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Selden CR, Schilling K, Godfrey L, Yee N. Metal-binding amino acid ligands commonly found in metalloproteins differentially fractionate copper isotopes. Sci Rep 2024; 14:1902. [PMID: 38253574 PMCID: PMC11229503 DOI: 10.1038/s41598-024-52091-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 01/13/2024] [Indexed: 01/24/2024] Open
Abstract
Copper (Cu) is a cofactor in numerous key proteins and, thus, an essential element for life. In biological systems, Cu isotope abundances shift with metabolic and homeostatic state. However, the mechanisms underpinning these isotopic shifts remain poorly understood, hampering use of Cu isotopes as biomarkers. Computational predictions suggest that isotope fractionation occurs when proteins bind Cu, with the magnitude of this effect dependent on the identity and arrangement of the coordinating amino acids. This study sought to constrain equilibrium isotope fractionation values for Cu bound by common amino acids at protein metal-binding sites. Free and bound metal ions were separated via Donnan dialysis using a cation-permeable membrane. Isotope ratios of pre- and post-dialysis solutions were measured by MC-ICP-MS following purification. Sulfur ligands (cysteine) preferentially bound the light isotope (63Cu) relative to water (Δ65Cucomplex-free = - 0.48 ± 0.18‰) while oxygen ligands favored the heavy isotope (65Cu; + 0.26 ± 0.04‰ for glutamate and + 0.16 ± 0.10‰ for aspartate). Binding by nitrogen ligands (histidine) imparted no isotope effect (- 0.01 ± 0.04‰). This experimental work unequivocally demonstrates that amino acids differentially fractionate Cu isotopes and supports the hypothesis that metalloprotein biosynthesis affects the distribution of transition metal isotopes in biological systems.
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Affiliation(s)
- Corday R Selden
- Department of Marine and Coastal Sciences, Rutgers, University, New Brunswick, NJ, USA.
- Department of Earth and Planetary Sciences, Rutgers University, Piscataway, NJ, USA.
| | - Kathrin Schilling
- Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
| | - Linda Godfrey
- Department of Earth and Planetary Sciences, Rutgers University, Piscataway, NJ, USA
| | - Nathan Yee
- Department of Earth and Planetary Sciences, Rutgers University, Piscataway, NJ, USA
- Department of Environmental Sciences, Rutgers University, New Brunswick, NJ, USA
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Ujvari B, Raven N, Madsen T, Klaassen M, Dujon AM, Schultz AG, Nunney L, Lemaître J, Giraudeau M, Thomas F. Telomeres, the loop tying cancer to organismal life-histories. Mol Ecol 2022; 31:6273-6285. [PMID: 35510763 PMCID: PMC9790343 DOI: 10.1111/mec.16488] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 03/04/2022] [Accepted: 03/30/2022] [Indexed: 01/31/2023]
Abstract
Recent developments in telomere and cancer evolutionary ecology demonstrate a very complex relationship between the need of tissue repair and controlling the emergence of abnormally proliferating cells. The trade-off is balanced by natural and sexual selection and mediated via both intrinsic and environmental factors. Here, we explore the effects of telomere-cancer dynamics on life history traits and strategies as well as on the cumulative effects of genetic and environmental factors. We show that telomere-cancer dynamics constitute an incredibly complex and multifaceted process. From research to date, it appears that the relationship between telomere length and cancer risk is likely nonlinear with good evidence that both (too) long and (too) short telomeres can be associated with increased cancer risk. The ability and propensity of organisms to respond to the interplay of telomere dynamics and oncogenic processes, depends on the combination of its tissue environments, life history strategies, environmental challenges (i.e., extreme climatic conditions), pressure by predators and pollution, as well as its evolutionary history. Consequently, precise interpretation of telomere-cancer dynamics requires integrative and multidisciplinary approaches. Finally, incorporating information on telomere dynamics and the expression of tumour suppressor genes and oncogenes could potentially provide the synergistic overview that could lay the foundations to study telomere-cancer dynamics at ecosystem levels.
