sensors, have been employed to determine the resistance profiles of life-threatening bacteria within minutes, to evaluate, among others, the effect of chemicals on yeast, neurons, and cancer cells. The data obtained so far demonstrate the advantages of nanomotion sensing devices in rapidly characterizing microorganism susceptibility to pharmaceutical agents. Here, we review the key aspects of this technique, presenting its major applications. and detailing its working protocols.
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Affiliation(s)
- Leonardo Venturelli
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Anne-Céline Kohler
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Petar Stupar
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Maria I Villalba
- Centro de Investigación y Desarrollo en Fermentaciones Industriales (CINDEFI-CONICET-CCT La Plata), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina
| | - Aleksandar Kalauzi
- Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Belgrade, Serbia
| | - Ksenija Radotic
- Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Belgrade, Serbia
| | | | - Simone Dinarelli
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Marco Girasole
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Milica Pešić
- Department of Neurobiology, Institute for Biological Research "Siniša Stanković" National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Jasna Banković
- Department of Neurobiology, Institute for Biological Research "Siniša Stanković" National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Maria E Vela
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA-CONICET-CCT La Plata), Universidad Nacional de La Plata, La Plata, Argentina
| | - Osvaldo Yantorno
- Centro de Investigación y Desarrollo en Fermentaciones Industriales (CINDEFI-CONICET-CCT La Plata), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina
| | - Ronnie Willaert
- ARG VUB-UGent NanoMicrobiology, IJRG VUB-EPFL BioNanotechnology & NanoMedicine, Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.,Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium
| | - Giovanni Dietler
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Giovanni Longo
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Sandor Kasas
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.,Centre Universitaire Romand de Médecine Légale, UFAM, Université de Lausanne, Lausanne, Switzerland
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Stühn L, Fritschen A, Choy J, Dehnert M, Dietz C. Nanomechanical sub-surface mapping of living biological cells by force microscopy. NANOSCALE 2019; 11:13089-13097. [PMID: 31268074 DOI: 10.1039/c9nr03497h] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Atomic force microscopy allows for the nanomechanical surface characterization of a multitude of types of materials with highest spatial precision in various relevant environments. In recent years, researchers have refined this methodology to analyze living biological materials in vitro. The atomic force microscope thus has become an essential instrument for the (in many cases) non-destructive, high-resolution imaging of cells and visualization of their dynamic mechanical processes. Mapping force versus distance curves and the local evaluation of soft samples allow the operator to "see" beneath the sample surface and to capture the local mechanical properties. In this work, we combine atomic force microscopy with fluorescence microscopy to investigate cancerous epithelial breast cells in culture medium. With unprecedented spatial resolution, we provide tomographic images for the local elasticity of confluent layers of cells. For these particular samples, a layer of higher elastic modulus located directly beneath the cell membrane in comparison with the average elastic properties was observed. Strikingly, this layer appears to be perforated at unique locations of the sample surface of weakest mechanical properties where distinct features were visible permitting the tip to indent farthest into the cell's volume. We interpret this layer as the cell membrane mechanically supported by the components of the cytoskeleton that is populated with sites of integral membrane proteins. These proteins act as breaking points for the indenter thus explaining the mechanical weakness at these locations. In contrast, the highest mechanical strength of the cell was found at locations of the cell cores as cross-checked by fluorescence microscopy images of staining experiments, in particular at nucleoli sites as the cumulative elastic modulus there comprises cytoskeletal features and the tight packing ribosomal DNA of the cell.
