Intramolecularly Protein-Crosslinked DNA Gels: New Biohybrid Nanomaterials with Controllable Size and Catalytic Activity

Intracellular Delivery of Functional Proteins with DNA-Protein Nanogels-Lipids Complex

Using functional proteins for therapeutic purposes due to their high selectivity and/or catalytic properties can enable the control of various cellular processes; however, the transport of active proteins inside living cells remains a major challenge. In contrast, intracellular delivery of nucleic acids has become a routine method for a number of applications in gene therapy, genome editing, or immunization. Here we report a functionalizable platform constituting of DNA-protein nanogel carriers cross-linked through streptavidin-biotin or streptactin-biotin interactions and demonstrate its applicability for intracellular delivery of active proteins. We show that the nanogels can be loaded with proteins bearing either biotin, streptavidin, or strep-tag, and the resulting functionalized nanogels can be delivered into living cells after complexation with cationic lipid vectors. We use this approach for delivery of alkaline phosphatase enzyme, which is shown to keep its catalytic activity after internalization by mouse melanoma B16 cells, as demonstrated by the DDAO-phosphate assay. The resulting functionalized nanogels have dimensions on the order of 100 nm, contain around 100 enzyme molecules, and are shown to be transfectable at low lipid concentrations (charge ratio R± = 0.75). This ensures the low toxicity of our system, which in combination with high local enzyme concentration (∼100 μM) underlines potential interest of this nanoplatform for biomedical applications.

Liquid Metal Nanocores Initiated Construction of Smart DNA-Polymer Microgels with Programmable and Regulable Functions and Near-Infrared Light-Driven Locomotion

Due to their sequence-directed functions and excellent biocompatibility, smart DNA microgels have attracted considerable research interest, and the combination of DNA microgels with functional nanostructures can further expand their applications in biosensing and biomedicine. Gallium-based liquid metals (LMs) exhibiting both fluidic and metallic properties hold great promise for the development of smart soft materials; in particular, LM particles upon sonication can mediate radical-initiated polymerization reactions, thus allowing the combination of LMs and polymeric matrix to construct "soft-soft" materials. Herein, by forming active surfaces under sonication, LM nanoparticles (LM NPs) initiated localized radical polymerization reactions allow the combination of functional DNA units and different polymeric backbones to yield multifunctional core/shell microgels. The localized polymerization reaction allows fine control of the microgel compositions, and smart DNA microgels with tunable catalytic activities can be constructed. Moreover, due to the excellent photothermal effect of LM NPs, the resulting temperature gradient between microgels and surrounding solution upon NIR light irradiation can drive the oriented locomotion of the microgels, and remote control of the activity of these smart microgels can be achieved. These microgels may hold promise for various applications, such as the development of in vivo and in vitro biosensing and drug delivery systems.

Necklace-Like Nanostructures: From Fabrication, Properties to Applications

The shape-controlled synthesis of nanocrystals remains a hot research topic in nanotechnology. Particularly, the fabrication of 1D structures such as wires, rods, belts, and tubes has been an interesting and important subject within nanoscience in the last few decades. 1D necklace-like micro/nanostructures are a sophisticated geometry that has attracted increasing attention due to their anisotropic and periodic structure, intrinsic high surface area, abundant transport channels, exposure of each component to the surface, and multiscale roughness of the surface. These characteristics enable their unique electrical, optical, and catalytic properties. This review provides a comprehensive summary of the advanced research progress on the fabrication strategies, novel properties, and various applications of necklace-like structures. It begins with the main fabrication methods of necklace-like structures and subsequently details a variety of their properties and applications. It concludes with the authors' perspectives on future research and development of the necklace-like structures.

Controllably crosslinked dual enzymes enabled by genetic-encoded non-standard amino acid for efficiently enantioselective hydrogenation

In traditional method for preparing crosslinked enzymes aggregates using glutaraldehyde, random linkage is inevitable, which often destroys the enzyme active sites and severely decreases the activity. To address this issue, using genetic encode expanding, nonstandard amino acids (NSAAs) were inserted into enzyme proteins at the preselected sites for crosslinking. When aldehyde ketone reductase (AKR), alcohol dehydrogenase (ADH) and glucose dehydrogenase (GDH) were utilized as model enzymes, their mutants containing p-azido-L-phenylalanine were bio-orthogonally crosslinked with diyne to form crosslinked dual enzymes (CLDEs) acting as a cascade biological oxidation and reduction system. Then, the resultant self-purified CLDEs were characterized using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS), scanning electron microscopy (SEM), and confocal laser scanning microscopy (CLSM), etc. In the asymmetric synthesis of (S)-1-(2,6-dichloro-3-fluorophenyl) ethanol using CLDEs, high product yield (76.08%), ee value (99.99%) and reuse stability were achieved. The yield and ee value were 12.05 times and 1.39 times higher than those using traditional crosslinked enzyme aggregates, respectively. Thus, controllable insertion NSAAs in number and location can engender reasonable linkage and metal-free self-purification for target enzyme proteins. This facile and sustainable method could be further expanded to other dual and multienzyme systems for cascade biocatalysis.

