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For: Qin S, Zhou HX. Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond. Proteins 2013;81:2229-36. [PMID: 23873496 PMCID: PMC3842397 DOI: 10.1002/prot.24366] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2013] [Revised: 06/26/2013] [Accepted: 06/29/2013] [Indexed: 11/10/2022]
Number Cited by Other Article(s)
1
Yan Y, Wen Z, Zhang D, Huang SY. Determination of an effective scoring function for RNA-RNA interactions with a physics-based double-iterative method. Nucleic Acids Res 2019;46:e56. [PMID: 29506237 PMCID: PMC5961370 DOI: 10.1093/nar/gky113] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2017] [Accepted: 02/08/2018] [Indexed: 11/15/2022]  Open
2
Zhou HX, Pang X. Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation. Chem Rev 2018;118:1691-1741. [PMID: 29319301 DOI: 10.1021/acs.chemrev.7b00305] [Citation(s) in RCA: 590] [Impact Index Per Article: 84.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
3
Pfeiffenberger E, Chaleil RA, Moal IH, Bates PA. A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison. Proteins 2017;85:528-543. [PMID: 27935158 PMCID: PMC5396268 DOI: 10.1002/prot.25218] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Revised: 11/14/2016] [Accepted: 11/21/2016] [Indexed: 01/28/2023]
4
Yan Y, Wen Z, Wang X, Huang SY. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking. Proteins 2017;85:497-512. [PMID: 28026062 DOI: 10.1002/prot.25234] [Citation(s) in RCA: 104] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2016] [Revised: 12/15/2016] [Accepted: 12/16/2016] [Indexed: 12/23/2022]
5
Exploring the potential of global protein–protein docking: an overview and critical assessment of current programs for automatic ab initio docking. Drug Discov Today 2015;20:969-77. [DOI: 10.1016/j.drudis.2015.03.007] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Revised: 02/24/2015] [Accepted: 03/13/2015] [Indexed: 12/24/2022]
6
Moal IH, Dapkūnas J, Fernández-Recio J. Inferring the microscopic surface energy of protein-protein interfaces from mutation data. Proteins 2015;83:640-50. [PMID: 25586563 DOI: 10.1002/prot.24761] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Revised: 12/04/2014] [Accepted: 12/21/2014] [Indexed: 11/11/2022]
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