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Dias-Silva JR, Oliveira VM, Sanches-Neto FO, Wilhelms RZ, Queiroz Júnior LHK. SpectraFP: a new spectra-based descriptor to aid in cheminformatics, molecular characterization and search algorithm applications. Phys Chem Chem Phys 2023. [PMID: 37378661 DOI: 10.1039/d3cp00734k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2023]
Abstract
We have developed an algorithm to generate a new spectra-based descriptor, called SpectraFP, in order to digitalize the chemical shifts of 13C NMR spectra, as well as potentially important data from other spectroscopic techniques. This descriptor is a fingerprint vector with defined sizes and values of 0 and 1, with the ability to correct chemical shift fluctuations. To explore the applicability of SpectraFP, we outlined two application scenarios: (1) the prediction of six functional groups by machine learning (ML) models and (2) the search for structures based on the similarity between the query spectrum and spectra in an experimental database, both in the SpectraFP format. For each functional group, five ML models were built and validated following the OECD principles: internal and external validations, applicability domains, and mechanistic interpretations. All the models resulted in high goodness-of-fit for the training and test sets with MCC respectively between 0.626 and 0.909 and 0.653 and 0.917, and J ranging from 0.812 to 0.957 and 0.825 to 0.961. Using the SHAP (SHapley Additive exPlanations) approach, the mechanistic interpretations of the models were explored; the results indicated that the most important variables for model decision making were coherent with the expected chemical shifts for each functional group. Several metrics, including Tanimoto, geometric, arithmetic, and Tversky, can be used to perform the similarity calculation for the search algorithm. This algorithm can also incorporate additional variables, such as the correction parameter and the difference between the amount of signals in the query spectrum and the database spectra, while preserving its high performance speed. We hope that our descriptor can link information from spectroscopic/spectrometric techniques with ML models to expand the possibilities in understanding the field of cheminformatics. All databases and algorithms developed for this work are open sources and freely accessible.
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Affiliation(s)
| | - Vitor M Oliveira
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Brazil.
| | - Flávio O Sanches-Neto
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Brazil.
- Instituto Federal de Educação, Ciência e Tecnologia de Goiás, Valparaíso de Goiás, Goiania, GO, CEP: 72876-601, Brazil
| | - Renan Z Wilhelms
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Brazil.
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2
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Kristinaityte K, Mames A, Pietrzak M, Westermair FF, Silva W, Gschwind RM, Ratajczyk T, Urbańczyk M. Deeper Insight into Photopolymerization: The Synergy of Time-Resolved Nonuniform Sampling and Diffusion NMR. J Am Chem Soc 2022; 144:13938-13945. [PMID: 35852987 PMCID: PMC9354252 DOI: 10.1021/jacs.2c05944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
The comprehensive real-time in situ monitoring of chemical
processes
is a crucial requirement for the in-depth understanding of these processes.
This monitoring facilitates an efficient design of chemicals and materials
with the precise properties that are desired. This work presents the
simultaneous utilization and synergy of two novel time-resolved NMR
methods, i.e., time-resolved diffusion NMR and time-resolved nonuniform
sampling. The first method allows the average diffusion coefficient
of the products to be followed, while the second method enables the
particular products to be monitored. Additionally, the average mass
of the system is calculated with excellent resolution using both techniques.
Employing both methods at the same time and comparing their results
leads to the unequivocal validation of the assignment in the second
method. Importantly, such validation is possible only via the simultaneous
combination of both approaches. While the presented methodology was
utilized for photopolymerization, it can also be employed for any
other polymerization process, complexation, or, in general, chemical
reactions in which the evolution of mass in time is of importance.
