1
|
Ruan Y, Lu C, Xu N, He Y, Chen Y, Zhang J, Xuan J, Pan J, Fang Q, Gao H, Shen X, Ye N, Zhang Q, Mo Y. An automatic end-to-end chemical synthesis development platform powered by large language models. Nat Commun 2024; 15:10160. [PMID: 39580482 PMCID: PMC11585555 DOI: 10.1038/s41467-024-54457-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Accepted: 11/07/2024] [Indexed: 11/25/2024] Open
Abstract
The rapid emergence of large language model (LLM) technology presents promising opportunities to facilitate the development of synthetic reactions. In this work, we leveraged the power of GPT-4 to build an LLM-based reaction development framework (LLM-RDF) to handle fundamental tasks involved throughout the chemical synthesis development. LLM-RDF comprises six specialized LLM-based agents, including Literature Scouter, Experiment Designer, Hardware Executor, Spectrum Analyzer, Separation Instructor, and Result Interpreter, which are pre-prompted to accomplish the designated tasks. A web application with LLM-RDF as the backend was built to allow chemist users to interact with automated experimental platforms and analyze results via natural language, thus, eliminating the need for coding skills and ensuring accessibility for all chemists. We demonstrated the capabilities of LLM-RDF in guiding the end-to-end synthesis development process for the copper/TEMPO catalyzed aerobic alcohol oxidation to aldehyde reaction, including literature search and information extraction, substrate scope and condition screening, reaction kinetics study, reaction condition optimization, reaction scale-up and product purification. Furthermore, LLM-RDF's broader applicability and versability was validated on various synthesis tasks of three distinct reactions (SNAr reaction, photoredox C-C cross-coupling reaction, and heterogeneous photoelectrochemical reaction).
Collapse
Affiliation(s)
- Yixiang Ruan
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Chenyin Lu
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Ning Xu
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Yuchen He
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Yixin Chen
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Jian Zhang
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Jun Xuan
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
| | - Jianzhang Pan
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou, 310058, China
| | - Qun Fang
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou, 310058, China
| | - Hanyu Gao
- Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong, 999077, China
| | - Xiaodong Shen
- Chemical & Analytical Development, Suzhou Novartis Technical Development Co. Ltd., Changshu, 215537, China
| | - Ning Ye
- Rezubio Pharmaceuticals Co. Ltd., Zhuhai, 519070, China
| | - Qiang Zhang
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
- College of Computer Science and Technology, Zhejiang University, Hangzhou, 310027, China
| | - Yiming Mo
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China.
- Zhejiang-Hong Kong Joint Laboratory for Intelligent Molecule and Material Design and Synthesis, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China.
| |
Collapse
|
2
|
Adachi S, Okada Y. Electrochemical radical cation aza-Wacker cyclizations. Beilstein J Org Chem 2024; 20:1900-1905. [PMID: 39135656 PMCID: PMC11318630 DOI: 10.3762/bjoc.20.165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 07/22/2024] [Indexed: 08/15/2024] Open
Abstract
Electrochemical or photochemical single-electron oxidation of bench-stable substrates can generate radical cations that offer unique reactivities as intermediates in various bond-formation processes. Such intermediates can potentially take part in both radical and ionic bond formation; however, the mechanisms involved are complicated and not fully understood. Herein, we report electrochemical radical cation aza-Wacker cyclizations under acidic conditions, which are expected to proceed via radical cations generated by single-electron oxidation of alkenes.
