1
|
Patel MZ, Jiang Y, Kakumani PK. Somatic piRNA and PIWI-mediated post-transcriptional gene regulation in stem cells and disease. Front Cell Dev Biol 2024; 12:1495035. [PMID: 39717847 PMCID: PMC11663942 DOI: 10.3389/fcell.2024.1495035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Accepted: 11/25/2024] [Indexed: 12/25/2024] Open
Abstract
PIWI-interacting RNAs (piRNAs) are small non-coding RNAs that bind to the PIWI subclass of the Argonaute protein family and are essential for maintaining germline integrity. Initially discovered in Drosophila, PIWI proteins safeguard piRNAs, forming ribonucleoprotein (RNP) complexes, crucial for regulating gene expression and genome stability, by suppressing transposable elements (TEs). Recent insights revealed that piRNAs and PIWI proteins, known for their roles in germline maintenance, significantly influence mRNA stability, translation and retrotransposon silencing in both stem cells and bodily tissues. In the current review, we explore the multifaceted roles of piRNAs and PIWI proteins in numerous biological contexts, emphasizing their involvement in stem cell maintenance, differentiation, and the development of human diseases. Additionally, we discussed the up-and-coming animal models, beyond the classical fruit fly and earthworm systems, for studying piRNA-PIWIs in self-renewal and cell differentiation. Further, our review offers new insights and discusses the emerging roles of piRNA-dependent and independent functions of PIWI proteins in the soma, especially the mRNA regulation at the post-transcriptional level, governing stem cell characteristics, tumor development, and cardiovascular and neurodegenerative diseases.
Collapse
Affiliation(s)
| | | | - Pavan Kumar Kakumani
- Department of Biochemistry, Memorial University of Newfoundland, St. John’s, NL, Canada
| |
Collapse
|
2
|
Boutry J, Buysse M, Tissot S, Cazevielle C, Hamede R, Dujon AM, Ujvari B, Giraudeau M, Klimovich A, Thomas F, Tökölyi J. Spontaneously occurring tumors in different wild-derived strains of hydra. Sci Rep 2023; 13:7449. [PMID: 37156860 PMCID: PMC10167321 DOI: 10.1038/s41598-023-34656-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 05/04/2023] [Indexed: 05/10/2023] Open
Abstract
Hydras are freshwater cnidarians widely used as a biological model to study different questions such as senescence or phenotypic plasticity but also tumoral development. The spontaneous tumors found in these organisms have been so far described in two female lab strains domesticated years ago (Hydra oligactis and Pelmatohydra robusta) and the extent to which these tumors can be representative of tumors within the diversity of wild hydras is completely unknown. In this study, we examined individuals isolated from recently sampled wild strains of different sex and geographical origin, which have developed outgrowths looking like tumors. These tumefactions have common features with the tumors previously described in lab strains: are composed of an accumulation of abnormal cells, resulting in a similar enlargement of the tissue layers. However, we also found diversity within these new types of tumors. Indeed, not only females, but also males seem prone to form these tumors. Finally, the microbiota associated to these tumors is different from the one involved in the previous lineages exhibiting tumors. We found that tumorous individuals hosted yet undescribed Chlamydiales vacuoles. This study brings new insights into the understanding of tumor susceptibility and diversity in brown hydras from different origins.
Collapse
Affiliation(s)
- Justine Boutry
- CREEC/CANECEV (CREES), MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France.
| | - Marie Buysse
- MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France
| | - Sophie Tissot
- CREEC/CANECEV (CREES), MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France
| | - Chantal Cazevielle
- Institut des Neurosciences de Montpellier: Electronic Microscopy Facilities, INSERM U 1298, Université Montpellier, Montpellier, France
| | - Rodrigo Hamede
- CREEC/CANECEV (CREES), MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC, Australia
| | - Antoine M Dujon
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC, Australia
| | - Beata Ujvari
- CREEC/CANECEV (CREES), MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC, Australia
| | - Mathieu Giraudeau
- Littoral Environnement et Sociétés (LIENSs), UMR 7266 CNRS-La Rochelle Université, 223 Rue Olympe de Gouges, 17000, La Rochelle, France
| | | | - Frédéric Thomas
- CREEC/CANECEV (CREES), MIVEGEC, Unité Mixte de Recherches, IRD 224-CNRS 5290, Université de Montpellier, Montpellier, France
| | - Jácint Tökölyi
- MTA-DE "Momentum" Ecology, Evolution and Developmental Biology Research Group, Department of Evolutionary Zoology, University of Debrecen, Debrecen, 4032, Hungary.