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Affiliation(s)
- Kristina Kristinaityte
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Adam Mames
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Mariusz Pietrzak
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Franz F. Westermair
- Faculty of Chemistry and Pharmacy, Univeristy of Regensburg, Universitätsstraßze 31, 93053 Regensburg, Germany
| | - Wagner Silva
- Faculty of Chemistry and Pharmacy, Univeristy of Regensburg, Universitätsstraßze 31, 93053 Regensburg, Germany
| | - Ruth M. Gschwind
- Faculty of Chemistry and Pharmacy, Univeristy of Regensburg, Universitätsstraßze 31, 93053 Regensburg, Germany
| | - Tomasz Ratajczyk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Mateusz Urbańczyk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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3
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Lhoste C, Lorandel B, Praud C, Marchand A, Mishra R, Dey A, Bernard A, Dumez JN, Giraudeau P. Ultrafast 2D NMR for the analysis of complex mixtures. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 130-131:1-46. [PMID: 36113916 DOI: 10.1016/j.pnmrs.2022.01.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 01/21/2022] [Accepted: 01/23/2022] [Indexed: 06/15/2023]
Abstract
2D NMR is extensively used in many different fields, and its potential for the study of complex biochemical or chemical mixtures has been widely demonstrated. 2D NMR gives the ability to resolve peaks that overlap in 1D spectra, while providing both structural and quantitative information. However, complex mixtures are often analysed in situations where the data acquisition time is a crucial limitation, due to an ongoing chemical reaction or a moving sample from a hyphenated technique, or to the high-throughput requirement associated with large sample collections. Among the great diversity of available fast 2D methods, ultrafast (or single-scan) 2D NMR is probably the most general and versatile approach for complex mixture analysis. Indeed, ultrafast NMR has undergone an impressive number of methodological developments that have helped turn it into an efficient analytical tool, and numerous applications to the analysis of mixtures have been reported. This review first summarizes the main concepts, features and practical limitations of ultrafast 2D NMR, as well as the methodological developments that improved its analytical potential. Then, a detailed description of the main applications of ultrafast 2D NMR to mixture analysis is given. The two major application fields of ultrafast 2D NMR are first covered, i.e., reaction/process monitoring and metabolomics. Then, the potential of ultrafast 2D NMR for the analysis of hyperpolarized mixtures is described, as well as recent developments in oriented media. This review focuses on high-resolution liquid-state 2D experiments (including benchtop NMR) that include at least one spectroscopic dimension (i.e., 2D spectroscopy and DOSY) but does not cover in depth applications without spectral resolution and/or in inhomogeneous fields.
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Affiliation(s)
- Célia Lhoste
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | | | - Clément Praud
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Achille Marchand
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Rituraj Mishra
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Arnab Dey
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Aurélie Bernard
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
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4
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Ben-Tal Y, Boaler PJ, Dale HJA, Dooley RE, Fohn NA, Gao Y, García-Domínguez A, Grant KM, Hall AMR, Hayes HLD, Kucharski MM, Wei R, Lloyd-Jones GC. Mechanistic analysis by NMR spectroscopy: A users guide. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 129:28-106. [PMID: 35292133 DOI: 10.1016/j.pnmrs.2022.01.001] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 01/05/2022] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
A 'principles and practice' tutorial-style review of the application of solution-phase NMR in the analysis of the mechanisms of homogeneous organic and organometallic reactions and processes. This review of 345 references summarises why solution-phase NMR spectroscopy is uniquely effective in such studies, allowing non-destructive, quantitative analysis of a wide range of nuclei common to organic and organometallic reactions, providing exquisite structural detail, and using instrumentation that is routinely available in most chemistry research facilities. The review is in two parts. The first comprises an introduction to general techniques and equipment, and guidelines for their selection and application. Topics include practical aspects of the reaction itself, reaction monitoring techniques, NMR data acquisition and processing, analysis of temporal concentration data, NMR titrations, DOSY, and the use of isotopes. The second part comprises a series of 15 Case Studies, each selected to illustrate specific techniques and approaches discussed in the first part, including in situ NMR (1/2H, 10/11B, 13C, 15N, 19F, 29Si, 31P), kinetic and equilibrium isotope effects, isotope entrainment, isotope shifts, isotopes at natural abundance, scalar coupling, kinetic analysis (VTNA, RPKA, simulation, steady-state), stopped-flow NMR, flow NMR, rapid injection NMR, pure shift NMR, dynamic nuclear polarisation, 1H/19F DOSY NMR, and in situ illumination NMR.
