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Agnès SA, Okpekon T, Kouadio YA, Jagora A, Bréard D, Costa EV, da Silva FMA, Koolen HHF, Le Ray-Richomme AM, Richomme P, Champy P, Beniddir MA, Le Pogam P. Implementation of a MS/MS database for isoquinoline alkaloids and other annonaceous metabolites. Sci Data 2022; 9:270. [PMID: 35668110 PMCID: PMC9170680 DOI: 10.1038/s41597-022-01345-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 05/04/2022] [Indexed: 12/22/2022] Open
Abstract
This data descriptor reports on the upload to a public repository (GNPS) of the IQAMDB, IsoQuinoline and Annonaceous Metabolites Data Base, comprising 320 tandem mass spectra. This project originated from our in-house collection of isoquinolines. The diversity of compounds included in this database was further extended through the contribution of two additional laboratories involved in isoquinoline alkaloids research: University of Angers and University of Manaus. The generated MS/MS data were processed and annotated on an individual basis to promote their straightforward reuse by natural product chemists interested in either the description of new isoquinoline alkaloids or the dereplication of isoquinoline-containing samples. The interest of the current repertoire for dereplication purposes has been validated based on the molecular networking of the well-investigated plant model Annona montana against the IQAMDB‐implemented GNPS. | Measurement(s) | electrospray ionization | | Technology Type(s) | Ultra High-performance Liquid Chromatography • Tandem Mass Spectrometry |
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Affiliation(s)
- Salemon Akpa Agnès
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France.,Laboratoire de Constitution et Réaction de la Matière (LCRM), UFR Sciences des Structures de la Matière et Technologie, Université Félix Houphouët-Boigny, BP 582, Abidjan 22, Côte d'Ivoire
| | - Timothée Okpekon
- Laboratoire de Constitution et Réaction de la Matière (LCRM), UFR Sciences des Structures de la Matière et Technologie, Université Félix Houphouët-Boigny, BP 582, Abidjan 22, Côte d'Ivoire
| | - Yvette Affoué Kouadio
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France.,Laboratoire de Constitution et Réaction de la Matière (LCRM), UFR Sciences des Structures de la Matière et Technologie, Université Félix Houphouët-Boigny, BP 582, Abidjan 22, Côte d'Ivoire
| | - Adrien Jagora
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France
| | | | - Emmanoel V Costa
- Departamento de Química, Universidade Federal do Amazonas, Av. Rodrigo Otávio 1200, 69067-005, Manaus, AM, Brazil
| | - Felipe M A da Silva
- Centro de Apoio Multidisciplinar (CAM), Universidade Federal do Amazonas, Av. Rodrigo Otávio 1200, 69067-005, Manaus, Brazil
| | - Hector H F Koolen
- Grupo de Pesquisa em Metabolômica e Espectrometria de Massas, Universidade do Estado do Amazonas, Av. Carvalho Leal 1777, 69065-001, Manaus, Brazil
| | | | | | - Pierre Champy
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France
| | - Mehdi A Beniddir
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France
| | - Pierre Le Pogam
- Équipe "Chimie des Substances Naturelles" Université Paris-Saclay, CNRS, BioCIS, 5 rue J.-B. Clément, 92290, Châtenay-Malabry, France.
