1
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Zhang JR, Wang SY, Hua W. Core Hole Effect to Valence Excitations: Tracking and Visualizing the Same Excitation in XPS Shake-Up Satellites and UV Absorption Spectra. J Chem Theory Comput 2024; 20:6125-6133. [PMID: 38994655 DOI: 10.1021/acs.jctc.4c00521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
Abstract
Introducing a core hole significantly alters the electronic structure of a molecule, and various X-ray spectroscopy techniques are available for probing the valence electronic structure in the presence of a core hole. In this study, we visually demonstrate the influence of a core hole on valence excitations by computing the ultraviolet absorption spectra and the shake-up satellites in X-ray photoelectron spectra for pyrrole, furan, and thiophene, as complemented by the natural transition orbital (NTO) analysis over transitions with and without a core hole. Employing equivalent core hole time-dependent density functional theory (ECH-TDDFT) and TDDFT methods, we achieved balanced accuracy in both spectra for reliable comparative analysis. We tracked the same involved valence transition in both spectra, offering a vivid illustration of the core hole effect via the change in corresponding particle NTOs introduced by a 1s core hole on a Cα, Cβ, or O atom. Our analysis deepens the understanding of the core hole effect on valence transitions, a phenomenon ubiquitously observed in general X-ray spectroscopic analyses.
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Affiliation(s)
- Jun-Rong Zhang
- MIIT Key Laboratory of Semiconductor Microstructure and Quantum Sensing, Department of Applied Physics, School of Physics, Nanjing University of Science and Technology, 210094 Nanjing, China
| | - Sheng-Yu Wang
- MIIT Key Laboratory of Semiconductor Microstructure and Quantum Sensing, Department of Applied Physics, School of Physics, Nanjing University of Science and Technology, 210094 Nanjing, China
| | - Weijie Hua
- MIIT Key Laboratory of Semiconductor Microstructure and Quantum Sensing, Department of Applied Physics, School of Physics, Nanjing University of Science and Technology, 210094 Nanjing, China
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2
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Kanungo B, Rufus ND, Gavini V. Efficient All-Electron Time-Dependent Density Functional Theory Calculations Using an Enriched Finite Element Basis. J Chem Theory Comput 2023; 19:978-991. [PMID: 36656153 DOI: 10.1021/acs.jctc.2c01052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
We present an efficient and systematically convergent approach to all-electron real-time time-dependent density functional theory (TDDFT) calculations using a mixed basis, termed as enriched finite element (EFE) basis. The EFE basis augments the classical finite element basis (CFE) with a compactly supported numerical atom-centered basis, obtained from atomic ground-state DFT calculations. Particularly, we orthogonalize the enrichment functions with respect to the classical finite element basis to ensure good conditioning of the resultant basis. We employ the second-order Magnus propagator in conjunction with an adaptive Krylov subspace method for efficient time evolution of the Kohn-Sham orbitals. We rely on a priori error estimates to guide our choice of an adaptive finite element mesh as well as the time step to be used in the TDDFT calculations. We observe close to optimal rates of convergence of the dipole moment with respect to spatial and temporal discretizations. Notably, we attain a 50-100 times speedup for the EFE basis over the CFE basis. We also demonstrate the efficacy of the EFE basis for both linear and nonlinear responses by studying the absorption spectra in sodium clusters, the linear to nonlinear response transition in the green fluorescence protein chromophore, and the higher harmonic generation in the magnesium dimer. Lastly, we attain good parallel scalability of our numerical implementation of the EFE basis for up to ∼1000 processors, using a benchmark system of a 50-atom sodium nanocluster.
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Affiliation(s)
- Bikash Kanungo
- Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan48109, United States
| | - Nelson D Rufus
- Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan48109, United States
| | - Vikram Gavini
- Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan48109, United States.,Department of Materials Science and Engineering, University of Michigan, Ann Arbor, Michigan48109, United States
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3
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Abstract
Major advances in X-ray sources including the development of circularly polarized and orbital angular momentum pulses make it possible to probe matter chirality at unprecedented energy regimes and with Ångström and femtosecond spatiotemporal resolutions. We survey the theory of stationary and time-resolved nonlinear chiral measurements that can be carried out in the X-ray regime using tabletop X-ray sources or large scale (XFEL, synchrotron) facilities. A variety of possible signals and their information content are discussed.