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Affiliation(s)
- Yael Ben-Tal
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Patrick J Boaler
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Harvey J A Dale
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Ruth E Dooley
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom; Evotec (UK) Ltd, 114 Innovation Drive, Milton Park, Abingdon, Oxfordshire OX14 4RZ, United Kingdom
| | - Nicole A Fohn
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Yuan Gao
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Andrés García-Domínguez
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Katie M Grant
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Andrew M R Hall
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Hannah L D Hayes
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Maciej M Kucharski
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Ran Wei
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom
| | - Guy C Lloyd-Jones
- School of Chemistry, Joseph Black Building, David Brewster Road, Edinburgh, EH9 3FJ, United Kingdom.
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5
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Kupče Ē, Frydman L, Webb AG, Yong JRJ, Claridge TDW. Parallel nuclear magnetic resonance spectroscopy. ACTA ACUST UNITED AC 2021. [DOI: 10.1038/s43586-021-00024-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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6
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Gouilleux B, Farjon J, Giraudeau P. Gradient-based pulse sequences for benchtop NMR spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2020; 319:106810. [PMID: 33036709 DOI: 10.1016/j.jmr.2020.106810] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 08/12/2020] [Accepted: 08/13/2020] [Indexed: 06/11/2023]
Abstract
Benchtop NMR spectroscopy has been on the rise for the last decade, by bringing high-resolution NMR in environments that are not easily compatible with high-field NMR. Benchtop spectrometers are accessible, low cost and show an impressive performance in terms of sensitivity with respect to the relatively low associated magnetic field (40-100 MHz). However, their application is limited by the strong and ubiquitous peak overlaps arising from the complex mixtures which are often targeted, often characterized by a great diversity of concentrations and by strong signals from non-deuterated solvents. Such limitations can be addressed by pulse sequences making clever use of magnetic field gradient pulses, capable of performing efficient coherence selection or encoding chemical shift or diffusion information. Gradients pulses are well-known ingredients of high-field pulse sequence recipes, but were only recently made available on benchtop spectrometers, thanks to the introduction of gradient coils in 2015. This article reviews the recent methodological advances making use of gradient pulses on benchtop spectrometers and the applications stemming from these developments. Particular focus is made on solvent suppression schemes, diffusion-encoded, and spatially-encoded experiments, while discussing both methodological advances and subsequent applications. We eventually discuss the exciting development and application perspectives that result from such advances.
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Affiliation(s)
- Boris Gouilleux
- Université Paris-Saclay, ICMMO, UMR CNRS 8182, RMN en Milieu Orienté, France
| | - Jonathan Farjon
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Patrick Giraudeau
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France.
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7
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Kjeldsen C, Ardenkjær-Larsen JH, Duus JØ. Unexpected Anomeric Acceptor Preference Observed Using dDNP NMR for Transglycosylation Studies of β-Galactosidases. Biochemistry 2020; 59:2903-2908. [DOI: 10.1021/acs.biochem.0c00390] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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8
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Jacquemmoz C, Giraud F, Dumez JN. Online reaction monitoring by single-scan 2D NMR under flow conditions. Analyst 2020; 145:478-485. [DOI: 10.1039/c9an01758e] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Single-scan 2D NMR based on spatial encoding can be used to monitor chemical reactions with a flow unit in realistic reaction conditions.
