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For: Ramesh A, Wheeldon I. Guide RNA Design for Genome-Wide CRISPR Screens in Yarrowia lipolytica. Methods Mol Biol 2021;2307:123-137. [PMID: 33847986 DOI: 10.1007/978-1-0716-1414-3_8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Number Cited by Other Article(s)
1
Robertson NR, Lee S, Tafrishi A, Wheeldon I. Advances in CRISPR-enabled genome-wide screens in yeast. FEMS Yeast Res 2025;25:foaf013. [PMID: 40113237 PMCID: PMC11995697 DOI: 10.1093/femsyr/foaf013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 03/12/2025] [Accepted: 03/19/2025] [Indexed: 03/22/2025]  Open
2
Trivedi V, Mohseni A, Lonardi S, Wheeldon I. Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity. ACS Synth Biol 2024;13:3774-3781. [PMID: 39495623 PMCID: PMC11574921 DOI: 10.1021/acssynbio.4c00542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2024]
3
Robertson NR, Trivedi V, Lupish B, Ramesh A, Aguilar Y, Carrera S, Lee S, Arteaga A, Nguyen A, Lenert-Mondou C, Harland-Dunaway M, Jinkerson R, Wheeldon I. Optimized genome-wide CRISPR screening enables rapid engineering of growth-based phenotypes in Yarrowia lipolytica. Metab Eng 2024:S1096-7176(24)00122-8. [PMID: 39278589 DOI: 10.1016/j.ymben.2024.09.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 08/28/2024] [Accepted: 09/12/2024] [Indexed: 09/18/2024]
4
Ramesh A, Lee S, Wheeldon I. Genome Editing, Transcriptional Regulation, and Forward Genetic Screening Using CRISPR-Cas12a Systems in Yarrowia lipolytica. Methods Mol Biol 2024;2760:169-198. [PMID: 38468089 DOI: 10.1007/978-1-0716-3658-9_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
5
Baisya D, Ramesh A, Schwartz C, Lonardi S, Wheeldon I. Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica. Nat Commun 2022;13:922. [PMID: 35177617 PMCID: PMC8854577 DOI: 10.1038/s41467-022-28540-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 02/01/2022] [Indexed: 12/15/2022]  Open
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