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Affiliation(s)
- Jérémy R Rouxel
- Université de Lyon, UJM-Saint-Etienne, CNRS, IOGS, Laboratoire Hubert Curien UMR 5516, Saint-Etienne F-42023, France
| | - Shaul Mukamel
- Department of Chemistry and Physics & Astronomy, University of California, Irvine, California 92697-2025, United States
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4
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Nascimento DR, Govind N. Computational approaches for XANES, VtC-XES, and RIXS using linear-response time-dependent density functional theory based methods. Phys Chem Chem Phys 2022; 24:14680-14691. [PMID: 35699090 DOI: 10.1039/d2cp01132h] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The emergence of state-of-the-art X-ray light sources has paved the way for novel spectroscopies that take advantage of their atomic specificity to shed light on fundamental physical, chemical, and biological processes both in the static and time domains. The success of these experiments hinges on the ability to interpret and predict core-level spectra, which has opened avenues for theory to play a key role. Over the last two decades, linear-response time-dependent density functional theory (LR-TDDFT), despite various theoretical challenges, has become a computationally attractive and versatile framework to study excited-state spectra including X-ray spectroscopies. In this context, we focus our discussion on LR-TDDFT approaches for the computation of X-ray Near-Edge Structure (XANES), Valence-to-Core X-ray Emission (VtC-XES), and Resonant Inelastic X-ray Scattering (RIXS) spectroscopies in molecular systems with an emphasis on Gaussian basis set implementations. We illustrate these approaches with applications and provide a brief outlook of possible new directions.
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Affiliation(s)
- Daniel R Nascimento
- Department of Chemistry, The University of Memphis, Memphis, TN, 38152, USA.
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
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5
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Du X, Wang SY, Wei M, Zhang JR, Ge G, Hua W. A theoretical library of N1s core binding energies of polynitrogen molecules and ions in the gas phase. Phys Chem Chem Phys 2022; 24:8196-8207. [DOI: 10.1039/d2cp00069e] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Polynitrogen molecules and ions are important building blocks of high energy density compounds(HEDCs). High energy bonds formed at the N sites can be effectively probed by the X-ray photoelectron spectroscopy...
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6
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Serrat C. Resonantly Enhanced Difference-Frequency Generation in the Core X-ray Absorption of Molecules. J Phys Chem A 2021; 125:10706-10710. [PMID: 34910497 PMCID: PMC8724795 DOI: 10.1021/acs.jpca.1c06950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We use real-time time-dependent density functional theory simulations to numerically demonstrate that resonantly enhanced difference-frequency generation (re-DFG) involving intense ultrashort coherent X-ray pulses can selectively excite core states of atoms in molecules. As a model case, we evaluate the spectral selectivity of re-DFG excitation of the oxygen K-edge by illumination of a single gas-phase water molecule with two-color X-ray pulses of different photon energies and durations. The re-DFG excitation is further probed by a small delayed pulse with central photon energy resonant with the oxygen K-edge peak absorption line. Based on these results, we anticipate that highly selective excitation by re-DFG X-ray nonlinear processes might be achieved in more complex molecular systems and bulk materials by using highly penetrating two-color hard X-ray pulses, with extensive applications.
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Affiliation(s)
- Carles Serrat
- Department of Physics, Polytechnic University of Catalonia, Colom 11, 08222 Terrassa (Barcelona), Spain
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7
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Kochetov V, Bokarev SI. RhoDyn: A ρ-TD-RASCI Framework to Study Ultrafast Electron Dynamics in Molecules. J Chem Theory Comput 2021; 18:46-58. [PMID: 34965135 DOI: 10.1021/acs.jctc.1c01097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article presents the program module RhoDyn as part of the OpenMOLCAS project intended to study ultrafast electron dynamics within the density-matrix-based time-dependent restricted active space configuration interaction framework (ρ-TD-RASCI). The formalism allows for the treatment of spin-orbit coupling effects, accounts for nuclear vibrations in the form of a vibrational heat bath, and naturally incorporates (auto)ionization effects. Apart from describing the theory behind and the program workflow, the paper also contains examples of its application to the simulations of the linear L2,3 absorption spectra of a titanium complex, high harmonic generation in the hydrogen molecule, ultrafast charge migration in benzene and iodoacetylene, and spin-flip dynamics in the core excited states of iron complexes.