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Affiliation(s)
| | - François Giraud
- ICSN
- CNRS UPR2301
- Univ. Paris Sud
- Université Paris-Saclay
- 91190 Gif sur Yvette
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9
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Wang K, Zhang Z, Chen H, Cai S, Chen Z. High-resolution heteronuclear correlation spectroscopy based on spatial encoding and coherence transfer in inhomogeneous fields. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1022610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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10
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Herrera A, Fernández-Valle E, Martínez-Álvarez R, Molero-Vílchez D, Pardo-Botero ZD, Sáez-Barajas E. Monitoring organic reactions by UF-NMR spectroscopy. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:952-970. [PMID: 25998506 DOI: 10.1002/mrc.4240] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Revised: 02/26/2015] [Accepted: 03/03/2015] [Indexed: 06/04/2023]
Abstract
Standard 2D NMR experiments suffer from the many t1 increments needed for spectra with sufficient digital resolution in the indirect dimension. Despite the different methodological approaches to overcome this problem, these increments have prevented studies of fast reactions. The development of ultrafast NMR (UF-NMR) has decisively speeded up the time scale of standard NMR to allow the study of organic reactions as they happen in real time to reveal mechanistic details. This mini-review summarizes the results achieved in monitoring organic reactions through this exciting technique.
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Affiliation(s)
- Antonio Herrera
- CAI-RMN, Universidad Complutense de Madrid, Madrid, Spain
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Roberto Martínez-Álvarez
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Zulay D Pardo-Botero
- CAI-RMN, Universidad Complutense de Madrid, Madrid, Spain
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
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11
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Akoka S, Giraudeau P. Fast hybrid multi-dimensional NMR methods based on ultrafast 2D NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:986-94. [PMID: 25825866 DOI: 10.1002/mrc.4237] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Revised: 02/24/2015] [Accepted: 02/25/2015] [Indexed: 05/13/2023]
Abstract
Conventional multi-dimensional (nD) NMR experiments are characterized by inherent long acquisition durations, while ultrafast (UF) NMR makes it possible to reduce to a few hundreds of milliseconds the overall acquisition duration of a complete nD NMR dataset. Although extremely promising for a number of specific applications, the UF strategy suffers from significant limitations compared with its conventional counterpart. The main limitations concern the sensitivity, the resolution, and the accessible spectral width. However, when the targeted applications are compatible with an acquisition duration between a few seconds and a few minutes, hybrid UF techniques can be used to improve the performance of UF nD NMR while remaining faster than conventional acquisitions. Much better results in terms of signal-to-noise ratio can be achieved with the multi-scan single-shot approach or with interleaved acquisitions. Even more, for the same experimental duration, and in the case of homonuclear 2D NMR, the multi-scan single-shot approach has a much higher precision than conventional 2D NMR. Interleaved 2D NMR overcomes the drawbacks of single-scan UF NMR in terms of spectral width and provides spectra for which the quality is not significantly different from that obtained with conventional 2D NMR. Finally, high spectral qualities have been demonstrated from hybrid conventional/UF 3D approaches capable of recording a whole 3D spectrum in the time needed to record a conventional 2D spectrum. This mini-review aims at describing the principles, the recent advances and the latest applications of these hybrid techniques. Copyright © 2015 John Wiley & Sons, Ltd.
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Affiliation(s)
- Serge Akoka
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), CNRS, UMR 6230, Université de Nantes, LUNAM Université
| | - Patrick Giraudeau
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), CNRS, UMR 6230, Université de Nantes, LUNAM Université
- Institut Universitaire de France, 1 rue Descartes, 75005, Paris Cedex 5, France
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12
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Gal M, Frydman L. Multidimensional NMR spectroscopy in a single scan. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:971-985. [PMID: 26249041 DOI: 10.1002/mrc.4271] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 05/04/2015] [Accepted: 05/05/2015] [Indexed: 06/04/2023]
Abstract
Multidimensional NMR has become one of the most widespread spectroscopic tools available to study diverse structural and functional aspects of organic and biomolecules. A main feature of multidimensional NMR is the relatively long acquisition times that these experiments demand. For decades, scientists have been working on a variety of alternatives that would enable NMR to overcome this limitation, and deliver its data in shorter acquisition times. Counting among these methodologies is the so-called ultrafast (UF) NMR approach, which in principle allows one to collect arbitrary multidimensional correlations in a single sub-second transient. By contrast to conventional acquisitions, a main feature of UF NMR is a spatiotemporal manipulation of the spins that imprints the chemical shift and/or J-coupling evolutions being sought, into a spatial pattern. Subsequent gradient-based manipulations enable the reading out of this information and its multidimensional correlation into patterns that are identical to those afforded by conventional techniques. The current review focuses on the fundamental principles of this spatiotemporal UF NMR manipulation, and on a few of the methodological extensions that this form of spectroscopy has undergone during the years.