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Affiliation(s)
- Lukas Stühn
- Physics of Surfaces, Institute of Materials Science, Technische Universität Darmstadt, Alarich-Weiss-Str. 2, 64287 Darmstadt, Germany.
| | - Anna Fritschen
- Physics of Surfaces, Institute of Materials Science, Technische Universität Darmstadt, Alarich-Weiss-Str. 2, 64287 Darmstadt, Germany.
| | - Joseph Choy
- Physics of Surfaces, Institute of Materials Science, Technische Universität Darmstadt, Alarich-Weiss-Str. 2, 64287 Darmstadt, Germany.
| | - Martin Dehnert
- Fakultät für Naturwissenschaften, Technische Universität Chemnitz, D-09107 Chemnitz, Germany
| | - Christian Dietz
- Physics of Surfaces, Institute of Materials Science, Technische Universität Darmstadt, Alarich-Weiss-Str. 2, 64287 Darmstadt, Germany.
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Tang G, Galluzzi M, Zhang B, Shen YL, Stadler FJ. Biomechanical Heterogeneity of Living Cells: Comparison between Atomic Force Microscopy and Finite Element Simulation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:7578-7587. [PMID: 30272980 DOI: 10.1021/acs.langmuir.8b02211] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Atomic force microscopy (AFM) indentation is a popular method for characterizing the micromechanical properties of soft materials such as living cells. However, the mechanical data obtained from deep indentation measurements can be difficult and problematic to interpret as a result of the complex geometry of a cell, the nonlinearity of indentation contact, and constitutive relations of heterogeneous hyperelastic soft components. Living MDA-MB-231 cells were indented by spherical probes to obtain morphological and mechanical data that were adopted to build an accurate finite element model (FEM) for a parametric study. Initially, a 2D-axisymmetric numerical model was constructed with the main purpose of understanding the effect of geometrical and mechanical properties of constitutive parts such as the cell body, nucleus, and lamellipodium. A series of FEM deformation fields were directly compared with atomic force spectroscopy in order to resolve the mechanical convolution of heterogeneous parts and quantify Young's modulus and the geometry of nuclei. Furthermore, a 3D finite element model was constructed to investigate indentation events located far from the axisymmetric geometry. In this framework, the joint FEM/AFM approach has provided a useful methodology and a comprehensive characterization of the heterogeneous structure of living cells, emphasizing the deconvolution of geometrical structure and the true elastic modulus of the cell nucleus.
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Affiliation(s)
- Guanlin Tang
- College of Materials Science and Engineering, Shenzhen Key Laboratory of Polymer Science and Technology, Guangdong Research Center for Interfacial Engineering of Functional Materials , Shenzhen University , Shenzhen 518055 , PR China
| | - Massimiliano Galluzzi
- College of Materials Science and Engineering, Shenzhen Key Laboratory of Polymer Science and Technology, Guangdong Research Center for Interfacial Engineering of Functional Materials , Shenzhen University , Shenzhen 518055 , PR China
- Shenzhen Key Laboratory of Nanobiomechanics , Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences , Shenzhen 518055 , Guangdong , China
- CIMAINA and Dipartimento di Fisica , Università degli Studi di Milano , via Celoria 16 , 20133 Milano , Italy
| | - Bokai Zhang
- Shenzhen Key Laboratory of Nanobiomechanics , Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences , Shenzhen 518055 , Guangdong , China
| | - Yu-Lin Shen
- Department of Mechanical Engineering , University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Florian J Stadler
- College of Materials Science and Engineering, Shenzhen Key Laboratory of Polymer Science and Technology, Guangdong Research Center for Interfacial Engineering of Functional Materials , Shenzhen University , Shenzhen 518055 , PR China
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9
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Tian Y, Wu Y, Liu L, He L, Gao J, Zhou L, Yu F, Yu S, Wang H. The structural characteristics of mononuclear-macrophage membrane observed by atomic force microscopy. J Struct Biol 2019; 206:314-321. [DOI: 10.1016/j.jsb.2019.04.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 03/09/2019] [Accepted: 04/01/2019] [Indexed: 01/26/2023]
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10
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Janel S, Popoff M, Barois N, Werkmeister E, Divoux S, Perez F, Lafont F. Stiffness tomography of eukaryotic intracellular compartments by atomic force microscopy. NANOSCALE 2019; 11:10320-10328. [PMID: 31106790 DOI: 10.1039/c8nr08955h] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Precise localization and biophysical characterization of cellular structures is a key to the understanding of biological processes happening both inside the cell and at the cell surface. Atomic force microscopy is a powerful tool to study the cell surface - topography, elasticity, viscosity, interactions - and also the viscoelastic behavior of the underlying cytoplasm, cytoskeleton or the nucleus. Here, we demonstrate the ability of atomic force microscopy to also map and characterize organelles and microorganisms inside cells, at the nanoscale, by combining stiffness tomography with super-resolution fluorescence and electron microscopy. By using this correlative approach, we could both identify and characterize intracellular compartments. The validation of this approach was performed by monitoring the stiffening effect according to the metabolic status of the mitochondria in living cells in real-time.
