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Galitz A, Nakao Y, Schupp PJ, Wörheide G, Erpenbeck D. A Soft Spot for Chemistry-Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution. Mar Drugs 2021; 19:448. [PMID: 34436287 PMCID: PMC8398655 DOI: 10.3390/md19080448] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 07/23/2021] [Accepted: 07/27/2021] [Indexed: 12/17/2022] Open
Abstract
Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal pathways and evolution of compound production in sponges. This benefits the discovery rate and yield of bioprospecting for novel marine natural products by identifying lineages with high potential of being new sources of valuable sponge compounds. In this review, we summarize the current biochemical data on sponges and compare the metabolite distribution against a sponge phylogeny. We assess compound specificity to lineages, potential convergences, and suitability as diagnostic phylogenetic markers. Our study finds compound distribution corroborating current (molecular) phylogenetic hypotheses, which include yet unaccepted polyphyly of several demosponge orders and families. Likewise, several compounds and compound groups display a high degree of lineage specificity, which suggests homologous biosynthetic pathways among their taxa, which identifies yet unstudied species of this lineage as promising bioprospecting targets.
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Affiliation(s)
- Adrian Galitz
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; (A.G.); (G.W.)
| | - Yoichi Nakao
- Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan;
| | - Peter J. Schupp
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany;
- Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany
| | - Gert Wörheide
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; (A.G.); (G.W.)
- GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
- SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany
| | - Dirk Erpenbeck
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; (A.G.); (G.W.)
- GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
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Van Kiem P, Van Minh C, Nhiem NX, Tai BH, Yen PH, Hang DTT, Dung DT, Cuc NT, Trang DT, Yen DTH, Van Doan V, Hoang NH, Huong PTT, Nam NH, Cuong NX. The chemical constituents and biological activity of some sponges in Northern Vietnam: A review. VIETNAM JOURNAL OF CHEMISTRY 2019. [DOI: 10.1002/vjch.201900041] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Phan Van Kiem
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Chau Van Minh
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Nguyen Xuan Nhiem
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Bui Huu Tai
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Pham Hai Yen
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Dan Thi Thuy Hang
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Duong Thi Dung
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Nguyen Thi Cuc
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Do Thi Trang
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Duong Thi Hai Yen
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Vu Van Doan
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Nguyen Huy Hoang
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Phan Thi Thanh Huong
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Nguyen Hoai Nam
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
| | - Nguyen Xuan Cuong
- Institute of Marine Biochemistry; Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay; Hanoi Viet Nam
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Dat TTH, Steinert G, Thi Kim Cuc N, Smidt H, Sipkema D. Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam. PeerJ 2018; 6:e4970. [PMID: 29900079 PMCID: PMC5995103 DOI: 10.7717/peerj.4970] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2017] [Accepted: 05/22/2018] [Indexed: 11/20/2022] Open
Abstract
Sponge-associated prokaryotic diversity has been studied from a wide range of marine environments across the globe. However, for certain regions, e.g., Vietnam, Thailand, Cambodia, and Singapore, an overview of the sponge-associated prokaryotic communities is still pending. In this study we characterized the prokaryotic communities from 27 specimens, comprising 18 marine sponge species, sampled from the central coastal region of Vietnam. Illumina MiSeq sequencing of 16S ribosomal RNA (rRNA) gene fragments was used to investigate sponge-associated bacterial and archaeal diversity. Overall, 14 bacterial phyla and one archaeal phylum were identified among all 27 samples. The phylum Proteobacteria was present in all sponges and the most prevalent phylum in 15 out of 18 sponge species, albeit with pronounced differences at the class level. In contrast, Chloroflexi was the most abundant phylum in Halichondria sp., whereas Spirastrella sp. and Dactylospongia sp. were dominated by Actinobacteria. Several bacterial phyla such as Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Deferribacteres, Gemmatimonadetes, and Nitrospirae were found in two-thirds of the sponge species. Moreover, the phylum Thaumarchaeota (Archaea), which is known to comprise nitrifying archaea, was highly abundant among the majority of the 18 investigated sponge species. Altogether, this study demonstrates that the diversity of prokaryotic communities associated with Vietnamese sponges is comparable to sponge-prokaryotic assemblages from well-documented regions. Furthermore, the phylogenetically divergent sponges hosted species-specific prokaryotic communities, thus demonstrating the influence of host identity on the composition and diversity of the associated communities. Therefore, this high-throughput 16S rRNA gene amplicon analysis of Vietnamese sponge-prokaryotic communities provides a foundation for future studies on sponge symbiont function and sponge-derived bioactive compounds from this region.
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Affiliation(s)
- Ton That Huu Dat
- Mientrung Institute for Scientific Research, Vietnam Academy of Science and Technology, Hanoi, Vietnam
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Georg Steinert
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Nguyen Thi Kim Cuc
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Ha Noi, Vietnam
| | - Hauke Smidt
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Detmer Sipkema
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
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Cường NX, Nhiệm NX, Thanh NV, Tài BH, Hương ĐTM, Cường PV, Nam NH, Long PQ, Kiệm PV, Minh CV. Điểm lại các nghiên cứu hóa học và hoạt tính sinh học một số loài sinh vật biển Việt Nam trong giai đoạn 2013-2017. VIETNAM JOURNAL OF CHEMISTRY 2018. [DOI: 10.15625/vjc.2018-0001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Nguyễn Xuân Cường
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | - Nguyễn Xuân Nhiệm
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | - Nguyễn Văn Thanh
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | - Bùi Hữu Tài
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | | | - Phạm Văn Cường
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | - Nguyễn Hoài Nam
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | | | - Phan Văn Kiệm
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
| | - Châu Văn Minh
- Viện Hóa sinh biển, Viện Hàn lâm Khoa học và Công nghệ Việt Nam (VAST)
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Abstract
Covering: 2015. Previous review: Nat. Prod. Rep., 2016, 33, 382-431This review covers the literature published in 2015 for marine natural products (MNPs), with 1220 citations (792 for the period January to December 2015) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1340 in 429 papers for 2015), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included.
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Affiliation(s)
- John W Blunt
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand.
| | - Brent R Copp
- School of Chemical Sciences, University of Auckland, Auckland, New Zealand
| | - Robert A Keyzers
- Centre for Biodiscovery, School of Chemical and Physical Sciences, Victoria University of Wellington, Wellington, New Zealand
| | - Murray H G Munro
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand.
| | - Michèle R Prinsep
- Chemistry, School of Science, University of Waikato, Hamilton, New Zealand
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