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Hodneland E, Hanson E, Sævareid O, Nævdal G, Lundervold A, Šoltészová V, Munthe-Kaas AZ, Deistung A, Reichenbach JR, Nordbotten JM. A new framework for assessing subject-specific whole brain circulation and perfusion using MRI-based measurements and a multi-scale continuous flow model. PLoS Comput Biol 2019; 15:e1007073. [PMID: 31237876 PMCID: PMC6613711 DOI: 10.1371/journal.pcbi.1007073] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 07/08/2019] [Accepted: 05/07/2019] [Indexed: 11/18/2022] Open
Abstract
A large variety of severe medical conditions involve alterations in microvascular circulation. Hence, measurements or simulation of circulation and perfusion has considerable clinical value and can be used for diagnostics, evaluation of treatment efficacy, and for surgical planning. However, the accuracy of traditional tracer kinetic one-compartment models is limited due to scale dependency. As a remedy, we propose a scale invariant mathematical framework for simulating whole brain perfusion. The suggested framework is based on a segmentation of anatomical geometry down to imaging voxel resolution. Large vessels in the arterial and venous network are identified from time-of-flight (ToF) and quantitative susceptibility mapping (QSM). Macro-scale flow in the large-vessel-network is accurately modelled using the Hagen-Poiseuille equation, whereas capillary flow is treated as two-compartment porous media flow. Macro-scale flow is coupled with micro-scale flow by a spatially distributing support function in the terminal endings. Perfusion is defined as the transition of fluid from the arterial to the venous compartment. We demonstrate a whole brain simulation of tracer propagation on a realistic geometric model of the human brain, where the model comprises distinct areas of grey and white matter, as well as large vessels in the arterial and venous vascular network. Our proposed framework is an accurate and viable alternative to traditional compartment models, with high relevance for simulation of brain perfusion and also for restoration of field parameters in clinical brain perfusion applications.
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Affiliation(s)
- Erlend Hodneland
- Norwegian Research Centre, Bergen, Norway
- Mohn Medical Imaging and Visualization Centre, Department of Radiology, Haukeland Universitetssykehus, Bergen, Norway
| | - Erik Hanson
- Department of Mathematics, University of Bergen, Bergen, Norway
| | | | | | - Arvid Lundervold
- Mohn Medical Imaging and Visualization Centre, Department of Radiology, Haukeland Universitetssykehus, Bergen, Norway
- Department of Biomedicine, University of Bergen, Bergen, Norway
| | | | - Antonella Z. Munthe-Kaas
- Mohn Medical Imaging and Visualization Centre, Department of Radiology, Haukeland Universitetssykehus, Bergen, Norway
- Department of Mathematics, University of Bergen, Bergen, Norway
| | - Andreas Deistung
- Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital - Friedrich Schiller University Jena, Germany
- Department of Neurology, Essen University Hospital, Essen, Germany
| | - Jürgen R. Reichenbach
- Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital - Friedrich Schiller University Jena, Germany
- Michael Stifel Center Jena for Data-driven and Simulation Science, Friedrich Schiller University, Jena, Germany
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Blanco PJ, Leiva JS, Buscaglia GC. A black-box decomposition approach for coupling heterogeneous components in hemodynamics simulations. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2013; 29:408-427. [PMID: 23345261 DOI: 10.1002/cnm.2519] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2012] [Revised: 08/16/2012] [Accepted: 09/15/2012] [Indexed: 06/01/2023]
Abstract
This work presents a generic and efficient black-box approach for the strong iterative coupling of dimensionally heterogeneous flow models in computational hemodynamics. A heterogeneous model of the cardiovascular system is formed by several vascular black-box components, which are connected through coupling equations. The associated system of equations is solved using the Broyden algorithm. In addition, a multiple time-stepping strategy is introduced to meet different component requirements. The proposed algorithm is employed to split a 3D-1D-0D closed-loop model of the cardiovascular system into corresponding black-box components standing for the 3D (specific vessels), 1D (systemic arteries/peripheral vessels), and 0D (venous/cardiac/pulmonary circulation) components. Examples of application are presented showing the robustness and suitability of this novel approach.
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Affiliation(s)
- Pablo J Blanco
- Laboratório Nacional de Computação Científica, Av. Getúlio Vargas 333, Quitandinha, 25651-075 Petrópolis, Brazil.
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