Multifarious Responses of Forest Soil Microbial Community Toward Climate Change

Soil-dependent responses of bacterial communities, phosphorus and carbon turnover to uranium stress in different soil ecosystems

Uranium (U) can impact microbially driven soil phosphorus (P) and carbon (C) cycling. However, the response of microbial P and C turnover to U in different soils is not well understood. Through the quantitative assay of P pools and soil organic C (SOC) quantitative assay and sequencing of 16S rRNA gene amplicons and metagenomes, we investigated the effect of U on P and C biotransformation in grassland (GL), paddy soil (PY), forest soil (FT). U (60 mg kg-1) impacted the diversity, interaction and stability of soil bacterial communities, leading to a decrease in available P (AP). Under U stress, organophosphate mineralization substantially contributed to the AP in GL and FT, whereas intracellular P metabolism dominated the AP in PY. Also, the reductive citrate cycle (rTCA cycle) promoted the content of SOC in GL, while the rTCA cycle and complex organic C degradation pathways enhanced the SOC in PY and FT, respectively. Notably, functional bacteria carrying organic C degradation genes could decompose SOC to enhance soil AP. Bacteria developed various resistance strategies to cope with U stress. This study reveals soil-dependent response of microbial P and C cycling and its ecological functions under the influence of radioactive contaminants in different soil systems.

Impacts of Land Use on Soil Nitrogen-Cycling Microbial Communities: Insights from Community Structure, Functional Gene Abundance, and Network Complexity

This study investigates the effects of different land-use types (forest, arable land, and wetland) on key soil properties, microbial communities, and nitrogen cycling in the Lesser Khingan Mountains. The results revealed that forest (FL) and wetland (WL) soils had significantly higher soil organic matter (SOM) content compared with arable land (AL), with total phosphorus (TP) being highest in FL and available nitrogen (AN) significantly higher in WL. In terms of enzyme activity, AL and WL showed reduced activities of ammonia monooxygenase (AMO), β-D-glucosidase (β-G), and β-cellobiosidase (CBH), while exhibiting increased N-acetyl-β-D-glucosaminidase (NAG) activity, highlighting the impact of land use on nitrogen dynamics. WL also exhibited significantly higher microbial diversity and evenness compared with FL and AL. The dominant bacterial phyla included Actinobacteriota, Proteobacteria, and Acidobacteriota, with Acidobacteriota being most abundant in FL and Proteobacteria most abundant in WL. Network analysis showed that AL had the most complex and connected microbial network, while FL and WL had simpler but more stable networks, suggesting the influence of land use on microbial community interactions. Regarding nitrogen cycling genes, AOA-amoA was most abundant in AL, while AOB-amoA was significantly enriched in FL, reflecting the influence of land use on ammonia oxidation. These findings highlight how land-use types significantly affect soil properties, microbial community structures, and nitrogen cycling, offering valuable insights for sustainable land management.

Exploring the Rhizospheric Microbial Communities under Long-Term Precipitation Regime in Norway Spruce Seed Orchard

The rhizosphere is the hotspot for microbial enzyme activities and contributes to carbon cycling. Precipitation is an important component of global climate change that can profoundly alter belowground microbial communities. However, the impact of precipitation on conifer rhizospheric microbial populations has not been investigated in detail. In the present study, using high-throughput amplicon sequencing, we investigated the impact of precipitation on the rhizospheric soil microbial communities in two Norway Spruce clonal seed orchards, Lipová Lhota (L-site) and Prenet (P-site). P-site has received nearly double the precipitation than L-site for the last three decades. P-site documented higher soil water content with a significantly higher abundance of Aluminium (Al), Iron (Fe), Phosphorous (P), and Sulphur (S) than L-site. Rhizospheric soil metabolite profiling revealed an increased abundance of acids, carbohydrates, fatty acids, and alcohols in P-site. There was variance in the relative abundance of distinct microbiomes between the sites. A higher abundance of Proteobacteria, Acidobacteriota, Ascomycota, and Mortiellomycota was observed in P-site receiving high precipitation, while Bacteroidota, Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadota, and Basidiomycota were prevalent in L-site. The higher clustering coefficient of the microbial network in P-site suggested that the microbial community structure is highly interconnected and tends to cluster closely. The current study unveils the impact of precipitation variations on the spruce rhizospheric microbial association and opens new avenues for understanding the impact of global change on conifer rizospheric microbial associations.