Collapse
Affiliation(s)
- Sota Adachi
- Department of Applied Biological Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| | - Yohei Okada
- Department of Applied Biological Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| |
Collapse
|
3
|
Shichijo K, Shimakoshi H. Green Molecular Transformation in Dual Catalysis: Photoredox Activation of Vitamin B 12 Using Heterogeneous Photocatalyst. Chempluschem 2024; 89:e202400041. [PMID: 38385837 DOI: 10.1002/cplu.202400041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 02/21/2024] [Accepted: 02/22/2024] [Indexed: 02/23/2024]
Abstract
This concept focuses on dual-catalysis using metal complexes and heterogeneous photocatalysts. Vitamin B12 derivatives are sophisticated metal complexes that facilitate enzymatic reactions in the biological systems. The B12 enzymes inspired reactions catalytically proceed in dual-catalyst systems of B12 derivatives and heterogeneous photocatalysts, such as titanium oxide (TiO2) and metal-organic frameworks (MOFs), under light irradiation. The cobalt ions in B12 derivatives are effectively reduced by photoexcited photocatalysts, producing low-valent Co(I) species. The photoinduced nucleophilic Co(I) species react with an alkyl halide to form an organometallic complex with a Co-C bond. The Co-C bond dissociates during photolysis to generate alkyl radicals. Based on this mechanism, dual-catalysis effectively promotes various light-driven organic syntheses and light-driven dehalogenation reactions of toxic alkyl halides. The trends of the dual-catalyst system and recent progress in this field are discussed in this concept.
Collapse
Affiliation(s)
- Keita Shichijo
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Nishi-ku, Motooka, Fukuoka, 744, 819-0395, Japan
| | - Hisashi Shimakoshi
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Nishi-ku, Motooka, Fukuoka, 744, 819-0395, Japan
| |
Collapse
|
4
|
Zhang Y, Yu H, Zhai R, Zhang J, Gao C, Qi K, Yang L, Ma Q. Recent Progress in Photocatalytic Degradation of Water Pollution by Bismuth Tungstate. Molecules 2023; 28:8011. [PMID: 38138501 PMCID: PMC10745909 DOI: 10.3390/molecules28248011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 12/06/2023] [Accepted: 12/07/2023] [Indexed: 12/24/2023] Open
Abstract
Photocatalysis has emerged as a highly promising, green, and efficient technology for degrading pollutants in wastewater. Among the various photocatalysts, Bismuth tungstate (Bi2WO6) has gained significant attention in the research community due to its potential in environmental remediation and photocatalytic energy conversion. However, the limited light absorption ability and rapid recombination of photogenerated carriers hinder the further improvement of Bi2WO6's photocatalytic performance. This review aims to present recent advancements in the development of Bi2WO6-based photocatalysts. It delves into the photocatalytic mechanism of Bi2WO6 and summarizes the achieved photocatalytic characteristics by controlling its morphology, employing metal and non-metal doping, constructing semiconductor heterojunctions, and implementing defective engineering. Additionally, this review explores the practical applications of these modified Bi2WO6 photocatalysts in wastewater purification. Furthermore, this review addresses existing challenges and suggests prospects for the development of efficient Bi2WO6 photocatalysts. It is hoped that this comprehensive review will serve as a valuable reference and guide for researchers seeking to advance the field of Bi2WO6 photocatalysis.
Collapse
Affiliation(s)
- Yingjie Zhang
- College of Agriculture and Biological Science, Dali University, Dali 671000, China; (Y.Z.); (H.Y.); (R.Z.); (J.Z.); (C.G.)
- Key Laboratory of Ecological Microbial Remediation Technology of Yunnan Higher Education Institutes, Dali University, Dali 671000, China
| | - Huijuan Yu
- College of Agriculture and Biological Science, Dali University, Dali 671000, China; (Y.Z.); (H.Y.); (R.Z.); (J.Z.); (C.G.)
| | - Ruiqi Zhai
- College of Agriculture and Biological Science, Dali University, Dali 671000, China; (Y.Z.); (H.Y.); (R.Z.); (J.Z.); (C.G.)
| | - Jing Zhang
- College of Agriculture and Biological Science, Dali University, Dali 671000, China; (Y.Z.); (H.Y.); (R.Z.); (J.Z.); (C.G.)
| | - Cuiping Gao
- College of Agriculture and Biological Science, Dali University, Dali 671000, China; (Y.Z.); (H.Y.); (R.Z.); (J.Z.); (C.G.)