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Affiliation(s)
- Vladislav Kochetov
- Institut für Physik, Universität Rostock, A.-Einstein-Strasse 23-24, 18059 Rostock, Germany
| | - Sergey I Bokarev
- Institut für Physik, Universität Rostock, A.-Einstein-Strasse 23-24, 18059 Rostock, Germany
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8
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Fouda AEA, Ho PJ. Site-specific generation of excited state wavepackets with high-intensity attosecond x rays. J Chem Phys 2021; 154:224111. [PMID: 34241215 DOI: 10.1063/5.0050891] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
High-intensity attosecond x rays can produce coherent superpositions of valence-excited states through two-photon Raman transitions. The broad-bandwidth, high-field nature of the pulses results in a multitude of accessible excited states. Multiconfigurational quantum chemistry with the time-dependent Schrödinger equation is used to examine population transfer dynamics in stimulated x-ray Raman scattering of the nitric oxide oxygen and nitrogen K-edges. Two pulse schemes initiate wavepackets of different characters and demonstrate how chemical differences between core-excitation pathways affect the dynamics. The population transfer to valence-excited states is found to be sensitive to the electronic structure and pulse conditions, highlighting complexities attributed to the Rabi frequency. The orthogonally polarized two-color-pulse setup has increased selectivity while facilitating longer, less intense pulses than the one-pulse setup. Population transfer in the 1s → Rydberg region is more effective but less selective at the nitrogen K-edge; the selectivity is reduced by double core-excited states. Result interpretation is aided by resonant inelastic x-ray scattering maps.
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Affiliation(s)
- Adam E A Fouda
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 S Cass Avenue, Lemont, Illinois 60439, USA
| | - Phay J Ho
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 S Cass Avenue, Lemont, Illinois 60439, USA
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9
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Rott F, Reduzzi M, Schnappinger T, Kobayashi Y, Chang KF, Timmers H, Neumark DM, de Vivie-Riedle R, Leone SR. Ultrafast strong-field dissociation of vinyl bromide: An attosecond transient absorption spectroscopy and non-adiabatic molecular dynamics study. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2021; 8:034104. [PMID: 34169117 PMCID: PMC8208825 DOI: 10.1063/4.0000102] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 05/24/2021] [Indexed: 06/13/2023]
Abstract
Attosecond extreme ultraviolet (XUV) and soft x-ray sources provide powerful new tools for studying ultrafast molecular dynamics with atomic, state, and charge specificity. In this report, we employ attosecond transient absorption spectroscopy (ATAS) to follow strong-field-initiated dynamics in vinyl bromide. Probing the Br M edge allows one to assess the competing processes in neutral and ionized molecular species. Using ab initio non-adiabatic molecular dynamics, we simulate the neutral and cationic dynamics resulting from the interaction of the molecule with the strong field. Based on the dynamics results, the corresponding time-dependent XUV transient absorption spectra are calculated by applying high-level multi-reference methods. The state-resolved analysis obtained through the simulated dynamics and related spectral contributions enables a detailed and quantitative comparison with the experimental data. The main outcome of the interaction with the strong field is unambiguously the population of the first three cationic states, D 1, D 2, and D 3. The first two show exclusively vibrational dynamics while the D 3 state is characterized by an ultrafast dissociation of the molecule via C-Br bond rupture within 100 fs in 50% of the analyzed trajectories. The combination of the three simulated ionic transient absorption spectra is in excellent agreement with the experimental results. This work establishes ATAS in combination with high-level multi-reference simulations as a spectroscopic technique capable of resolving coupled non-adiabatic electronic-nuclear dynamics in photoexcited molecules with sub-femtosecond resolution.
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Affiliation(s)
- Florian Rott
- Department of Chemistry, LMU Munich, 81377 Munich, Germany
| | - Maurizio Reduzzi
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | | | - Yuki Kobayashi
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Kristina F. Chang
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Henry Timmers
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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10
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Conti I, Cerullo G, Nenov A, Garavelli M. Ultrafast Spectroscopy of Photoactive Molecular Systems from First Principles: Where We Stand Today and Where We Are Going. J Am Chem Soc 2020; 142:16117-16139. [PMID: 32841559 PMCID: PMC7901644 DOI: 10.1021/jacs.0c04952] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
![]()
Computational spectroscopy is becoming a mandatory tool for the interpretation of the
complex, and often congested, spectral maps delivered by modern non-linear multi-pulse
techniques. The fields of Electronic Structure Methods,
Non-Adiabatic Molecular Dynamics, and Theoretical
Spectroscopy represent the three pillars of the virtual ultrafast
optical spectrometer, able to deliver transient spectra in
silico from first principles. A successful simulation strategy requires a
synergistic approach that balances between the three fields, each one having its very
own challenges and bottlenecks. The aim of this Perspective is to demonstrate that,
despite these challenges, an impressive agreement between theory and experiment is
achievable now regarding the modeling of ultrafast photoinduced processes in complex
molecular architectures. Beyond that, some key recent developments in the three fields
are presented that we believe will have major impacts on spectroscopic simulations in
the very near future. Potential directions of development, pending challenges, and
rising opportunities are illustrated.