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Affiliation(s)
- Sébastien Janel
- Center for Infection and Immunity of Lille, CNRS UMR 8204, INSERM U1019, CHU Lille, Institut Pasteur de Lille, Univ Lille, F-59000 Lille, France.
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11
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Pellequer JL, Parot P, Navajas D, Kumar S, Svetličić V, Scheuring S, Hu J, Li B, Engler A, Sousa S, Lekka M, Szymoński M, Schillers H, Odorico M, Lafont F, Janel S, Rico F. Fifteen years of Servitude et Grandeur
to the application of a biophysical technique in medicine: The tale of AFMBioMed. J Mol Recognit 2018; 32:e2773. [DOI: 10.1002/jmr.2773] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
| | | | - Daniel Navajas
- Institute for Bioengineering of Catalonia and CIBER de Enfermedades Respiratorias; Universitat de Barcelona; Barcelona Spain
| | - Sanjay Kumar
- Departments of Bioengineering and Chemical & Biomolecular Engineering; University of California, Berkeley; Berkeley California USA
| | | | - Simon Scheuring
- Department of Anesthesiology, Department of Physiology and Biophysics; Weill Cornell Medicine; New York City New York USA
| | - Jun Hu
- Shanghai Advanced Research Institute; Chinese Academy of Sciences; Shanghai China
- Shanghai Institute of Applied Physics; Chinese Academy of Sciences; Shanghai China
| | - Bin Li
- Shanghai Advanced Research Institute; Chinese Academy of Sciences; Shanghai China
- Shanghai Institute of Applied Physics; Chinese Academy of Sciences; Shanghai China
| | - Adam Engler
- Department of Bioengineering; University of California San Diego; La Jolla California USA
| | - Susana Sousa
- i3S-Instituto de Investigação e Inovação em Saúde; Universidade do Porto; Porto Portugal
- INEB-Instituto de Engenharia Biomédica; Universidade do Porto; Porto Portugal
- ISEP-Instituto Superior de Engenharia; Politécnico do Porto; Portugal
| | - Małgorzata Lekka
- Institute of Nuclear Physics Polish Academy of Sciences; Kraków Poland
| | - Marek Szymoński
- Center for Nanometer-scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science; Jagiellonian University; Kraków Poland
| | | | - Michael Odorico
- Institut de Chimie Séparative de Marcoule (ICSM), CEA, CNRS, ENSCM, Univ Montpellier, Marcoule; Montpellier France
| | - Frank Lafont
- Center for Infection and Immunity of Lille, CNRS UMR 8204, INSERM U1019, CHU Lille, Institut Pasteur de Lille, Univ Lille; Lille France
| | - Sebastien Janel
- Center for Infection and Immunity of Lille, CNRS UMR 8204, INSERM U1019, CHU Lille, Institut Pasteur de Lille, Univ Lille; Lille France
| | - Felix Rico
- LAI, U1067, Aix-Marseille Univ, CNRS, INSERM; Marseille France
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12
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Atomic force microscopy methodology and AFMech Suite software for nanomechanics on heterogeneous soft materials. Nat Commun 2018; 9:3584. [PMID: 30181577 PMCID: PMC6123404 DOI: 10.1038/s41467-018-05902-1] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 07/13/2018] [Indexed: 12/13/2022] Open
Abstract
Atomic force microscopy has proven to be a valuable technique to characterize the mechanical and morphological properties of heterogeneous soft materials such as biological specimens in liquid environment. Here we propose a 3-step method in order to investigate biological specimens where heterogeneity hinder a quantitative characterization: (1) precise AFM calibration, (2) nano-indentation in force volume mode, (3) array of finite element simulations built from AFM indentation events. We combine simulations to determine internal geometries, multi-layer material properties, and interfacial friction. In order to easily perform this analysis from raw AFM data to simulation comparison, we propose a standalone software, AFMech Suite comprising five interacting interfaces for simultaneous