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Affiliation(s)
- Maayan Gal
- Migal Galilee Institute of Research Ltd, 11016, Kiryat Shmona, Israel
| | - Lucio Frydman
- Chemical Physics Department, Weizmann Institute of Science, 76100, Rehovot, Israel
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13
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14
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Gouilleux B, Charrier B, Danieli E, Dumez JN, Akoka S, Felpin FX, Rodriguez-Zubiri M, Giraudeau P. Real-time reaction monitoring by ultrafast 2D NMR on a benchtop spectrometer. Analyst 2015; 140:7854-8. [DOI: 10.1039/c5an01998b] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ultrafast 2D NMR spectra are recorded on a compact spectrometer to follow in real time a reaction in the synthetic chemistry laboratory. Complex reactions can be monitored in non-deuterated solvents to confirm in real time the molecular structure of the compounds involved in the reaction while giving access to relevant kinetic parameters.
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Affiliation(s)
| | | | - Ernesto Danieli
- Institut für Technische und Makromolekulare Chemie (ITMC)
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Jean-Nicolas Dumez
- CNRS UPR2301
- Institut de Chimie des Substances Naturelles
- 91198 Gif-sur-Yvette Cedex
- France
| | - Serge Akoka
- CEISAM CNRS
- UMR6230
- Université de Nantes
- 44322 Nantes
- France
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15
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Fernández-Valle ME, Martínez-Álvarez R, Molero-Vílchez D, Pardo ZD, Sáez-Barajas E, Herrera A. 2D Ultrafast HMBC 1H,31P: Obtaining Mechanistic Details on the Michaelis–Arbuzov Reaction. J Org Chem 2014; 80:799-805. [DOI: 10.1021/jo502253p] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
| | - Roberto Martínez-Álvarez
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | | | - Zulay D. Pardo
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Elena Sáez-Barajas
- CAI
de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Antonio Herrera
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
- CAI
de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
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16
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Boisseau R, Bussy U, Giraudeau P, Boujtita M. In situ ultrafast 2D NMR spectroelectrochemistry for real-time monitoring of redox reactions. Anal Chem 2014; 87:372-5. [PMID: 25506791 DOI: 10.1021/ac5041956] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The in situ implementation of an electrochemical cell (EC) inside a nuclear magnetic resonance (NMR) spectrometer is extremely powerful to study redox reactions in real time and identify unstable reaction intermediates. Unfortunately, the implementation of an electrochemical device near the sensitive volume of an NMR probe significantly affects the quality of the NMR signal, inducing significant line broadening resulting in peak overlap and partial loss of the multiplet structures. Two-dimensional (2D) NMR spectroscopy allows one to bypass signal overlapping by spreading the peaks along two orthogonal dimensions, while providing precious information in terms of structural elucidation. Nevertheless, the acquisition of 2D NMR data suffers from long acquisition durations which are incompatible with fast redox processes taking place in solution. Here, we present a new approach to deal with this issue, consisting of coupling EC-NMR with ultrafast 2D spectroscopy, capable of recording 2D spectra much faster than conventional 2D NMR. This approach is applied to the real-time monitoring of a model reaction. Fast correlation spectroscopy (COSY) spectra are recorded every 3 min in the course of the 80 min reaction, leading to the unambiguous identification of one reaction intermediate and two reaction products. The evolution of 2D NMR peak volumes in the course of time provides further insight into the mechanism of this reaction involving an unstable intermediate. This study demonstrates the feasibility and the relevance of coupling in situ spectroelectrochemistry with ultrafast 2D spectroscopy to monitor real-time electrochemical reactions in the NMR tube.