Effects of forest age and season on soil microbial communities in Chinese fir plantations

Understanding changes in the distribution patterns and diversity of soil microbial communities from the perspectives of age-related changes, seasonal variations, and the interaction between the two factors can facilitate the management of plantations. In Chinese fir plantations, we collected soils from different depths in over-mature forests, mature forests, near-mature forests, middle-aged forests, and young forests in summer, autumn, and winter in China's subtropical regions. As the forests developed, bacterial and fungal communities' diversity changed, reached a minimum value at near-mature forests, and then increased in mature forests or over-mature forests. Near-mature forests had the lowest topological properties. The Shannon index of microbial communities varied with seasonal changes (P < 0.05). Bacterial and fungal community composition at genus level was more closely related to temperature indicators (including daily average temperature, daily maximum temperature, and daily minimum temperature) (P < 0.01, 0.5554 < R2 <0.8185) than daily average precipitation (P > 0.05, 0.0321 < R2 <0.6773). Bacteria were clustered by season and fungi were clustered by forest age. We suggested that extending the tree cultivation time of plantations could promote microbial community recovery. In addition, we found some species worthy of attention, including Bacteroidetes in autumn in over-mature forests, and Firmicutes in summer in young forests.IMPORTANCEChinese fir [Cunninghamia lanceolata (Lamb.) Hook] is an important fast-growing species with the largest artificial forest area in China, with the outstanding problems of low quality in soil. Soil microorganisms play a crucial role in soil fertility by decomposing organic matter, optimizing soil structure, and releasing essential nutrients for plant growth. In order to maintain healthy soil quality and prevent nutrient depletion and land degradation, it is crucial to understand the changes of soil microbial composition and diversity. Our study determined to reveal the change of soil microbial community from stand age, season, and the interaction between the two aspects, which is helpful to understand how interannual changes in different years and seasonal changes in one year affect soil fertility restoration and sustainable forest plantation management. It is a meaningful exploration of soil microbial communities and provides new information for further research.

Spatial distribution characteristics and pollution evaluation of soil heavy metals in Wulongdong National Forest Park

To scrutinize the spatial distribution attributes of soil heavy metal content and discern its pollution status within the expanse of Wulongdong National Forest Park, a meticulous investigation is imperative. Three altitude gradients of 900, 1000, and 1069 m were selected on the shady and sunny slopes of Wulongdong National Forest Park, and a total of 300 soil sample points were collected. Soil samples were collected in layers, and the contents of seven soil heavy metal elements, Cr, Cd, Hg, Ni, Se, As, and Pb, were measured. With regard to the national soil element background values, the single factor index method, Nemerow index method, and pollution load index were employed to undertake a thorough assessment of soil heavy metal pollution. (1) The contents of heavy metal elements Cr, Se, As, and Pb in the 0-20 cm soil layer of Wulongdong National Forest Park are lower than the national soil element background value and the Henan soil element background value; the Cd and Hg contents exceed the national soil element background value. The value and Henan soil element background value are 2.2 times and 2.92 times the national soil element background value, and 2.75 times and 9.5 times the Henan soil element background value respectively; Ni content is lower than the Henan soil element background value, but higher than the national soil element background value. The background value is 1.03 times its content. The coefficients of variation of the contents of seven heavy metal elements are all greater than 50%, among which Hg shows extreme variation, and the remaining six are highly variable. (2) In the same soil layer, the Cr and As contents are lower on sunny slopes than on shady slopes, and the contents of Pb, Ni, and Hg are generally higher on sunny slopes than on shady slopes. On sunny slopes, the contents of As, Cd, and Hg decrease with increasing altitude, and the Se content increases with increasing altitude; while on shady slopes, the contents of Cr, Se, and As decrease with increasing altitude, and Pb and Hg content increase with the increase of altitude; the content of heavy metal element As increases with the deepening of the soil layer on shady slopes, and the Hg content decreases with the deepening of the soil layer on sunny slopes. The contents of other heavy metal elements have no obvious regularity among different slope directions, altitudes and soil layers. (3) The single factor index evaluation results show that in the 0 ~ 20c soil layer and on the sunny slope, Hg is heavily polluted, Cd is moderately polluted, Ni is lightly polluted, and Cr, Se, As, and Pb are all non-polluted; On the shady slope, Cd and Hg are moderately polluted, and the other five heavy metal elements are in a non-polluting state. (4) The Nemerow index method evaluation results show that in the 0 ~ 20 cm soil layer, the soil on sunny slopes is significantly more polluted by heavy metals than on shady slopes, and the main pollutants are Ni, Cd and Hg. (5) In the 0 ~ 20 cm soil layer of Wulongdong National Forest Park, the three heavy metal elements Ni, Cd and Hg have reached pollution levels, of which Ni is slightly polluted, Cd and Hg are moderately or above polluted; the sunny slope soil is slightly polluted. Heavy metal pollution, no heavy metal pollution on shady slopes.

