Rapid estimation of patient-specific organ doses using a deep learning network

Evolved size-specific dose estimates for patient-specific organ doses from chest CT scans based on hybrid patient size vectors

This study aims to develop a neural network-based method for predicting patient-specific organ doses from chest CT scans, utilizing hybrid patient size vectors for enhanced computational efficiency, accuracy, and generality. A dataset of 705 chest CT scans was retrospectively analyzed to construct predictive models for organ dose estimation. The proposed approach employs high dimensional hybrid vectors to represent patient size, combining muti-slice parameters regarding lateral dimension, anteroposterior dimension, and water-equivalent diameter (Dw). These vectors are used to train fully-connected neural networks, which are designed to correlate high-dimensional patient size features with reference organ doses obtained from Monte Carlo simulations. The performance of the neural networks was evaluated using separate test cohorts, with metrics such as mean absolute percentage error (MAPE) and coefficient of determination (R²) to evaluate predictive accuracy and generality. For the left lung, right lung, heart, and spinal cord, the trained neural networks respectively achieve MAPE values of 2.94%, 2.79%, 7.04%, and 6.76%, and R² values of 0.98, 0.99, 0.93, and 0.91. The maximal discrepancy between reference and predicted values is less than 10% for the left and right lungs, and less than 20% for the heart and spinal cord. With 5-fold cross-validation, the maximal perturbation does not exceed 1% in MAPE and 0.05 in R². By incorporating hybrid patient size vectors, the neural network models achieve superior accuracy in organ dose estimation compared with traditional size specific dose estimates, paving the way for online swift organ dose screening in clinical practice.

A machine learning-based pipeline for multi-organ/tissue patient-specific radiation dosimetry in CT

OBJECTIVES

To develop a machine learning-based pipeline for multi-organ/tissue personalized radiation dosimetry in CT.

MATERIALS AND METHODS

For the study, 95 chest CT scans and 85 abdominal CT scans were collected retrospectively. For each CT scan, a personalized Monte Carlo (MC) simulation was carried out. The produced 3D dose distributions and the respective CT examinations were utilized for the development of organ/tissue-specific dose prediction deep neural networks (DNNs). A pipeline that integrates a robust open-source organ segmentation tool with the dose prediction DNNs was developed for the automatic estimation of radiation doses for 30 organs/tissues including sub-volumes of the heart and lungs. The accuracy and time efficiency of the presented methodology was assessed. Statistical analysis (t-tests) was conducted to determine if the differences between the ground truth organ/tissue radiation dose estimates and the respective dose predictions were significant.

RESULTS

The lowest median percentage differences between MC-derived organ/tissue doses and DNN dose predictions were observed for the lung vessels (4.3%), small bowel (4.7%), pulmonary artery (4.7%), and colon (5.2%), while the highest differences were observed for the right lung's upper lobe (13.3%), spleen (13.1%), pancreas (12.1%), and stomach (11.6%). Statistical analysis showed that the differences were not significant (p-value > 0.18). Furthermore, the mean inference time, regarding the validation cohort, of the developed methodology was 77.0 ± 11.0 s.

CONCLUSION

The proposed workflow enables fast and accurate organ/tissue radiation dose estimations. The developed algorithms and dose prediction DNNs are publicly available ( https://github.com/eltzanis/multi-structure-CT-dosimetry ).

CLINICAL RELEVANCE STATEMENT

The accuracy and time efficiency of the developed pipeline compose a useful tool for personalized dosimetry in CT. By adopting the proposed workflow, institutions can utilize an automated pipeline for patient-specific dosimetry in CT.

KEY POINTS

Personalized dosimetry is ideal, but is time-consuming. The proposed pipeline composes a tool for facilitating patient-specific CT dosimetry in routine clinical practice. The developed workflow integrates a robust open-source segmentation tool with organ/tissue-specific dose prediction neural networks.

