Multichannel Data Analysis in Biomedical Research. In: Jirsa VK, Mcintosh A, editors. Handbook of Brain Connectivity. Berlin: Springer Berlin Heidelberg; 2007. pp. 327-55. [DOI: 10.1007/978-3-540-71512-2_11]

A Task-Driven Adversarial Channel Selection Method for Binary Classification Based on Magnetocardiography

As the number of sensors in magnetocardiography (MCG) arrays increases to capture detailed cardiac activity, some channels contribute minimally to task performance, resulting in data redundancy and resource consumption. Although existing methods can reduce the number of channels required to meet task demands, they often struggle to balance computational time and the accuracy of the selected channels and overlook the scalability of the selected channels. This limitation means that when environmental conditions change, or when sensors malfunction, redesigning channel configurations becomes necessary, which increases experimental uncertainties. This study introduces a task-driven adversarial channel selection method tailored for binary classification of MCG signals. The optimal channel combination is determined through a group-wise search using a heuristic algorithm, whose objective function is designed to maximize the difference between the classification accuracy and cosine similarity of the selected channel. In evaluations using an MCG dataset from Qilu Hospital of Shandong University, the proposed method successfully reduced the number of channels from 36 to 5 without compromising classification performance. Furthermore, it outperforms existing hybrid sequential forward search method by achieving comparable accuracy with fewer channels, while also demonstrating superior scalability compared to both hybrid sequential forward search and pearson-rank methods. This approach strikes a balance between computational consumption and accuracy, while improving the scalability of the selected channel combinations, enhancing the efficiency and practicality of the MCG system.

Description length guided nonlinear unified Granger causality analysis

Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam's razor, we present a unified GCA (uGCA) based on the minimum description length principle. In this research, considering the common existence of nonlinearity in functional brain networks, we incorporated the nonlinear modeling procedure into the proposed uGCA method, in which an approximate representation of Taylor's expansion was adopted. Through synthetic data experiments, we revealed that nonlinear uGCA was obviously superior to its linear representation and the conventional GCA. Meanwhile, the nonlinear characteristics of high-order terms and cross-terms would be successively drowned out as noise levels increased. Then, in real fMRI data involving mental arithmetic tasks, we further illustrated that these nonlinear characteristics in fMRI data may indeed be drowned out at a high noise level, and hence a linear causal analysis procedure may be sufficient. Next, involving autism spectrum disorder patients data, compared with conventional GCA, the network property of causal connections obtained by uGCA methods appeared to be more consistent with clinical symptoms.

Time, frequency, and time-varying Granger-causality measures in neuroscience

This article proposes a systematic methodological review and an objective criticism of existing methods enabling the derivation of time, frequency, and time-varying Granger-causality statistics in neuroscience. The capacity to describe the causal links between signals recorded at different brain locations during a neuroscience experiment is indeed of primary interest for neuroscientists, who often have very precise prior hypotheses about the relationships between recorded brain signals. The increasing interest and the huge number of publications related to this topic calls for this systematic review, which describes the very complex methodological aspects underlying the derivation of these statistics. In this article, we first present a general framework that allows us to review and compare Granger-causality statistics in the time domain, and the link with transfer entropy. Then, the spectral and the time-varying extensions are exposed and discussed together with their estimation and distributional properties. Although not the focus of this article, partial and conditional Granger causality, dynamical causal modelling, directed transfer function, directed coherence, partial directed coherence, and their variant are also mentioned.

Predicting effective connectivity from resting-state networks in healthy elderly and patients with prodromal Alzheimer's disease

Using functional neuroimaging techniques two aspects of functional integration in the human brain have been investigated, functional connectivity and effective connectivity. In this study we examined both connectivity types in parallel within an executive attention network during rest and while performing an attention task. We analyzed the predictive value of resting-state functional connectivity on task-induced effective connectivity in patients with prodromal Alzheimer's disease (AD) and healthy elderly. We found that in healthy elderly, functional connectivity was a significant predictor for effective connectivity, however, it was frequency-specific. Effective top-down connectivity emerging from prefrontal areas was related with higher frequencies of functional connectivity (e.g., 0.08-0.15 Hz), in contrast to effective bottom-up connectivity going to prefrontal areas, which was related to lower frequencies of functional connectivity (e.g., 0.001-0.03 Hz). In patients, the prediction of effective connectivity by functional connectivity was disturbed. We conclude that functional connectivity and effective connectivity are interrelated in healthy brains but this relationship is aberrant in very early AD.

Experimental comparison of connectivity measures with simulated EEG signals

Directional connectivity measures exist with different theoretical backgrounds, i.e., information theoretic, parametric-modeling based or phase related. In this paper, we perform the first comparison in this extend of a set of conventional and directed connectivity measures [cross-correlation, coherence, phase slope index (PSI), directed transfer function (DTF), partial-directed coherence (PDC) and transfer entropy (TE)] with eight-node simulation data based on real resting closed eye electroencephalogram (EEG) source signal. The ability of the measures to differentiate the direct causal connections from the non-causal connections was evaluated with the simulated data. Also, the effects of signal-to-noise ratio (SNR) and decimation were explored. All the measures were able to distinguish the direct causal interactions from the non-causal relations. PDC detected less non-causal connections compared to the other measures. Low SNR was tolerated better with DTF and PDC than with the other measures. Decimation affected most the results of TE, DTF and PDC. In conclusion, parametric-modeling-based measures (DTF, PDC) had the highest sensitivity of connections and tolerance to SNR in simulations based on resting closed eye EEG. However, decimation of data has to be carefully considered with these measures.

Application of the directed transfer function method to the study of the propagation of epilepsy neural information

A study of the propagation of electroencephalogram (EEG) activity before seizure by means of the Directed Transfer Function (DTF) is presented. The DTF method is a multi-channel parametric method of analysis based on an autoregressive model, and is capable of supplying such information as the direction, spectra and dynamics of the propagation of EEG signals. This method is typically utilized to determine patterns of neural information flow. In this paper, the DTF method is applied to detect the propagation of EEG signals, and the work is focused on aiding the clinical diagnose for the foci and the propagation pathway of the epilepsy neural information. The work has been efficiently utilized to diagnose complex partial seizures originating from temporal and frontal lobe structures in 10 patients, based on the intracranial recordings. It is concluded that the source of the seizure onset, as well as the neural circuitry, can be found so that the propagation of the epileptic information from the foci to the entire brain can be determined. It is tested that the DTF method may be effective and practical in the clinical diagnose.