calibration, morphology, adhesion, mechanical, and simulation analysis. We test the methodology on soft hydrogels with hard spherical inclusions, as a soft-matter model system. Finally, we apply the method on E. coli bacteria supported on soft/hard hydrogels to prove usefulness in biological field. Atomic force microscopy is an indispensable method in characterizing soft materials but the complexity of biological samples makes reproducible measurements difficult. Here the authors use a 3-step method to investigate biological specimens in which vertical and lateral heterogeneity hinders a precise quantitative characterization.
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13
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Milani P, Chlasta J, Abdayem R, Kezic S, Haftek M. Changes in nano-mechanical properties of human epidermal cornified cells depending on their proximity to the skin surface. J Mol Recognit 2018; 31:e2722. [DOI: 10.1002/jmr.2722] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Revised: 03/14/2018] [Accepted: 04/04/2018] [Indexed: 12/23/2022]
Affiliation(s)
| | | | - Rawad Abdayem
- CNRS UMR5305, Laboratory of Tissue Biology and Therapeutic Engineering (LBTI); Lyon France
- L'Oréal, R&I, Aulnay sous Bois; France
| | - Sanja Kezic
- Coronel Institute of Occupational Health, Amsterdam Public Health Research Institute, Academic Medical Center; University of Amsterdam; Amsterdam The Netherlands
| | - Marek Haftek
- CNRS UMR5305, Laboratory of Tissue Biology and Therapeutic Engineering (LBTI); Lyon France
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14
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Angeloni L, Reggente M, Passeri D, Natali M, Rossi M. Identification of nanoparticles and nanosystems in biological matrices with scanning probe microscopy. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2018; 10:e1521. [PMID: 29665287 DOI: 10.1002/wnan.1521] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 02/26/2018] [Accepted: 03/10/2018] [Indexed: 01/22/2023]
Abstract
Identification of nanoparticles and nanosystems into cells and biological matrices is a hot research topic in nanobiotechnologies. Because of their capability to map physical properties (mechanical, electric, magnetic, chemical, or optical), several scanning probe microscopy based techniques have been proposed for the subsurface detection of nanomaterials in biological systems. In particular, atomic force microscopy (AFM) can be used to reveal stiff nanoparticles in cells and other soft biomaterials by probing the sample mechanical properties through the acquisition of local indentation curves or through the combination of ultrasound-based methods, like contact resonance AFM (CR-AFM) or scanning near field ultrasound holography. Magnetic force microscopy can detect magnetic nanoparticles and other magnetic (bio)materials in nonmagnetic biological samples, while electric force microscopy, conductive AFM, and Kelvin probe force microscopy can reveal buried nanomaterials on the basis of the differences between their electric properties and those of the surrounding matrices. Finally, scanning near field optical microscopy and tip-enhanced Raman spectroscopy can visualize buried nanostructures on the basis of their optical and chemical properties. Despite at a still early stage, these methods are promising for detection of nanomaterials in biological systems as they could be truly noninvasive, would not require destructive and time-consuming specific sample preparation, could be performed in vitro, on alive samples and in water or physiological environment, and by continuously imaging the same sample could be used to dynamically monitor the diffusion paths and interaction mechanisms of nanomaterials into cells and biological systems. This article is categorized under: Diagnostic Tools > In Vivo Nanodiagnostics and Imaging Nanotechnology Approaches to Biology > Nanoscale Systems in Biology.