Automated estimation of individualized organ-specific dose and noise from clinical CT scans

Objective. Radiation dose and diagnostic image quality are opposing constraints in x-ray computed tomography (CT). Conventional methods do not fully account for organ-level radiation dose and noise when considering radiation risk and clinical task. In this work, we develop a pipeline to generate individualized organ-specific dose and noise at desired dose levels from clinical CT scans.Approach. To estimate organ-specific dose and noise, we compute dose maps, noise maps at desired dose levels and organ segmentations. In our pipeline, dose maps are generated using Monte Carlo simulation. The noise map is obtained by scaling the inserted noise in synthetic low-dose emulation in order to avoid anatomical structures, where the scaling coefficients are empirically calibrated. Organ segmentations are generated by a deep learning-based method (TotalSegmentator). The proposed noise model is evaluated on a clinical dataset of 12 CT scans, a phantom dataset of 3 uniform phantom scans, and a cross-site dataset of 26 scans. The accuracy of deep learning-based segmentations for organ-level dose and noise estimates was tested using a dataset of 41 cases with expert segmentations of six organs: lungs, liver, kidneys, bladder, spleen, and pancreas.Main results. The empirical noise model performs well, with an average RMSE approximately 1.5 HU and an average relative RMSE approximately 5% across different dose levels. The segmentation from TotalSegmentator yielded a mean Dice score of 0.8597 across the six organs (max = 0.9315 in liver, min = 0.6855 in pancreas). The resulting error in organ-level dose and noise estimation was less than 2% for most organs.Significance. The proposed pipeline can output individualized organ-specific dose and noise estimates accurately for personalized protocol evaluation and optimization. It is fully automated and can be scalable to large clinical datasets. This pipeline can be used to optimize image quality for specific organs and thus clinical tasks, without adversely affecting overall radiation dose.

Individualized evaluation of the total dose received by radiotherapy patients: Integrating in-field, out-of-field, and imaging doses

PURPOSE

To propose a methodology for integrating the out-of-field and imaging doses to the in-field dose received by radiotherapy (RT) patients. In addition, the impact of considering the total dose in planning and radiation-induced second malignancies (RISM) risk assessment will be evaluated in several scenarios comprising photon and proton treatments.

METHODS

The total dose is the voxel-wise sum of the doses from the different radiation sources (accounting for the radiobiological effectiveness) produced during the whole RT chain. The dose from the plan and imaging procedures were obtained by measurements for a photon prostate treatment and by calculation (combining treatment planning system, analytical models, and Monte Carlo simulations) for two lymphoma treatments, one using photons and the other, protons. Dose distributions, dose volume histograms (DVHs) metrics, mean organ doses, and RISM risks were evaluated for each radiation exposure in each treatment.

RESULTS

In general, the contribution of the imaging doses is low compared to the dose administered during RT treatment, being higher in proton therapy. However, for some organs, for instance testes in the prostate case, the imaging dose becomes higher than the scattered dose from the treatment fields. Plan evaluations revealed shifts in cumulative DVHs with the inclusion of out-of-field and imaging doses, though minimal clinical impact is expected. Risk assessment showed increased estimates with total dose.

CONCLUSIONS

The methodology enables accounting for the total dose for optimization of plans and imaging protocols, prospective risk predictions and retrospective epidemiological analyses.

Descriptive overview of AI applications in x-ray imaging and radiotherapy

Artificial intelligence (AI) is transforming medical radiation applications by handling complex data, learning patterns, and making accurate predictions, leading to improved patient outcomes. This article examines the use of AI in optimising radiation doses for x-ray imaging, improving radiotherapy outcomes, and briefly addresses the benefits, challenges, and limitations of AI integration into clinical workflows. In diagnostic radiology, AI plays a pivotal role in optimising radiation exposure, reducing noise, enhancing image contrast, and lowering radiation doses, especially in high-dose procedures like computed tomography (CT). Deep learning (DL)-powered CT reconstruction methods have already been incorporated into clinical routine. Moreover, AI-powered methodologies have been developed to provide real-time, patient-specific radiation dose estimates. These AI-driven tools have the potential to streamline workflows and potentially become integral parts of imaging practices. In radiotherapy, AI's ability to automate and enhance the precision of treatment planning is emphasised. Traditional methods, such as manual contouring, are time-consuming and prone to variability. AI-driven techniques, particularly DL models, are automating the segmentation of organs and tumours, improving the accuracy of radiation delivery, and minimising damage to healthy tissues. Moreover, AI supports adaptive radiotherapy, allowing continuous optimisation of treatment plans based on changes in a patient's anatomy over time, ensuring the highest accuracy in radiation delivery and better therapeutic outcomes. Some of these methods have been validated and integrated into radiation treatment systems, while others are not yet ready for routine clinical use mainly due to challenges in validation, particularly ensuring reliability across diverse patient populations and clinical settings. Despite the potential of AI, there are challenges in fully integrating these technologies into clinical practice. Issues such as data protection, privacy, data quality, model validation, and the need for large and diverse datasets are crucial to ensuring the reliability of AI systems.