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Affiliation(s)
- Renaud Boisseau
- Université de Nantes , CNRS, CEISAM UMR 6230, B.P. 92208, 2 rue de la Houssinière, 44322 Nantes Cedex 03, France
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17
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Cai HH, Chen H, Lin YL, Feng JH, Cui XH, Chen Z. Feasibility of Ultrafast Intermolecular Single-Quantum Coherence Spectroscopy in Analysis of Viscous-Liquid Foods. FOOD ANAL METHOD 2014. [DOI: 10.1007/s12161-014-0046-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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18
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Fernández I, Fernández-Valle ME, Martínez-Álvarez R, Molero-Vílchez D, Pardo ZD, Sáez-Barajas E, Sánchez Á, Herrera A. Discovering Mechanistic Insights by Application of Tandem Ultrafast Multidimensional NMR Techniques. J Org Chem 2014; 79:8086-93. [DOI: 10.1021/jo5012834] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Israel Fernández
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | | | - Roberto Martínez-Álvarez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Dolores Molero-Vílchez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Zulay D. Pardo
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Elena Sáez-Barajas
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Ángel Sánchez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Antonio Herrera
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
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Giraudeau P. Quantitative 2D liquid-state NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2014; 52:259-272. [PMID: 24700689 DOI: 10.1002/mrc.4068] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Revised: 03/07/2014] [Accepted: 03/07/2014] [Indexed: 06/03/2023]
Abstract
Two-dimensional (2D) liquid-state NMR has a very high potential to simultaneously determine the absolute concentration of small molecules in complex mixtures, thanks to its capacity to separate overlapping resonances. However, it suffers from two main drawbacks that probably explain its relatively late development. First, the 2D NMR signal is strongly molecule-dependent and site-dependent; second, the long duration of 2D NMR experiments prevents its general use for high-throughput quantitative applications and affects its quantitative performance. Fortunately, the last 10 years has witnessed an increasing number of contributions where quantitative approaches based on 2D NMR were developed and applied to solve real analytical issues. This review aims at presenting these recent efforts to reach a high trueness and precision in quantitative measurements by 2D NMR. After highlighting the interest of 2D NMR for quantitative analysis, the different strategies to determine the absolute concentrations from 2D NMR spectra are described and illustrated by recent applications. The last part of the manuscript concerns the recent development of fast quantitative 2D NMR approaches, aiming at reducing the experiment duration while preserving - or even increasing - the analytical performance. We hope that this comprehensive review will help readers to apprehend the current landscape of quantitative 2D NMR, as well as the perspectives that may arise from it.
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Affiliation(s)
- Patrick Giraudeau
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes, CNRS, UMR 6230, LUNAM Université, 2 rue de la Houssinière, B.P. 92208, 44322, Nantes Cedex 03, France
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20
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Rouger L, Charrier B, Pathan M, Akoka S, Giraudeau P. Processing strategies to obtain clean interleaved ultrafast 2D NMR spectra. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 238:87-93. [PMID: 24322368 DOI: 10.1016/j.jmr.2013.11.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 11/07/2013] [Accepted: 11/13/2013] [Indexed: 06/03/2023]
Abstract
Ultrafast (UF) 2D NMR enables the acquisition of 2D spectra in a single-scan. In spite of its promising potential, the accessible spectral width is highly limited by the maximum gradient amplitude, which limits the general applicability of the method. A number of solutions have been recently described to deal with this limitation, among which stands the possibility to record several interleaved scans. However, this alternative acquisition scheme leads to numerous ghost peaks characteristic of interleaved acquisitions. These artefacts highly affect the readability of 2D spectra for structural elucidation, as well as their quantitative performance. Here, we propose several pre-FT or post-FT processing corrections to clean artefacts from interleaved ultrafast NMR spectra. Their performances are compared, and their potentialities are illustrated in a small organic molecule context. Post-FT processing corrections such as ArSub (Artefact Subtraction) or symmetrisation appear to be the most efficient ones in terms of artefact removal. While not purely single-scan, these strategies open new perspectives towards the routine use of UF 2D NMR for structural or quantitative analysis.