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Affiliation(s)
- Livia Angeloni
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome, Italy
| | - Melania Reggente
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome, Italy
| | - Daniele Passeri
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome, Italy
| | - Marco Natali
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome, Italy
| | - Marco Rossi
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome, Italy.,Research Center for Nanotechnology Applied to Engineering of Sapienza University of Rome (CNIS), Rome, Italy
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15
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Dehnert M, Magerle R. 3D depth profiling of the interaction between an AFM tip and fluid polymer solutions. NANOSCALE 2018. [PMID: 29532845 DOI: 10.1039/c8nr00299a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
In the atomic force microscopy (AFM) investigation of soft polymers and liquids, the tip-sample interaction is dominated by long-range van der Waals forces, capillary forces and adhesion. Furthermore, the tip can indent several tens of nanometres into the surface, and it can pull off a polymer filament from the surface. Therefore, measuring the unperturbed shape of a polymeric fluid can be challenging. Here, we study the tip-sample interaction with polystyrene droplets swollen in chloroform vapour, where we can utilize the solvent vapour concentration to adjust the specimen's mechanical properties from a stiff solid to a fluid film. With the same AFM tip, we use two different AFM force spectroscopy methods to measure three-dimensional (3D) depth profiles of the tip-sample interaction: force-distance (FD) curves and amplitude-phase-distance (APD) curves. The 3D depth profiles reconstructed from FD and APD measurements provide detailed insight into the tip-sample interaction mechanism for a fluid polymer solution. The fluid's intrinsic relaxation time, which we measure with an AFM-based step-strain experiment, is essential for understanding the tip-sample interaction mechanism. Furthermore, measuring 3D depth profiles and using APD data to reconstruct the unperturbed surface comprise a versatile methodology for obtaining accurate dimensional measurements of fluid and gel-like objects on the nanometre scale.
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Affiliation(s)
- Martin Dehnert
- Fakultät für Naturwissenschaften, Technische Universität Chemnitz, D-09107 Chemnitz, Germany.
| | - Robert Magerle
- Fakultät für Naturwissenschaften, Technische Universität Chemnitz, D-09107 Chemnitz, Germany.
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16
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Reggente M, Natali M, Passeri D, Lucci M, Davoli I, Pourroy G, Masson P, Palkowski H, Hangen U, Carradò A, Rossi M. Multiscale mechanical characterization of hybrid Ti/PMMA layered materials. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.05.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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17
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Reggente M, Passeri D, Angeloni L, Scaramuzzo FA, Barteri M, De Angelis F, Persiconi I, De Stefano ME, Rossi M. Detection of stiff nanoparticles within cellular structures by contact resonance atomic force microscopy subsurface nanomechanical imaging. NANOSCALE 2017; 9:5671-5676. [PMID: 28422233 DOI: 10.1039/c7nr01111c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Detecting stiff nanoparticles buried in soft biological matrices by atomic force microscopy (AFM) based techniques represents a new frontier in the field of scanning probe microscopies, originally developed as surface characterization methods. Here we report the detection of stiff (magnetic) nanoparticles (NPs) internalized in cells by using contact resonance AFM (CR-AFM) employed as a potentially non-destructive subsurface characterization tool. Magnetite (Fe3O4) NPs were internalized in microglial cells from cerebral cortices of mouse embryos of 18 days by phagocytosis. Nanomechanical imaging of cells was performed by detecting the contact resonance frequencies (CRFs) of an AFM cantilever held in contact with the sample. Agglomerates of NPs internalized in cells were visualized on the basis of the local increase in the contact stiffness with respect to the surrounding biological matrix. A second AFM-based technique for nanomechanical imaging, i.e., HarmoniX™, as well as magnetic force microscopy and light microscopy were used to confirm the CR-AFM results. Thus, CR-AFM was demonstrated as a promising technique for subsurface imaging of nanomaterials in biological samples.