The SINFONIA project repository for AI-based algorithms and health data

The SINFONIA project's main objective is to develop novel methodologies and tools that will provide a comprehensive risk appraisal for detrimental effects of radiation exposure on patients, workers, caretakers, and comforters, the public, and the environment during the management of patients suspected or diagnosed with lymphoma, brain tumors, and breast cancers. The project plan defines a series of key objectives to be achieved on the way to the main objective. One of these objectives is to develop and operate a repository to collect, pool, and share data from imaging and non-imaging examinations and radiation therapy sessions, histological results, and demographic information related to individual patients with lymphoma, brain tumors, and breast cancers. This paper presents the final version of that repository, a cloud-based platform for imaging and non-imaging data. It results from the implementation and integration of several software tools and programming frameworks under an evolutive architecture according to the project partners' needs and the constraints of the General Data Protection Regulation. It provides, among other services, data uploading and downloading, data sharing, file decompression, data searching, DICOM previsualization, and an infrastructure for submitting and running Artificial Intelligence models.

[Artificial intelligence in diagnostic radiology for dose management : Advances and perspectives using the example of computed tomography]

CLINICAL-METHODOLOGICAL PROBLEM

Imaging procedures employing ionizing radiation require compliance with European directives and national regulations in order to protect patients. Each exposure must be indicated, individually adapted, and documented. Unacceptable dose exceedances must be detected and reported. These tasks are time-consuming and require meticulous diligence.

STANDARD RADIOLOGICAL METHODS

Computed tomography (CT) is the most important contributor to medical radiation exposure. Optimizing the patient's dose is therefore mandatory. Use of modern technology and reconstruction algorithms already reduces exposure. Checking the indication, planning, and performing the examination are further important process steps with regard to radiation protection. Patient exposure is usually monitored by dose management systems (DMS). In special cases, a risk assessment is required by calculating the organ doses.

METHODOLOGICAL INNOVATIONS

Artificial intelligence (AI)-assisted techniques are increasingly used in various steps of the process: they support examination planning, improve patient positioning, and enable automated scan length adjustments. They also provide real-time estimates of individual organ doses.

EVALUATION

The integration of AI into medical imaging is proving successful in terms of dose optimization in various areas of the radiological workflow, from reconstruction to examination planning and performing exams. However, the use of AI in conjunction with DMS has not yet been considered on a large scale.

PRACTICAL RECOMMENDATION

AI processes offer promising tools to support dose management. However, their implementation in the clinical setting requires further research, extensive validation, and continuous monitoring.

Fast prediction of personalized abdominal organ doses from CT examinations by radiomics feature-based machine learning models