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Affiliation(s)
- Laetitia Rouger
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Benoît Charrier
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Meerakhan Pathan
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Serge Akoka
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Patrick Giraudeau
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France.
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21
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Giraudeau P, Frydman L. Ultrafast 2D NMR: an emerging tool in analytical spectroscopy. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2014; 7:129-61. [PMID: 25014342 PMCID: PMC5040491 DOI: 10.1146/annurev-anchem-071213-020208] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Two-dimensional nuclear magnetic resonance (2D NMR) spectroscopy is widely used in chemical and biochemical analyses. Multidimensional NMR is also witnessing increased use in quantitative and metabolic screening applications. Conventional 2D NMR experiments, however, are affected by inherently long acquisition durations, arising from their need to sample the frequencies involved along their indirect domains in an incremented, scan-by-scan nature. A decade ago, a so-called ultrafast (UF) approach was proposed, capable of delivering arbitrary 2D NMR spectra involving any kind of homo- or heteronuclear correlation, in a single scan. During the intervening years, the performance of this subsecond 2D NMR methodology has been greatly improved, and UF 2D NMR is rapidly becoming a powerful analytical tool experiencing an expanded scope of applications. This review summarizes the principles and main developments that have contributed to the success of this approach and focuses on applications that have been recently demonstrated in various areas of analytical chemistry--from the real-time monitoring of chemical and biochemical processes, to extensions in hyphenated techniques and in quantitative applications.
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Affiliation(s)
- Patrick Giraudeau
- Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation, UMR 6230, Université de Nantes, 44322 Nantes Cedex 03, France;
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Bussy U, Giraudeau P, Tea I, Boujtita M. Understanding the degradation of electrochemically-generated reactive drug metabolites by quantitative NMR. Talanta 2013; 116:554-8. [DOI: 10.1016/j.talanta.2013.07.026] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Revised: 07/05/2013] [Accepted: 07/13/2013] [Indexed: 02/06/2023]
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Abstract
Over the past 28 years there have been several thousand publications describing the use of 2D NMR to identify and characterize natural products. During this time period, the amount of sample needed for this purpose has decreased from the 20-50 mg range to under 1 mg. This has been due to both improvements in NMR hardware and methodology. This review will focus on mainly methodology improvements, particularly in pulse sequences, acquisition and processing methods which are particularly relevant to natural product research, with lesser discussion of hardware improvements.
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Zhang Z, Chen H, Wu C, Wu R, Cai S, Chen Z. Spatially encoded ultrafast high-resolution 2D homonuclear correlation spectroscopy in inhomogeneous fields. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2013; 227:39-45. [PMID: 23262331 DOI: 10.1016/j.jmr.2012.11.020] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2012] [Revised: 11/14/2012] [Accepted: 11/15/2012] [Indexed: 06/01/2023]
Abstract
Two-dimensional (2D) NMR spectroscopy shows strong vitality and unsubstitutable significance among NMR techniques. In many cases, however, it is virtually impossible to obtain high-resolution 2D spectra in inhomogeneous fields. Furthermore, conventional 2D NMR spectroscopy suffers from long acquisition time. In this paper, two new pulse sequences tracking the differences of the precession frequencies of two coupled spins are proposed to ultrafast achieve high-resolution 2D correlation spectroscopy (COSY and TOCSY) in inhomogeneous fields in a single scan. The spectral width of the indirect dimension can be reduced to improve the spectral resolution without loss of the correlative information for reconstructing the COSY and TOCSY spectra with mathematical manipulations. The theoretical analysis was given and experiments were performed to verify theoretical predictions. The results show that the proposed sequences can give correct 2D COSY and TOCSY spectra if the field inhomogeneity is linear along the orientation of encoding and decoding gradients.
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Affiliation(s)
- Zhiyong Zhang
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, Xiamen University, Fujian, China
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