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Affiliation(s)
- Melania Reggente
- Department of Basic and Applied Sciences for Engineering, SAPIENZA University of Rome, Rome, Italy.
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18
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Pectin-coated boron nitride nanotubes: In vitro cyto-/immune-compatibility on RAW 264.7 macrophages. Biochim Biophys Acta Gen Subj 2016; 1860:775-84. [DOI: 10.1016/j.bbagen.2016.01.020] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2015] [Revised: 01/11/2016] [Accepted: 01/24/2016] [Indexed: 11/23/2022]
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19
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Dinarelli S, Girasole M, Kasas S, Longo G. Nanotools and molecular techniques to rapidly identify and fight bacterial infections. J Microbiol Methods 2016; 138:72-81. [PMID: 26806415 DOI: 10.1016/j.mimet.2016.01.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Revised: 01/13/2016] [Accepted: 01/13/2016] [Indexed: 12/22/2022]
Abstract
Reducing the emergence and spread of antibiotic-resistant bacteria is one of the major healthcare issues of our century. In addition to the increased mortality, infections caused by multi-resistant bacteria drastically enhance the healthcare costs, mainly because of the longer duration of illness and treatment. While in the last 20years, bacterial identification has been revolutionized by the introduction of new molecular techniques, the current phenotypic techniques to determine the susceptibilities of common Gram-positive and Gram-negative bacteria require at least two days from collection of clinical samples. Therefore, there is an urgent need for the development of new technologies to determine rapidly drug susceptibility in bacteria and to achieve faster diagnoses. These techniques would also lead to a better understanding of the mechanisms that lead to the insurgence of the resistance, greatly helping the quest for new antibacterial systems and drugs. In this review, we describe some of the tools most currently used in clinical and microbiological research to study bacteria and to address the challenge of infections. We discuss the most interesting advancements in the molecular susceptibility testing systems, with a particular focus on the many applications of the MALDI-TOF MS system. In the field of the phenotypic characterization protocols, we detail some of the most promising semi-automated commercial systems and we focus on some emerging developments in the field of nanomechanical sensors, which constitute a step towards the development of rapid and affordable point-of-care testing devices and techniques. While there is still no innovative technique that is capable of completely substituting for the conventional protocols and clinical practices, many exciting new experimental setups and tools could constitute the basis of the standard testing package of future microbiological tests.
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Affiliation(s)
- S Dinarelli
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy
| | - M Girasole
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy
| | - S Kasas
- Ecole Polytechnique Fédérale de Lausanne, Laboratoire de Physique de la Matière Vivante, Lausanne, Switzerland; Département des Neurosciences Fondamentales, Université de Lausanne, Lausanne, Switzerland
| | - G Longo
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy.
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20
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El-Kirat-Chatel S, Dufrêne YF. Nanoscale adhesion forces between the fungal pathogen Candida albicans and macrophages. NANOSCALE HORIZONS 2016; 1:69-74. [PMID: 32260605 DOI: 10.1039/c5nh00049a] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The development of fungal infections is tightly controlled by the interaction of fungal pathogens with host immune cells. While the recognition of specific fungal cell wall components by immune receptors has been widely investigated, the molecular forces involved are not known. In this Communication, we show the ability of single-cell force spectroscopy to quantify the specific adhesion forces between the fungal pathogen Candida albicans and macrophages. The Candida-macrophage adhesion force is strong, up to ∼3000 pN, and corresponds to multiple cumulative bonds between lectin receptors expressed on the macrophage membrane and mannan carbohydrates on the fungal cell surface. Adhesion force signatures show constant force plateaus, up to >100 μm long, reflecting the extraction of elongated tethers from the macrophage membrane, a phenomenon which may increase the duration of intercellular adhesion. Adhesion strengthens with time, suggesting that the macrophage membrane engulfs the pathogen quickly after initial contact, leading to its internalization. The force nanoscopy method developed here holds great promise for understanding and controlling the early stages of microbe-immune interactions.