| | - Kezhen Qi
- College of Pharmacy, Dali University, Dali 671000, China
| | - Li Yang
- College of International Education, Dali University, Dali 671000, China;
| | - Qiang Ma
- School of Architecture and Civil Engineering, Chengdu University, Chengdu 610106, China
| |
Collapse
|
5
|
Nakayama K, Okada Y. Arene C-H Amination with N-Heteroarenes by Catalytic DDQ Photocatalysis. J Org Chem 2023; 88:5913-5922. [PMID: 37097131 DOI: 10.1021/acs.joc.3c00293] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
Arene C-H aminations using catalytic amounts of a 2,3-dichloro-5,6-dicyano-p-benzoquinone (DDQ) photocatalyst are described. Benzene, which has an oxidation potential of 2.48 V (vs SCE), was functionalized by pyrazoles, triazoles, tetrazoles, purines, and tert-butoxycarbonyl amine. Arenes underwent amination via a combination of ultraviolet (UV) light and a DDQ photocatalyst without a typical co-oxidant. Although the mechanism remains an open question, DDQH2, which is generated from DDQ after oxidation, is reactivated to DDQ under UV light irradiation conditions, possibly with the assistance of adventitious O2 and/or a solvent as the terminal oxidant(s) in this system.
Collapse
Affiliation(s)
- Kaii Nakayama
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Yohei Okada
- Department of Applied Biological Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| |
Collapse
|
7
|
Hashimoto Y, Horiguchi G, Kamiya H, Okada Y. Design of a Photocatalytic [2+2] Cycloaddition Reaction Using Redox‐Tag Strategy. Chemistry 2022; 28:e202202018. [DOI: 10.1002/chem.202202018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Indexed: 11/07/2022]
Affiliation(s)
- Yasuhiro Hashimoto
- Department of Chemical Engineering Tokyo University of Agriculture and Technology 2-24-16 Naka-cho 184-8588 Koganei Tokyo Japan
| | - Genki Horiguchi
- Energy Catalyst Technology Group Energy Process Research Institute (EPRI) National Institute of Advanced Industrial Science and Technology (AIST) 16-1 Onogawa 305-8559 Tsukuba Ibaraki Japan
| | - Hidehiro Kamiya
- Department of Chemical Engineering Tokyo University of Agriculture and Technology 2-24-16 Naka-cho 184-8588 Koganei Tokyo Japan
| | - Yohei Okada
- Department of Applied Biological Science Tokyo University of Agriculture and Technology 3-5-8 Saiwai-cho 183-8509 Fuchu Tokyo Japan
| |
Collapse
|
8
|
Nakayama K, Kamiya H, Okada Y. Radical cation Diels–Alder reactions of arylidene cycloalkanes. Beilstein J Org Chem 2022; 18:1100-1106. [PMID: 36105722 PMCID: PMC9443414 DOI: 10.3762/bjoc.18.112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 08/18/2022] [Indexed: 11/23/2022] Open
Abstract
TiO2 photoelectrochemical and electrochemical radical cation Diels–Alder reactions of arylidene cycloalkanes are described, leading to the construction of spiro ring systems. Although the mechanism remains an open question, arylidene cyclobutanes are found to be much more effective in the reaction than other cycloalkanes. Since the reaction is completed with a substoichiometric amount of electricity, a radical cation chain pathway is likely to be involved.
Collapse
Affiliation(s)
- Kaii Nakayama
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Hidehiro Kamiya
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Yohei Okada
- Department of Applied Biological Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| |
Collapse
|
9
|
Abstract
The quest to find milder and more sustainable methods to generate highly reactive, carbon-centred intermediates has led to a resurgence of interest in radical chemistry. In particular, carboxylic acids are seen as attractive radical precursors due their availability, low cost, diversity, and sustainability. Moreover, the corresponding nucleophilic carbon-radical can be easily accessed through a favourable radical decarboxylation process, extruding CO2 as a traceless by-product. This review summarizes the recent progress on using carboxylic acids directly as convenient radical precursors for the formation of carbon-carbon bonds via the 1,4-radical conjugate addition (Giese) reaction.
Collapse
Affiliation(s)
- David M Kitcatt
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
| | - Simon Nicolle
- GlaxoSmithKline, Gunnels Wood Rd, Stevenage SG1 2NY, UK
| | - Ai-Lan Lee
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
| |
Collapse
|