The X-rays emitted during CT scans can increase solid cancer risks by damaging DNA, with the risk tied to patient-specific organ doses. This study aims to establish a new method to predict patient specific abdominal organ doses from CT examinations using minimized computational resources at a fast speed. The CT data of 247 abdominal patients were selected and exported to the auto-segmentation software named DeepViewer to generate abdominal regions of interest (ROIs). Radiomics feature were extracted based on the selected CT data and ROIs. Reference organ doses were obtained by GPU-based Monte Carlo simulations. The support vector regression (SVR) model was trained based on the radiomics features and reference organ doses to predict abdominal organ doses from CT examinations. The prediction performance of the SVR model was tested and verified by changing the abdominal patients of the train and test sets randomly. For the abdominal organs, the maximal difference between the reference and the predicted dose was less than 1 mGy. For the body and bowel, the organ doses were predicted with a percentage error of less than 5.2%, and the coefficient of determination (R2) reached up to 0.9. For the left kidney, right kidney, liver, and spinal cord, the mean absolute percentage error ranged from 5.1 to 8.9%, and the R2 values were more than 0.74. The SVR model could be trained to achieve accurate prediction of personalized abdominal organ doses in less than one second using a single CPU core.

Fully automated explainable abdominal CT contrast media phase classification using organ segmentation and machine learning

BACKGROUND

Contrast-enhanced computed tomography (CECT) provides much more information compared to non-enhanced CT images, especially for the differentiation of malignancies, such as liver carcinomas. Contrast media injection phase information is usually missing on public datasets and not standardized in the clinic even in the same region and language. This is a barrier to effective use of available CECT images in clinical research.

PURPOSE

The aim of this study is to detect contrast media injection phase from CT images by means of organ segmentation and machine learning algorithms.

METHODS

A total number of 2509 CT images split into four subsets of non-contrast (class #0), arterial (class #1), venous (class #2), and delayed (class #3) after contrast media injection were collected from two CT scanners. Seven organs including the liver, spleen, heart, kidneys, lungs, urinary bladder, and aorta along with body contour masks were generated by pre-trained deep learning algorithms. Subsequently, five first-order statistical features including average, standard deviation, 10, 50, and 90 percentiles extracted from the above-mentioned masks were fed to machine learning models after feature selection and reduction to classify the CT images in one of four above mentioned classes. A 10-fold data split strategy was followed. The performance of our methodology was evaluated in terms of classification accuracy metrics.

RESULTS

The best performance was achieved by Boruta feature selection and RF model with average area under the curve of more than 0.999 and accuracy of 0.9936 averaged over four classes and 10 folds. Boruta feature selection selected all predictor features. The lowest classification was observed for class #2 (0.9888), which is already an excellent result. In the 10-fold strategy, only 33 cases from 2509 cases (∼1.4%) were misclassified. The performance over all folds was consistent.

CONCLUSIONS

We developed a fast, accurate, reliable, and explainable methodology to classify contrast media phases which may be useful in data curation and annotation in big online datasets or local datasets with non-standard or no series description. Our model containing two steps of deep learning and machine learning may help to exploit available datasets more effectively.

Is deep learning-enabled real-time personalized CT dosimetry feasible using only patient images as input?

PURPOSE

To propose a novel deep-learning based dosimetry method that allows quick and accurate estimation of organ doses for individual patients, using only their computed tomography (CT) images as input.

METHODS

Despite recent advances in medical dosimetry, personalized CT dosimetry remains a labour-intensive process. Current state-of-the-art methods utilize time-consuming Monte Carlo (MC) based simulations for individual organ dose estimation in CT. The proposed method uses conditional generative adversarial networks (cGANs) to substitute MC simulations with fast dose image generation, based on image-to-image translation. The pix2pix architecture in conjunction with a regression model was utilized for the generation of the synthetic dose images. The lungs, heart, breast, bone and skin were manually segmented to estimate and compare organ doses calculated using both the original and synthetic dose images, respectively.

RESULTS

The average organ dose estimation error for the proposed method was 8.3% and did not exceed 20% for any of the organs considered. The performance of the method in the clinical environment was also assessed. Using segmentation tools developed in-house, an automatic organ dose calculation pipeline was set up. Calculation of organ doses for heart and lung for each CT slice took about 2 s.

CONCLUSIONS

This work shows that deep learning-enabled personalized CT dosimetry is feasible in real-time, using only patient CT images as input.

Image detection of aortic dissection complications based on multi-scale feature fusion

Background

Aortic dissection refers to the true and false two-lumen separation of the aortic wall, in which the blood in the aortic lumen enters the aortic mesomembrane from the tear of the aortic intima to separate the mesomembrane and expand along the long axis of the aorta.