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Affiliation(s)
- Irene Conti
- Dipartimento di Chimica Industriale, Università degli Studi di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
| | - Giulio Cerullo
- Dipartimento di Fisica, Politecnico di Milano, IFN-CNR, Piazza Leonardo da Vinci 32, I-20133 Milano, Italy
| | - Artur Nenov
- Dipartimento di Chimica Industriale, Università degli Studi di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale, Università degli Studi di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
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11
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Carter-Fenk K, Herbert JM. State-Targeted Energy Projection: A Simple and Robust Approach to Orbital Relaxation of Non-Aufbau Self-Consistent Field Solutions. J Chem Theory Comput 2020; 16:5067-5082. [DOI: 10.1021/acs.jctc.0c00502] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Kevin Carter-Fenk
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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12
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Hua W, Tian G, Luo Y. Theoretical assessment of vibrationally resolved C1s X-ray photoelectron spectra of simple cyclic molecules. Phys Chem Chem Phys 2020; 22:20014-20026. [DOI: 10.1039/d0cp02970j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vibrationally-resolved K-edge XPS simulation by the full/equivalent core-hole method is enabled and assessment of the C1s spectra of cyclic molecules shows excellent/acceptable agreement with the experiment.
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Affiliation(s)
- Weijie Hua
- Department of Applied Physics
- School of Science
- Nanjing University of Science and Technology
- 210094 Nanjing
- China
| | - Guangjun Tian
- Key Laboratory for Microstructural Material Physics of Hebei Province
- School of Science
- Yanshan University
- Qinhuangdao 066004
- China
| | - Yi Luo
- Hefei National Laboratory for Physical Science at the Microscale
- University of Science and Technology of China
- 230026 Hefei
- China
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13
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Hua W, Mukamel S, Luo Y. Transient X-ray Absorption Spectral Fingerprints of the S 1 Dark State in Uracil. J Phys Chem Lett 2019; 10:7172-7178. [PMID: 31625754 DOI: 10.1021/acs.jpclett.9b02692] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Low-lying dark nπ* states play an important role in many photophysical and photochemical processes of organic chromophores. Transient X-ray absorption spectroscopy (TXAS) provides a powerful technique for probing the dynamics of valence states by exciting the electrons into high-lying core excited states. We employ multiconfigurational self-consistent field calculations to investigate the TXAS of uracil along its nonradiative photodecay pathways. An open issue is whether dark nπ* state S1 (n is the lone pair localized on an oxygen atom) is accessible when bright ππ* state S2 is selectively excited. Vertical core excitations were calculated along the potential energy surfaces of the three lowest states, S0-S2, interpolated between two minima and two minimum-energy conical intersections. Computed TXAS data from the C, N, and O K edges show distinct spectral fingerprints of the dark state in all spectral regimes. At the O 1s edge, the nπ* state has a very strong absorption at 526-527 eV, while at the C (N) 1s edge, by contrast, there is almost zero (very weak) absorption at 279-282 eV (397-398 eV). All K-edge spectra can be used to sensitively detect the dark states. Our proposed O 1s feature has already been observed in a recent TXAS experiment with thymine. Natural transition orbital analysis is used to interpret all dominant features of the three lowest-valence states along the reaction coordinate and reveal some important valence fine-structure information from the core excitation.