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Affiliation(s)
- Sofiane El-Kirat-Chatel
- Institute of Life Sciences, Université catholique de Louvain, Croix du Sud 4-5, bte L7.07.06, 1348 Louvain-la-Neuve, Belgium.
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21
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Liu Y, Wang Z, Wang X, Huang Y. Quantitative analysis of dynamic adhesion properties in human hepatocellular carcinoma cells with fullerenol. Micron 2015; 79:74-83. [DOI: 10.1016/j.micron.2015.08.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Revised: 07/27/2015] [Accepted: 08/22/2015] [Indexed: 11/17/2022]
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22
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Substrate elasticity regulates the behavior of human monocyte-derived macrophages. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2015; 45:301-9. [PMID: 26613613 DOI: 10.1007/s00249-015-1096-8] [Citation(s) in RCA: 101] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Accepted: 11/04/2015] [Indexed: 01/25/2023]
Abstract
Macrophages play a key role in atherosclerosis, cancer, and in the response to implanted medical devices. In each of these situations, the mechanical environment of a macrophage can vary from soft to stiff. However, how stiffness affects macrophage behavior remains uncertain. Using substrates of varying stiffness, we show macrophage phenotype and function depends on substrate stiffness. Notably, the cell area increases slightly from a sphere after 18 h on substrates mimicking healthy arterial stiffness (1-5 kPa), whereas macrophages on stiffer substrates (280 kPa-70 GPa) increased in area by nearly eight-fold. Macrophage migration is random regardless of substrate stiffness. The total average track speed was 7.8 ± 0.5 μm/h, with macrophages traveling fastest on the 280-kPa substrate (12.0 ± 0.5 μm/h) and slowest on the 3-kPa substrate (5.0 ± 0.4 μm/h). In addition F-actin organization in macrophages depends on substrate stiffness. On soft substrates, F-actin is spread uniformly throughout the cytoplasm, whereas on stiff substrates F-actin is functionalized into stress fibers. The proliferation rate of macrophages was faster on stiff substrates. Cells plated on the 280-kPa gel had a significantly shorter doubling time than those plated on the softer substrate. However, the ability of macrophages to phagocytose 1-μm particles did not depend on substrate stiffness. In conclusion, the results herein show macrophages are mechanosensitive; they respond to changes in stiffness by modifying their area, migration speed, actin organization, and proliferation rate. These results are important to understanding how macrophages respond in complex mechanical environments such as an atherosclerotic plaque.
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23
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Gaspar D, Freire JM, Pacheco TR, Barata JT, Castanho MA. Apoptotic human neutrophil peptide-1 anti-tumor activity revealed by cellular biomechanics. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2015; 1853:308-16. [DOI: 10.1016/j.bbamcr.2014.11.006] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 10/17/2014] [Accepted: 11/04/2014] [Indexed: 12/31/2022]
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24
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Grimm KB, Oberleithner H, Fels J. Fixed endothelial cells exhibit physiologically relevant nanomechanics of the cortical actin web. NANOTECHNOLOGY 2014; 25:215101. [PMID: 24786855 DOI: 10.1088/0957-4484/25/21/215101] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
It has been unknown whether cells retain their mechanical properties after fixation. Therefore, this study was designed to compare the stiffness properties of the cell cortex (the 50-100 nm thick zone below the plasma membrane) before and after fixation. Atomic force microscopy was used to acquire force indentation curves from which the nanomechanical cell properties were derived. Cells were pretreated with different concentrations of actin destabilizing agent cytochalasin D, which results in a gradual softening of the cell cortex. Then cells were studied 'alive' or 'fixed'. We show that the cortical stiffness of fixed endothelial cells still reports functional properties of the actin web qualitatively comparable to those of living cells. Myosin motor protein activity, tested by blebbistatin inhibition, can only be detected, in terms of cortical mechanics, in living but not in fixed cells. We conclude that fixation interferes with motor proteins while maintaining a functional cortical actin web. Thus, fixation of cells opens up the prospect of differentially studying the actions of cellular myosin and actin.