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2
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Li SG, Wang YT, Zhang Q, Wang KB, Xue JJ, Li DH, Jing YK, Lin B, Hua HM. Pegaharmols A–B, Axially Chiral β-Carboline-quinazoline Dimers from the Roots of Peganum harmala. Org Lett 2020; 22:7522-7525. [DOI: 10.1021/acs.orglett.0c02709] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Sheng-Ge Li
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Yue-Tong Wang
- Wuya College of Innovation, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Qin Zhang
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Kai-Bo Wang
- Department of Medicinal Chemistry and Molecular Pharmacology, College of Pharmacy, Purdue University, West Lafayette, Indiana 47907, United States
| | - Jing-Jing Xue
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Da-Hong Li
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Yong-Kui Jing
- Wuya College of Innovation, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
| | - Bin Lin
- School of Pharmaceutical Engineering, Shenyang Pharmaceutical University, Shenyang 110016, Liaoning Province, People’s Republic of China
| | - Hui-Ming Hua
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, P. R. China
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Costa RA, Junior ESA, Lopes GBP, Pinheiro MLB, Costa EV, Bezerra DP, Oliveira K. Structural, vibrational, UV–vis, quantum-chemical properties, molecular docking and anti-cancer activity study of annomontine and N-hydroxyannomontine β-carboline alkaloids: A combined experimental and DFT approach. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.06.054] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Amaral ACF, Ramos ADS, Ferreira JLP, Santos ARD, Cruz JDD, Luna AVMD, Nery VVC, Lima ICD, Chaves MHDC, Silva JRDA. LC‐HRMS for the Identification of β‐Carboline and Canthinone Alkaloids Isolated from Natural Sources. Mass Spectrom (Tokyo) 2017. [DOI: 10.5772/68075] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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Costa EV, Pinheiro MLB, de Souza ADL, Barison A, Campos FR, Valdez RH, Ueda-Nakamura T, Filho BPD, Nakamura CV. Trypanocidal activity of oxoaporphine and pyrimidine-β-carboline alkaloids from the branches of Annona foetida Mart. (Annonaceae). Molecules 2011; 16:9714-20. [PMID: 22113579 PMCID: PMC6264547 DOI: 10.3390/molecules16119714] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2011] [Revised: 11/17/2011] [Accepted: 11/17/2011] [Indexed: 11/16/2022] Open
Abstract
Phytochemical investigation of the branches of Annona foetida Mart. led to isolation from the CH2Cl2 extract of four alkaloids: Atherospermidine (1), described for the first time in this species, liriodenine (2), O-methylmoschatoline (3), and annomontine (4). Their chemical structures were established on the basis of spectroscopic data from IR, MS, NMR (1D and 2D), and comparison with the literature. Compounds 2–4 showed potent trypanocidal effect when evaluated against epimastigote and trypomastigote forms of Trypanosoma cruzi.
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Affiliation(s)
- Emmanoel Vilaça Costa
- LABORGANICS, Department of Chemistry, Federal University of Sergipe, 49100-000, São Cristóvão, SE, Brazil; (E.V.C.)
| | - Maria Lúcia Belém Pinheiro
- Department of Chemistry, Federal University of Amazonas, 69077-000, Manaus, AM, Brazil
- Author to whom correspondence should be addressed; ; Tel./Fax: +55-92-3305-4031
| | | | - Andersson Barison
- Department of Chemistry, Federal University of Paraná, 81531-990, Curitiba, PR, Brazil; (A.B.)
| | - Francinete Ramos Campos
- Department of Pharmacy, Federal University of Paraná, 80210-170, Curitiba, PR, Brazil; (F.R.C.)
| | - Rodrigo Hinojosa Valdez
- Department of Basic Health Sciences, State University of Maringá, 87020-900, Maringá, PR, Brazil; (R.H.V.); (T.U.-N.); (B.P.D.F.); (C.V.N.)
| | - Tânia Ueda-Nakamura
- Department of Basic Health Sciences, State University of Maringá, 87020-900, Maringá, PR, Brazil; (R.H.V.); (T.U.-N.); (B.P.D.F.); (C.V.N.)
| | - Benedito Prado Dias Filho
- Department of Basic Health Sciences, State University of Maringá, 87020-900, Maringá, PR, Brazil; (R.H.V.); (T.U.-N.); (B.P.D.F.); (C.V.N.)
| | - Celso Vataru Nakamura
- Department of Basic Health Sciences, State University of Maringá, 87020-900, Maringá, PR, Brazil; (R.H.V.); (T.U.-N.); (B.P.D.F.); (C.V.N.)
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Chan STS, Pearce AN, Page MJ, Kaiser M, Copp BR. Antimalarial β-carbolines from the New Zealand ascidian Pseudodistoma opacum. JOURNAL OF NATURAL PRODUCTS 2011; 74:1972-1979. [PMID: 21846091 DOI: 10.1021/np200509g] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
One tetrahydro-β-carboline, (-)-7-bromohomotrypargine (1), and three alkylguanidine-substituted β-carbolines, opacalines A, B, and C (2-4), have been isolated from the New Zealand ascidian Pseudodistoma opacum. The structures of the metabolites were determined by analysis of mass spectrometric and 2D NMR spectroscopic data. Natural products 2 and 3, synthetic debromo analogues 8 and 9, and intermediate 16 exhibited moderate antimalarial activity toward a chloroquine-resistant strain of Plasmodium falciparum, with an IC50 range of 2.5-14 μM. The biosynthesis of 1-4 is proposed to proceed via a Pictet-Spengler condensation of 6-bromotryptamine and the α-keto acid transamination product of either arginine or homoarginine. Cell separation and 1H NMR analysis of P. opacum identified tetrahydro-β-carboline 1 to be principally located in the zooids, while fully aromatized analogues 2-4 were localized to the test.
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Affiliation(s)
- Susanna T S Chan
- School of Chemical Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand
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