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Affiliation(s)
- Weijie Hua
- Department of Applied Physics, School of Science , Nanjing University of Science and Technology , 210094 Nanjing , China
- Department of Theoretical Chemistry and Biology, School of Engineering Sciences in Chemistry, Biotechnology and Health , KTH Royal Institute of Technology , S-106 91 Stockholm , Sweden
| | - Shaul Mukamel
- Department of Chemistry and Department of Physics and Astronomy , University of California, Irvine , Irvine , California 92697 , United States
| | - Yi Luo
- Hefei National Laboratory for Physical Science at the Microscale , University of Science and Technology of China , 230026 Hefei , China
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14
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Bokarev SI, Kühn O. Theoretical X‐ray spectroscopy of transition metal compounds. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1433] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Oliver Kühn
- Institut für Physik Universität Rostock Rostock Germany
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15
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Li H, Han J, Zhao H, Liu X, Luo Y, Shi Y, Liu C, Jin M, Ding D. Lighting Up the Invisible Twisted Intramolecular Charge Transfer State by High Pressure. J Phys Chem Lett 2019; 10:748-753. [PMID: 30704239 DOI: 10.1021/acs.jpclett.9b00026] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The twisted intramolecular charge transfer (TICT) state plays an important role in determining the performance of optoelectronic devices. However, for some nonfluorescent TICT molecules, the "invisible" TICT state could only be visualized by modifying the molecular structure. Here, we introduce a new facile pressure-induced approach to light up the TICT state through the use of a pressure-related liquid-solid phase transition of the surrounding solvent. Combining ultrafast spectroscopy and quantum chemical calculations, it reveals that the "invisible" TICT state can emit fluorescence when the rotation of a donor group is restricted by the frozen acetonitrile solution. Furthermore, the TICT process can even be effectively regulated by the external pressure. Our study offers a unique strategy to achieve dual fluorescence behavior in charge transfer molecules and is of significance for optoelectronic and biomedical applications.
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Affiliation(s)
- Hui Li
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Jianhui Han
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Huifang Zhao
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Xiaochun Liu
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale , University of Science and Technology of China , Hefei , Anhui 230026 , China
| | - Ying Shi
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Cailong Liu
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Mingxing Jin
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
| | - Dajun Ding
- Institute of Atomic and Molecular Physics , Jilin University , Changchun 130012 , China
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16
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Tenório BN, de Moura CE, Oliveira RR, Rocha AB. Transitions energies, optical oscillator strengths and partial potential energy surfaces of inner-shell states of water clusters. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.04.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Cho D, Rouxel JR, Kowalewski M, Lee JY, Mukamel S. Attosecond X-ray Diffraction Triggered by Core or Valence Ionization of a Dipeptide. J Chem Theory Comput 2017; 14:329-338. [DOI: 10.1021/acs.jctc.7b00920] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Daeheum Cho
- Department
of Chemistry, University of California, Irvine, California 92697-2025, United States
- School
of Advanced Materials Science and Engineering, SKKU Advanced Institute
of Nanotechnology (SAINT), Sungkyunkwan University, Suwon 16419, Republic of Korea
| | - Jérémy R. Rouxel
- Department
of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Markus Kowalewski
- Department
of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Jin Yong Lee
- Department
of Chemistry, Sungkyunkwan University, Suwon 16419, Republic of Korea
| | - Shaul Mukamel
- Department
of Chemistry, University of California, Irvine, California 92697-2025, United States
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18
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Wang H, Bokarev SI, Aziz SG, Kühn O. Density matrix-based time-dependent configuration interaction approach to ultrafast spin-flip dynamics. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1294267] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Huihui Wang
- Institut für Physik, Universität Rostock , Rostock, Germany
| | | | - Saadullah G. Aziz
- Chemistry Department, Faculty of Science, King Abdulaziz University , Jeddah, Saudi Arabia
| | - Oliver Kühn
- Institut für Physik, Universität Rostock , Rostock, Germany
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19
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Preuße M, Bokarev SI, Aziz SG, Kühn O. Towards an ab initio theory for metal L-edge soft X-ray spectroscopy of molecular aggregates. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2016; 3:062601. [PMID: 27679809 PMCID: PMC5010561 DOI: 10.1063/1.4961953] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Accepted: 06/03/2016] [Indexed: 06/06/2023]
Abstract
The Frenkel exciton model was adapted to describe X-ray absorption and resonant inelastic scattering spectra of polynuclear transition metal complexes by means of the restricted active space self-consistent field method. The proposed approach allows to substantially decrease the requirements on computational resources if compared to a full supermolecular quantum chemical treatment. This holds true, in particular, in cases where the dipole approximation to the electronic transition charge density can be applied. The computational protocol was applied to the calculation of X-ray spectra of the hemin complex, which forms dimers in aqueous solution. The aggregation effects were found to be comparable to the spectral alterations due to the replacement of the axial ligand by solvent molecules.