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Affiliation(s)
- Beata Ujvari
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Nynke Raven
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Thomas Madsen
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Marcel Klaassen
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Antoine M. Dujon
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Aaron G. Schultz
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityGeelongVictoriaAustralia
| | - Leonard Nunney
- Department of Evolution, Ecology and Organismal BiologyUniversity of California, RiversideRiversideCaliforniaUSA
| | - Jean‐François Lemaître
- Université de LyonLyonFrance,Laboratoire de Biométrie et Biologie ÉvolutiveUniversité Lyon 1CNRSUMR5558VilleurbanneFrance
| | - Mathieu Giraudeau
- CREEC/CANECEV (CREES)MIVEGECUnité Mixte de RecherchesIRD 224–CNRS 5290–Université de MontpellierMontpellierFrance,LIENSsUMR 7266 CNRS‐La Rochelle UniversitéLa RochelleFrance
| | - Frédéric Thomas
- CREEC/CANECEV (CREES)MIVEGECUnité Mixte de RecherchesIRD 224–CNRS 5290–Université de MontpellierMontpellierFrance
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Moreau J, Rabdeau J, Badenhausser I, Giraudeau M, Sepp T, Crépin M, Gaffard A, Bretagnolle V, Monceau K. Pesticide impacts on avian species with special reference to farmland birds: a review. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:790. [PMID: 36107257 DOI: 10.1007/s10661-022-10394-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 08/12/2022] [Indexed: 06/15/2023]
Abstract
For decades, we have observed a major biodiversity crisis impacting all taxa. Avian species have been particularly well monitored over the long term, documenting their declines. In particular, farmland birds are decreasing worldwide, but the contribution of pesticides to their decline remains controversial. Most studies addressing the effects of agrochemicals are limited to their assessment under controlled laboratory conditions, the determination of lethal dose 50 (LD50) values and testing in a few species, most belonging to Galliformes. They often ignore the high interspecies variability in sensitivity, delayed sublethal effects on the physiology, behaviour and life-history traits of individuals and their consequences at the population and community levels. Most importantly, they have entirely neglected to test for the multiple exposure pathways to which individuals are subjected in the field (cocktail effects). The present review aims to provide a comprehensive overview for ecologists, evolutionary ecologists and conservationists. We aimed to compile the literature on the effects of pesticides on bird physiology, behaviour and life-history traits, collecting evidence from model and wild species and from field and lab experiments to highlight the gaps that remain to be filled. We show how subtle nonlethal exposure might be pernicious, with major consequences for bird populations and communities. We finally propose several prospective guidelines for future studies that may be considered to meet urgent needs.
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Affiliation(s)
- Jérôme Moreau
- Équipe Écologie Évolutive, UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche-Comté, Dijon, France
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France
| | - Juliette Rabdeau
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France
| | - Isabelle Badenhausser
- Unité de Recherche Pluridisciplinaire Prairies Plantes Fourragères, INRAE, 86600, Lusignan, France
| | - Mathieu Giraudeau
- UMR IRD, CREEC, Université de Montpellier, 224-CNRS 5290, Montpellier, France
- Centre de Recherche en Écologie Et Évolution de La Sante (CREES), Montpellier, France
- Littoral Environnement Et Sociétés (LIENSs), UMR 7266, CNRS- La Rochelle Université, La Rochelle, France
| | - Tuul Sepp
- Department of Zoology, University of Tartu, Tartu, Estonia
| | - Malaury Crépin
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France
| | - Agathe Gaffard
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France
| | - Vincent Bretagnolle
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France
- LTSER "Zone Atelier Plaine & Val de Sèvre", CNRS, 79360, Villiers-en-Bois, France
| | - Karine Monceau
- UMR CNRS 7372 Centre d'Études Biologiques de Chizé, La Rochelle Université, 79360, Villiers-en-Bois, France.
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Sullivan KV, Kidder JA, Junqueira TP, Vanhaecke F, Leybourne MI. Emerging applications of high-precision Cu isotopic analysis by MC-ICP-MS. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156084. [PMID: 35605848 DOI: 10.1016/j.scitotenv.2022.156084] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 05/16/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
As a component of many minerals and an essential trace element in most aerobic organisms, the transition metal element Cu is important for studying reduction-oxidation (redox) interactions and metal cycling in the total environment (lithosphere, atmosphere, biosphere, hydrosphere, and anthroposphere). The "fractionation" or relative partitioning of the naturally occurring "heavy" (65Cu) and "light" (63Cu) isotope between two coexisting phases in a system occurs according to bonding environment and/or as a result of a slight difference in the rate at which these isotopes take part in physical processes and chemical reactions (in absence of equilibrium). Due to this behaviour, Cu isotopic analysis can be used to study a range of geochemical and biological processes that cannot be elucidated with Cu concentrations alone. The shift between Cu+ and Cu2+ is accompanied by a large degree of Cu isotope fractionation, enabling the Cu isotope to be applied as a vector in mineral exploration, tracer of origin, transport, and fate of metal contaminants in the environment, biomonitor, and diagnostic/prognostic marker of disease, among other applications. In this contribution, we (1) discuss the analytical protocols that are currently available to perform Cu isotopic analysis, (2) provide a compilation of published δ65Cu values for matrix reference materials, (3) review Cu isotope fractionation mechanisms, (4) highlight emerging applications of Cu isotopic analysis, and (5) discuss future research avenues.