Putting DNA to Work as Generic Polymeric Materials

DNA is a true polymer that stores the genetic information of an organism. With its amazing biological and polymeric characteristics, DNA has been regarded as a universal building block for the construction of diverse materials for real-world applications. Through various approaches including ligation, polymerization, chemical crosslinking, and physical crosslinking, both pure and hybrid DNA gels have been developed as generic materials. This Review discusses recent advances in the construction of DNA-based networks without considering any of DNA's genetic properties. In addition, we highlight the biomedical and non-biomedical applications of DNA as generic materials. Owing to the superb molecular recognition, self-assembly, and responsiveness of DNA, a mushrooming number of DNA materials with various properties have been developed for general utilization.

Enzymatically Active DNA-Protein Nanogels with Tunable Cross-Linking Density

Hybrid DNA-protein nanogels represent potential protein vectors and enzymatic nanoreactors for modern biotechnology. Here, we describe a new, easy, and robust method for preparation of tunable DNA-protein nanogels with controllable size and density. For this purpose, polymerase chain reaction is used to prepare highly biotinylated DNA as a soft biopolymeric backbone, which can be efficiently cross-linked via streptavidin-biotin binding. This approach enables us to control both the density and size of the resulting nanogels not only by adjusting the amount of the cross-linking streptavidin but also by using different rates of DNA biotinylation. This gives DNA-streptavidin nanogels with the size ranging from 80 nm, for the most compact state, to up to 200 nm. Furthermore, using streptavidin-enzyme conjugates allows the straightforward one-pot incorporation of enzymes during the preparation of the nanogels. Monoenzymatic and multienzymatic nanogels have been obtained in this manner, and their catalytic activities have been characterized. All tested enzymes (alkaline phosphatase (AP), horseradish peroxidase (HRP), and β-galactosidase (βGal)), incorporated individually or in a coupled manner (glucose oxidase (GOx)-HRP cascade), were shown to remain functional. The activities of AP and βGal were unchanged while that of HRP was slightly improved inside the nanogels. We demonstrate that, for HRP, it is not the DNA-to-enzyme ratio but the physical density of the functionalized DNA nanogels that is responsible for the improvement of its enzymatic activity.

Versatile synthesis of a highly porous DNA/CNT hydrogel for the adsorption of the carcinogen PAH

Herein, a novel pathway to prepare a porous structured DNA hybrid hydrogel has been described, using a transiently existing Pickering emulsion that is continuously generated during the reaction. The as-prepared highly porous gel features significantly improved capability for trace amounts of PAH removal.

Biocatalyst and Colorimetric/Fluorescent Dual Biosensors of H2O2 Constructed via Hemoglobin-Cu3(PO4)2 Organic/Inorganic Hybrid Nanoflowers

In this article, the three-dimensional hemoglobin (Hb)-Cu₃(PO₄)₂ organic/inorganic hybrid nanoflowers (Hb-Cu₃(PO₄)₂ HNFs) self-assembled by nanopetals were synthesized via a facile one-pot green synthetic method. The compositions and microstructure of the Hb-Cu₃(PO₄)₂ HNFs were well-characterized with X-ray diffraction, scanning electron microscopy, transmission electron microscopy, X-ray photoelectron spectroscopy, Fourier transform infrared spectroscopy, and UV-vis spectrometry, respectively. The as-prepared Hb-Cu₃(PO₄)₂ HNFs were to be used as a biocatalyst to construct colorimetric/fluorescent dual biosensors. The experimental results show that the colorimetric/fluorescent dual biosensors exhibited two linear responses in the range of 2-10 ppb and 20-100 ppb for H₂O₂. The colorimetric and fluorescent detection limits were 0.1 and 0.01 ppb, respectively. Compared with the free Hb, the biocatalytic activity of the Hb-Cu₃(PO₄)₂ HNFs can be improved for 3-4 times under optimal conditions. The sensing performance of these Hb-Cu₃(PO₄)₂ HNF-based dual biosensors can be contributed such that the active sites of Hb molecules were more exposed on the surface of the Cu₃(PO₄)₂ nanopetals. Second, the unique nanopetal-assembled hybrid flowerlike structure was favorable to contact the detected substance with the biosensors. The dual biosensors were successfully applied for the determination of H₂O₂ in rainwater, tap water, and waste water samples. These results show that the dual biosensors had a potential application in the field of medical analysis, environmental monitoring, and food engineering.