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Affiliation(s)
- Marie Preuße
- Institut für Physik, Universität Rostock , Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Sergey I Bokarev
- Institut für Physik, Universität Rostock , Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Saadullah G Aziz
- Chemistry Department, Faculty of Science, King Abdulaziz University , 21589 Jeddah, Saudi Arabia
| | - Oliver Kühn
- Institut für Physik, Universität Rostock , Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
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20
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Hua W, Bennett K, Zhang Y, Luo Y, Mukamel S. Study of double core hole excitations in molecules by X-ray double-quantum-coherence signals: a multi-configuration simulation. Chem Sci 2016; 7:5922-5933. [PMID: 30034734 PMCID: PMC6022231 DOI: 10.1039/c6sc01571a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2016] [Accepted: 05/11/2016] [Indexed: 12/02/2022] Open
Abstract
The multi-configurational self-consistent field method is employed to simulate the two-dimensional all-X-ray double-quantum-coherence (XDQC) spectroscopy, a four-wave mixing signal that provides direct signatures of double core hole (DCH) states. The valence electronic structure is probed by capturing the correlation between the single (SCH) and double core hole states. The state-averaged restricted-active-space self-consistent field (SA-RASSCF) approach is used which can treat the valence, SCH, and DCH states at the same theoretical level, and applies to all types of DCHs (located on one or two atoms, K-edge or L-edge), with both accuracy and efficiency. Orbital relaxation introduced by the core hole(s) and the static electron correlation is properly accounted for. The XDQC process can take place via different intermediate DCH state channels by tuning the pulse frequencies. We simulate the XDQC signals for the three isomers of aminophenol at 8 pulse frequency configurations, covering all DCH pathways involving the N1s and O1s core hole (N1sN1s, O1sO1s and N1sO1s), which reveal different patterns of valence excitations.
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Affiliation(s)
- Weijie Hua
- Department of Chemistry , University of California , Irvine , CA 92697-2025 , USA .
- Department of Theoretical Chemistry and Biology , School of Biotechnology , KTH Royal Institute of Technology , S-10691 Stockholm , Sweden
| | - Kochise Bennett
- Department of Chemistry , University of California , Irvine , CA 92697-2025 , USA .
| | - Yu Zhang
- Department of Chemistry , University of California , Irvine , CA 92697-2025 , USA .
| | - Yi Luo
- Department of Theoretical Chemistry and Biology , School of Biotechnology , KTH Royal Institute of Technology , S-10691 Stockholm , Sweden
- Hefei National Laboratory for Physical Sciences at the Microscale , University of Science and Technology of China , Hefei , Anhui 230026 , China
| | - Shaul Mukamel
- Department of Chemistry , University of California , Irvine , CA 92697-2025 , USA .
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21
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Abstract
A complex polarization propagator approach has been developed to third order and implemented in density functional theory (DFT), allowing for the direct calculation of nonlinear molecular properties in the X-ray wavelength regime without explicitly addressing the excited-state manifold. We demonstrate the utility of this propagator method for the modeling of coherent near-edge X-ray two-photon absorption using, as an example, DFT as the underlying electronic structure model. Results are compared with the corresponding near-edge X-ray absorption fine structure spectra, illuminating the differences in the role of symmetry, localization, and correlation between the two spectroscopies. The ramifications of this new technique for nonlinear X-ray research are briefly discussed.
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Affiliation(s)
- Tobias Fahleson
- Department of Physics, Chemistry and Biology, Linköping University , SE-581 83 Linköping, Sweden
| | - Hans Ågren
- Division of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology , SE-106 91, Stockholm, Sweden
| | - Patrick Norman
- Department of Physics, Chemistry and Biology, Linköping University , SE-581 83 Linköping, Sweden
- Division of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology , SE-106 91, Stockholm, Sweden
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22
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Kimberg V, Sanchez-Gonzalez A, Mercadier L, Weninger C, Lutman A, Ratner D, Coffee R, Bucher M, Mucke M, Agåker M, Såthe C, Bostedt C, Nordgren J, Rubensson JE, Rohringer N. Stimulated X-ray Raman scattering – a critical assessment of the building block of nonlinear X-ray spectroscopy. Faraday Discuss 2016; 194:305-324. [DOI: 10.1039/c6fd00103c] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
With the invention of femtosecond X-ray free-electron lasers (XFELs), studies of light-induced chemical reaction dynamics and structural dynamics reach a new era, allowing for time-resolved X-ray diffraction and spectroscopy. To ultimately probe coherent electron and nuclear dynamics on their natural time and length scales, coherent nonlinear X-ray spectroscopy schemes have been proposed. In this contribution, we want to critically assess the experimental realisation of nonlinear X-ray spectroscopy at current-day XFEL sources, by presenting first experimental attempts to demonstrate stimulated resonant X-ray Raman scattering in molecular gas targets.
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