| |
Collapse
|
3
|
Tökölyi J, Gergely R, Miklós M. Seasonal variation in sexual readiness in a facultatively sexual freshwater cnidarian with diapausing eggs. Ecosphere 2021. [DOI: 10.1002/ecs2.3713] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Jácint Tökölyi
- MTA‐DE Behavioral Ecology Research Group Department of Evolutionary Zoology University of Debrecen Egyetem tér 1 Debrecen 4032 Hungary
| | - Réka Gergely
- MTA‐DE Behavioral Ecology Research Group Department of Evolutionary Zoology University of Debrecen Egyetem tér 1 Debrecen 4032 Hungary
| | - Máté Miklós
- MTA‐DE Behavioral Ecology Research Group Department of Evolutionary Zoology University of Debrecen Egyetem tér 1 Debrecen 4032 Hungary
| |
Collapse
|
4
|
Ngo KS, R-Almási B, Barta Z, Tökölyi J. Experimental manipulation of body size alters life history in hydra. Ecol Lett 2021; 24:728-738. [PMID: 33606896 DOI: 10.1111/ele.13698] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 12/18/2020] [Accepted: 01/07/2021] [Indexed: 11/26/2022]
Abstract
Body size has fundamental impacts on animal ecology and physiology but has been strongly influenced by recent climate change and human activities, such as size-selective harvesting. Understanding the ecological and life history consequences of body size has proved difficult due to the inseparability of direct effects of body size from processes connected to it (such as growth rate and individual condition). Here, we used the cnidarian Hydra oligactis to directly manipulate body size and understand its causal effects on reproduction and senescence. We found that experimentally reducing size delayed sexual development and lowered fecundity, while post-reproductive survival increased, implying that smaller individuals can physiologically detect their reduced size and adjust life history decisions to achieve higher survival. Our experiment suggests that ecological or human-induced changes in body size will have immediate effects on life history and population dynamics through a growth-independent link between body size, reproduction and senescence.
Collapse
Affiliation(s)
- Kha Sach Ngo
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, Univ. of Debrecen, Debrecen, Hungary
| | - Berta R-Almási
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, Univ. of Debrecen, Debrecen, Hungary
| | - Zoltán Barta
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, Univ. of Debrecen, Debrecen, Hungary
| | - Jácint Tökölyi
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, Univ. of Debrecen, Debrecen, Hungary
| |
Collapse
|
5
|
Miklós M, Laczkó L, Sramkó G, Sebestyén F, Barta Z, Tökölyi J. Phenotypic plasticity rather than genotype drives reproductive choices in Hydra populations. Mol Ecol 2021; 30:1206-1222. [PMID: 33465828 DOI: 10.1111/mec.15810] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 12/23/2020] [Accepted: 01/08/2021] [Indexed: 12/16/2022]
Abstract
Facultative clonality is associated with complex life cycles where sexual and asexual forms can be exposed to contrasting selection pressures. Facultatively clonal animals often have distinct developmental capabilities that depend on reproductive mode (e.g., negligible senescence and exceptional regeneration ability in asexual individuals, which are lacking in sexual individuals). Understanding how these differences in life history strategies evolved is hampered by limited knowledge of the population structure underlying sexual and asexual forms in nature. Here we studied genetic differentiation of coexisting sexual and asexual Hydra oligactis polyps, a freshwater cnidarian where reproductive mode-dependent life history patterns are observed. We collected asexual and sexual polyps from 13 Central European water bodies and used restriction-site associated DNA sequencing to infer population structure. We detected high relatedness among populations and signs that hydras might spread with resting eggs through zoochory. We found no genetic structure with respect to mode of reproduction (asexual vs. sexual). On the other hand, clear evidence was found for phenotypic plasticity in mode of reproduction, as polyps inferred to be clones differed in reproductive mode. Moreover, we detected two cases of apparent sex change (males and females found within the same clonal lineages) in this species with supposedly stable sexes. Our study describes population genetic structure in Hydra for the first time, highlights the role of phenotypic plasticity in generating patterns of life history variation, and contributes to understanding the evolution of reproductive mode-dependent life history variation in coexisting asexual and sexual forms.
Collapse
Affiliation(s)
- Máté Miklós
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, University of Debrecen, Debrecen, Hungary.,Juhász-Nagy Pál Doctoral School of Biology and Environmental Sciences, University of Debrecen, Debrecen, Hungary
| | - Levente Laczkó
- Juhász-Nagy Pál Doctoral School of Biology and Environmental Sciences, University of Debrecen, Debrecen, Hungary.,MTA-DE "Lendület" Evolutionary Phylogenomics Research Group, Debrecen, Hungary.,Department of Botany, University of Debrecen, Debrecen, Hungary
| | - Gábor Sramkó
- MTA-DE "Lendület" Evolutionary Phylogenomics Research Group, Debrecen, Hungary.,Department of Botany, University of Debrecen, Debrecen, Hungary
| | - Flóra Sebestyén
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, University of Debrecen, Debrecen, Hungary.,Juhász-Nagy Pál Doctoral School of Biology and Environmental Sciences, University of Debrecen, Debrecen, Hungary
| | - Zoltán Barta
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, University of Debrecen, Debrecen, Hungary
| | - Jácint Tökölyi
- MTA-DE Behavioral Ecology Research Group, Department of Evolutionary Zoology, University of Debrecen, Debrecen, Hungary
| |
Collapse
|