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Affiliation(s)
- Kaj V Sullivan
- Department of Geological Sciences and Geological Engineering, Queens University, Kingston, ON, Canada; Atomic & Mass Spectrometry - A&MS Research Unit, Department of Chemistry, Ghent University, Ghent, Belgium.
| | | | - Tassiane P Junqueira
- Department of Geological Sciences and Geological Engineering, Queens University, Kingston, ON, Canada
| | - Frank Vanhaecke
- Atomic & Mass Spectrometry - A&MS Research Unit, Department of Chemistry, Ghent University, Ghent, Belgium
| | - Matthew I Leybourne
- Department of Geological Sciences and Geological Engineering, Queens University, Kingston, ON, Canada; Arthur B. McDonald Canadian Astroparticle Physics Research Institute, Department of Physics, Engineering Physics & Astronomy, Queen's University, Kingston, Ontario, Canada
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6
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Hamede R, Owen R, Siddle H, Peck S, Jones M, Dujon AM, Giraudeau M, Roche B, Ujvari B, Thomas F. The ecology and evolution of wildlife cancers: Applications for management and conservation. Evol Appl 2020; 13:1719-1732. [PMID: 32821279 PMCID: PMC7428810 DOI: 10.1111/eva.12948] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 02/23/2020] [Accepted: 02/28/2020] [Indexed: 02/06/2023] Open
Abstract
Ecological and evolutionary concepts have been widely adopted to understand host-pathogen dynamics, and more recently, integrated into wildlife disease management. Cancer is a ubiquitous disease that affects most metazoan species; however, the role of oncogenic phenomena in eco-evolutionary processes and its implications for wildlife management and conservation remains undeveloped. Despite the pervasive nature of cancer across taxa, our ability to detect its occurrence, progression and prevalence in wildlife populations is constrained due to logistic and diagnostic limitations, which suggests that most cancers in the wild are unreported and understudied. Nevertheless, an increasing number of virus-associated and directly transmissible cancers in terrestrial and aquatic environments have been detected. Furthermore, anthropogenic activities and sudden environmental changes are increasingly associated with cancer incidence in wildlife. This highlights the need to upscale surveillance efforts, collection of critical data and developing novel approaches for studying the emergence and evolution of cancers in the wild. Here, we discuss the relevance of malignant cells as important agents of selection and offer a holistic framework to understand the interplay of ecological, epidemiological and evolutionary dynamics of cancer in wildlife. We use a directly transmissible cancer (devil facial tumour disease) as a model system to reveal the potential evolutionary dynamics and broader ecological effects of cancer epidemics in wildlife. We provide further examples of tumour-host interactions and trade-offs that may lead to changes in life histories, and epidemiological and population dynamics. Within this framework, we explore immunological strategies at the individual level as well as transgenerational adaptations at the population level. Then, we highlight the need to integrate multiple disciplines to undertake comparative cancer research at the human-domestic-wildlife interface and their environments. Finally, we suggest strategies for screening cancer incidence in wildlife and discuss how to integrate ecological and evolutionary concepts in the management of current and future cancer epizootics.
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Affiliation(s)
- Rodrigo Hamede
- School of Natural SciencesUniversity of TasmaniaHobartTas.Australia
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityVic.Australia
| | - Rachel Owen
- Centre for Biological SciencesUniversity of SouthamptonSouthamptonUK
| | - Hannah Siddle
- Centre for Biological SciencesUniversity of SouthamptonSouthamptonUK
| | - Sarah Peck
- Wildlife Veterinarian, Veterinary Register of TasmaniaSouth HobartTas.Australia
| | - Menna Jones
- School of Natural SciencesUniversity of TasmaniaHobartTas.Australia
| | - Antoine M. Dujon
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityVic.Australia
| | - Mathieu Giraudeau
- Centre de Recherches Ecologiques et Evolutives sur le Cancer/Centre de Recherches en Ecologie et Evolution de la SantéUnité Mixte de RecherchesInstitut de Recherches pour le Développement 224‐Centre National de la Recherche Scientifique 5290‐Université de MontpellierMontpellierFrance
| | - Benjamin Roche
- Centre de Recherches Ecologiques et Evolutives sur le Cancer/Centre de Recherches en Ecologie et Evolution de la SantéUnité Mixte de RecherchesInstitut de Recherches pour le Développement 224‐Centre National de la Recherche Scientifique 5290‐Université de MontpellierMontpellierFrance
| | - Beata Ujvari
- School of Natural SciencesUniversity of TasmaniaHobartTas.Australia
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityVic.Australia
| | - Frédéric Thomas
- Centre de Recherches Ecologiques et Evolutives sur le Cancer/Centre de Recherches en Ecologie et Evolution de la SantéUnité Mixte de RecherchesInstitut de Recherches pour le Développement 224‐Centre National de la Recherche Scientifique 5290‐Université de MontpellierMontpellierFrance
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