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Roy PK, Chaudhuri P, Vemparala S. Effect of ring stiffness and ambient pressure on the dynamical slowdown in ring polymers. SOFT MATTER 2022; 18:2959-2967. [PMID: 35348146 DOI: 10.1039/d1sm01754c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Using extensive molecular dynamics simulations, we investigate the slowdown of dynamics in a 3D system of ring polymers by varying the ambient pressure and the stiffness of the rings. Our study demonstrates that the stiffness of the rings determines the dynamics of the ring polymers, leading to glassiness at lower pressures for stiffer rings. The threading of the ring polymers, a unique feature that emerges only due to the topological nature of such polymers in three dimensions, is shown to be the determinant feature of dynamical slowdown, albeit only in a certain stiffness range. Our results suggest a possible framework for exploring the phase space spanned by ring stiffness and pressure to obtain spontaneously emerging topologically constrained polymer glasses.
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Affiliation(s)
- Projesh Kumar Roy
- The Institute of Mathematical Sciences, C. I. T. Campus, Taramani, Chennai 600113, India.
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Pinaki Chaudhuri
- The Institute of Mathematical Sciences, C. I. T. Campus, Taramani, Chennai 600113, India.
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Satyavani Vemparala
- The Institute of Mathematical Sciences, C. I. T. Campus, Taramani, Chennai 600113, India.
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
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Chen J, Chen X, Sun LZ, Xu XJ, Luo MB. Translocation of a looped polymer threading through a nanopore. SOFT MATTER 2021; 17:4342-4351. [PMID: 33908563 DOI: 10.1039/d1sm00007a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Recent experiments reported that the complicated translocation dynamics of a looped DNA chain through a nanopore can be detected by ionic current blockade profiles. Inspired by the experimental results, we systematically study the translocation dynamics of a looped polymer, formed by three building blocks of a loop in the middle and two tails of the same length connected with the loop, by using Langevin dynamics simulations. Based on two entering modes (tail-leading and loop-leading) and three translocation orders (loop-tail-tail, tail-loop-tail, and tail-tail-loop), the translocation of the looped polymer is classified into six translocation pathways, corresponding to different current blockade profiles. The probabilities of the six translocation pathways are dependent on the loop length, polymer length, and pore radius. Moreover, the translocation times of the entire polymer and the loop are investigated. We find that the two translocation times show different dependencies on the translocation pathways and on the lengths of the loop and the entire polymer.
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Affiliation(s)
- Jia Chen
- Department of Physics, Zhejiang University, Hangzhou 310027, China.
| | - Xian Chen
- Department of Physics, Zhejiang University, Hangzhou 310027, China.
| | - Li-Zhen Sun
- Department of Applied Physics, Zhejiang University of Technology, Hangzhou 310023, China.
| | - Xiao-Jun Xu
- Institute of Bioinformatics and Medical Engineering, Jiangsu University of Technology, Changzhou, 213001, China
| | - Meng-Bo Luo
- Department of Physics, Zhejiang University, Hangzhou 310027, China.
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Patel L, Mansour O, Bryant H, Abdullahi W, Dalgliesh RM, Griffiths PC. Interaction of Low Molecular Weight Poly(diallyldimethylammonium chloride) and Sodium Dodecyl Sulfate in Low Surfactant-Polyelectrolyte Ratio, Salt-Free Solutions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:8815-8825. [PMID: 32668905 DOI: 10.1021/acs.langmuir.0c01149] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Coacervation is widely used in formulations to induce a beneficial character to the formulation, but nonequilibrium effects are often manifest. Electrophoretic NMR (eNMR), pulsed-gradient spin-echo NMR (PGSE-NMR), and small-angle neutron scattering (SANS) have been used to quantify the interaction between low molecular cationic poly(diallyldimethylammonium chloride) (PDADMAC) and the anionic surfactant sodium dodecyl sulfate (SDS) in aqueous solution as a model for the precursor state to such nonequilibrium processes. The NMR data show that, within the low surfactant concentration one-phase region, an increasing surfactant concentration leads to a reduction in the charge on the polymer and a collapse of its solution conformation, attaining minimum values coincident with the macroscopic phase separation boundary. Interpretation of the scattering data reveals how the rodlike polymer changes over the same surfactant concentration window, with no discernible fingerprint of micellar type aggregates, but rather with the emergence of disklike and lamellar structures. At the highest surfactant concentration, the emergence of a weak Bragg peak in both the polymer and surfactant scattering suggests these precursor disk and lamellar structures evolve into paracrystalline stacks which ultimately phase separate. Addition of the nonionic surfactant hexa(ethylene glycol) monododecyl ether (C12E6) to the system seems to have little effect on the PDADMAC/SDS interaction as determined by NMR, merely displacing the observed behavior to lower SDS concentrations, commensurate with the total SDS present in the system. In other words, PDADMAC causes the disruption of the mixed SDS/C12E6 micelle, leading to SDS-rich PDADAMC/surfactant complexes coexisting with C12E6-rich micelles in solution.
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Affiliation(s)
- Leesa Patel
- Faculty of Engineering and Science, School of Science, University of Greenwich, Chatham, ME4 4TB, U.K
| | - Omar Mansour
- Faculty of Health and Life Sciences, Leicester School of Pharmacy, De Montfort University, The Gateway, Leicester, LE1 9BH, U.K
| | - Hannah Bryant
- Faculty of Engineering and Science, School of Science, University of Greenwich, Chatham, ME4 4TB, U.K
| | - Wasiu Abdullahi
- Faculty of Engineering and Science, School of Science, University of Greenwich, Chatham, ME4 4TB, U.K
| | - Robert M Dalgliesh
- ISIS Neutron and Muon Source, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, U.K
| | - Peter C Griffiths
- Faculty of Engineering and Science, School of Science, University of Greenwich, Chatham, ME4 4TB, U.K
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