Quantum Optics: Colloidal Fluorescent Semiconductor Nanocrystals (Quantum Dots) in Single-Molecule Detection and Imaging. In: Rigler R, Vogel H, editors. Single Molecules and Nanotechnology. Berlin: Springer Berlin Heidelberg; 2008. pp. 53-81. [DOI: 10.1007/978-3-540-73924-1_3]

A contemporary overview on quantum dots-based fluorescent biosensors: Exploring synthesis techniques, sensing mechanism and applications

In the epoch of bioinformatics, pivotal biomedical scrutiny and clinical diagnosis hinge upon the unfolding of highly efficacious biosensors for intricate and targeted identification of specific biomolecules. In pursuit of developing robust biosensors endowed with superior sensitivity, precise selectivity, rapid performance, and operational simplicity, semiconductor QDs have been acknowledged as pivotal and advantageous entities. In this review, we present a comprehensive analysis of the latest unfolding within the domain of QDs used in fluorescent biosensors for the detection of diverse biomolecular entities, encompassing proteins, nucleic acids, and a range of small molecules, with an emphasis on the synthesis methodologies of QDs employed and mechanism behind sensing. Additionally, this review delves into several pivotal facets of QD-based fluorescent biosensors in detail, such as surface functionalization methodologies aimed at enhancing biocompatibility and improving target specificity. The challenges and future perspectives of QD-based fluorescent biosensors are also considered, emphasizing the necessity of ongoing multidisciplinary research to realize their full potential in enhancing personalized medicine and biomedical diagnostics.

Assessing the stochastic intermittency of single quantum dot luminescence for robust quantification of biomolecules

Single molecule detection schemes promise that one has the ability to reach the ultimate limit of detection: one molecule. In this paper, we use the stochastic luminescence of single semiconductor nanocrystals (quantum dots, QDs) to detect and localize particles as digital counts. These digital counts can be correlated to the concentration of analytes in solution. Here, we use total internal reflection fluorescence (TIRF) microscopy to probe individual QDs immobilized on a functionalized substrate. QDs have found their niche in the bioanalytical community due to their remarkable brightness and stability. Despite their numerous outstanding photophysical properties, QDs at the single particle level display a pronounced intermittent luminescence, posing a challenge for the detection of individual particles. In this paper, we demonstrate a reliable method for detecting QDs that takes advantage of these signal fluctuations by comparing the variations in the QD's fluorescence signals against variations of the background signal. The quantitative methodology developed here results in signal-to-background ratios up to 90:1, which is at least 8-times higher than the ratios obtained using methodologies relying solely on signal integration. This enhanced signal-to-background ratio facilitates a robust thresholding process and results in femtomolar limits of detection.

Direct in situ hybridization with oligonucleotide functionalized quantum dot probes

Coming from the material sciences, fluorescent semiconductor nanocrystals, also known as quantum dots (QDs), have emerged as powerful fluorescent probes for a wide range of biological imaging applications. QDs have several advantages over organic dyes which include higher brightness, better resistance to photobleaching, and simplified multicolor target detection. In this chapter, we describe a rapid assay for the direct imaging of multiple repetitive subnuclear genetic sequences using QD-based FISH probes. Streptavidin-coated QDs (SAvQDs) are functionalized with short biotinylated oligonucleotides and used in a single hybridization/detection step. These QD-FISH probes penetrate both intact interphase nuclei and metaphase chromosomes and show good targeting of dense chromatin domains. Importantly, the broad absorption spectra of QDs allows two sequence specific QD-FISH probes of different colors to be simultaneously imaged with a single laser excitation wavelength. This method, which requires minimal custom conjugation, is easily expandable and offers the experimentalist a new alternative to increase flexibility in multicolor cytogenetic FISH applications of repetitive DNAs.