Purpose

In view of the problems of individual differences, complex complications and many small targets in clinical aortic dissection detection, this paper proposes a convolution neural network MFF-FPN (Multi-scale Feature Fusion based Feature Pyramid Network) for the detection of aortic dissection complications.

Methods

The proposed model uses Resnet50 as the backbone for feature extraction and builds a pyramid structure to fuse low-level and high-level feature information. We add an attention mechanism to the backbone network, which can establish inter-dependencies between feature graph channels and enhance the representation quality of CNN.

Results

The proposed method has a mean average precision (MAP) of 99.40% in the task of multi object detection for aortic dissection and complications, which is higher than the accuracy of 96.3% on SSD model and 99.05% on YoloV7 model. It greatly improves the accuracy of small target detection such as cysts, making it more suitable for clinical focus detection.

Conclusions

The proposed deep learning model achieves feature reuse and focuses on local important information. By adding only a small number of model parameters, we are able to greatly improve the detection accuracy, which is effective in detecting small target lesions commonly found in clinical settings, and also performs well on other medical and natural datasets.

Fast prediction of patient-specific organ doses in brain CT scans using support vector regression algorithm

Objectives. This study aims to develop a method for predicting patient-specific head organ doses by training a support vector regression (SVR) model based on radiomics features and graphics processing unit (GPU)-calculated reference doses.Methods. In this study, 237 patients who underwent brain CT scans were selected, and their CT data were transferred to an autosegmentation software to segment head regions of interest (ROIs). Subsequently, radiomics features were extracted from the CT data and ROIs, and the benchmark organ doses were computed using fast GPU-accelerated Monte Carlo (MC) simulations. The SVR organ dose prediction model was then trained using the radiomics features and benchmark doses. For the predicted organ doses, the relative root mean squared error (RRMSE), mean absolute percentage error (MAPE), and coefficient of determination (R2) were evaluated. The robustness of organ dose prediction was verified by changing the patient samples on the training and test sets randomly.Results. For all head organs, the maximal difference between the reference and predicted dose was less than 1 mGy. For the brain, the organ dose was predicted with an absolute error of 1.3%, and theR2reached up to 0.88. For the eyes and lens, the organ doses predicted by SVR achieved an RRMSE of less than 13%, the MAPE ranged from 4.5% to 5.5%, and theR2values were more than 0.7.Conclusions. Patient-specific head organ doses from CT examinations can be predicted within one second with high accuracy, speed, and robustness by training an SVR using radiomics features.

Predicting patient-specific organ doses from thoracic CT examinations using support vector regression algorithm

PURPOSE

This study aims to propose and develop a fast, accurate, and robust prediction method of patient-specific organ doses from CT examinations using minimized computational resources.

MATERIALS AND METHODS

We randomly selected the image data of 723 patients who underwent thoracic CT examinations. We performed auto-segmentation based on the selected data to generate the regions of interest (ROIs) of thoracic organs using the DeepViewer software. For each patient, radiomics features of the thoracic ROIs were extracted via the Pyradiomics package. The support vector regression (SVR) model was trained based on the radiomics features and reference organ dose obtained by Monte Carlo (MC) simulation. The root mean squared error (RMSE), mean absolute percentage error (MAPE), and coefficient of determination (R-squared) were evaluated. The robustness was verified by randomly assigning patients to the train and test sets of data and comparing regression metrics of different patient assignments.

RESULTS

For the right lung, left lung, lungs, esophagus, heart, and trachea, results showed that the trained SVR model achieved the RMSEs of 2 mGy to 2.8 mGy on the test sets, 1.5 mGy to 2.5 mGy on the train sets. The calculated MAPE ranged from 0.1 to 0.18 on the test sets, and 0.08 to 0.15 on the train sets. The calculated R-squared was 0.75 to 0.89 on test sets.

CONCLUSIONS

By combined utilization of the SVR algorithm and thoracic radiomics features, patient-specific thoracic organ doses could be predicted accurately, fast, and robustly in one second even using one single CPU core.