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Affiliation(s)
- Kai Bodo Grimm
- Institute of Physiology II, University of Münster, Robert-Koch-Str. 27b, 48149 Münster, Germany
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25
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Antibiotic-induced modifications of the stiffness of bacterial membranes. J Microbiol Methods 2013; 93:80-4. [DOI: 10.1016/j.mimet.2013.01.022] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Revised: 01/31/2013] [Accepted: 01/31/2013] [Indexed: 11/23/2022]
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26
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Imaging living cells surface and quantifying its properties at high resolution using AFM in QI™ mode. Micron 2013; 48:26-33. [PMID: 23522742 DOI: 10.1016/j.micron.2013.02.003] [Citation(s) in RCA: 120] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Revised: 02/06/2013] [Accepted: 02/07/2013] [Indexed: 11/21/2022]
Abstract
Since the last 10 years, AFM has become a powerful tool to study biological samples. However, the classical modes offered (imaging or tapping mode) often damage sample that are too soft or loosely immobilized. If imaging and mechanical properties are required, it requests long recording time as two different experiments must be conducted independently. In this study we compare the new QI™ mode against contact imaging mode and force volume mode, and we point out its benefit in the new challenges in biology on six different models: Escherichia coli, Candida albicans, Aspergillus fumigatus, Chinese hamster ovary cells and their isolated nuclei, and human colorectal tumor cells.
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27
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Radotić K, Roduit C, Simonović J, Hornitschek P, Fankhauser C, Mutavdžić D, Steinbach G, Dietler G, Kasas S. Atomic force microscopy stiffness tomography on living Arabidopsis thaliana cells reveals the mechanical properties of surface and deep cell-wall layers during growth. Biophys J 2013; 103:386-394. [PMID: 22947854 DOI: 10.1016/j.bpj.2012.06.046] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Revised: 05/29/2012] [Accepted: 06/26/2012] [Indexed: 12/18/2022] Open
Abstract
Cell-wall mechanical properties play a key role in the growth and the protection of plants. However, little is known about genuine wall mechanical properties and their growth-related dynamics at subcellular resolution and in living cells. Here, we used atomic force microscopy (AFM) stiffness tomography to explore stiffness distribution in the cell wall of suspension-cultured Arabidopsis thaliana as a model of primary, growing cell wall. For the first time that we know of, this new imaging technique was performed on living single cells of a higher plant, permitting monitoring of the stiffness distribution in cell-wall layers as a function of the depth and its evolution during the different growth phases. The mechanical measurements were correlated with changes in the composition of the cell wall, which were revealed by Fourier-transform infrared (FTIR) spectroscopy. In the beginning and end of cell growth, the average stiffness of the cell wall was low and the wall was mechanically homogenous, whereas in the exponential growth phase, the average wall stiffness increased, with increasing heterogeneity. In this phase, the difference between the superficial and deep wall stiffness was highest. FTIR spectra revealed a relative increase in the polysaccharide/lignin content.
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Affiliation(s)
- Ksenija Radotić
- Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia.
| | - Charles Roduit
- Département de Biologie Cellulaire et de Morphologie, Université de Lausanne, Lausanne, Switzerland
| | - Jasna Simonović
- Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia
| | | | | | - Dragosav Mutavdžić
- Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia
| | - Gabor Steinbach
- Hungarian Academy of Sciences, Biological Research Centre, Szeged, Hungary
| | - Giovanni Dietler
- Laboratoire de Physique de la Matière Vivante, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Sandor Kasas
- Laboratoire de Physique de la Matière Vivante, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Département de Biologie Cellulaire et de Morphologie, Université de Lausanne, Lausanne, Switzerland
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