How does global warming contribute to disorders originating from an impaired epithelial barrier?

The epithelial barrier represents the point of contact between the host and the external environment. It is the first line of defense against external insults in the skin and in the gastrointestinal and upper and lower respiratory tracts. The steep increase in chronic disorders in recent decades, including allergies and autoimmune disorders, has prompted studies to investigate the immune mechanisms of their underlying pathogeneses, all of which point to a thought-provoking shared finding: disrupted epithelial barriers. Climate change with global warming has increased the frequency of unpredictable extreme weather events, such as wildfires, droughts, floods, and aberrant and longer pollination seasons, among many others. These increasingly frequent natural disasters can synergistically damage the epithelial barrier integrity in the presence of environmental pollution. A disrupted epithelial barrier induces proinflammatory activation of epithelial cells and alarmin production, namely, epithelitis. The "opened" epithelial barrier facilitates the entry of the external exposome into and underneath the epithelium, triggering an expulsion response driven by inflammatory cells in the area and chronic inflammation. These changes are associated with microbial dysbiosis with colonizing opportunistic pathogens and decreased commensals. These cellular and molecular events are key mechanisms in the pathogenesis of numerous chronic inflammatory disorders. This review summarizes the impact of global warming on epithelial barrier functions in the context of allergic diseases. Further studies in the impact of climate change on the dysfunction of the epithelial barriers are warranted to improve our understanding of epithelial barrier-related diseases and raise awareness of the environmental insults that pose a threat to our health.

The rapid emergence of antifungal-resistant human-pathogenic fungi

During recent decades, the emergence of pathogenic fungi has posed an increasing public health threat, particularly given the limited number of antifungal drugs available to treat invasive infections. In this Review, we discuss the global emergence and spread of three emerging antifungal-resistant fungi: Candida auris, driven by global health-care transmission and possibly facilitated by climate change; azole-resistant Aspergillus fumigatus, driven by the selection facilitated by azole fungicide use in agricultural and other settings; and Trichophyton indotineae, driven by the under-regulated use of over-the-counter high-potency corticosteroid-containing antifungal creams. The diversity of the fungi themselves and the drivers of their emergence make it clear that we cannot predict what might emerge next. Therefore, vigilance is critical to monitoring fungal emergence, as well as the rise in overall antifungal resistance.

Fine root decomposition in forest ecosystems: an ecological perspective

Fine root decomposition is a physio-biochemical activity that is critical to the global carbon cycle (C) in forest ecosystems. It is crucial to investigate the mechanisms and factors that control fine root decomposition in forest ecosystems to understand their system-level carbon balance. This process can be influenced by several abiotic (e.g., mean annual temperature, mean annual precipitation, site elevation, stand age, salinity, soil pH) and biotic (e.g., microorganism, substrate quality) variables. Comparing decomposition rates within sites reveals positive impacts of nitrogen and phosphorus concentrations and negative effects of lignin concentration. Nevertheless, estimating the actual fine root breakdown is difficult due to inadequate methods, anthropogenic activities, and the impact of climate change. Herein, we propose that how fine root substrate and soil physiochemical characteristics interact with soil microorganisms to influence fine root decomposition. This review summarized the elements that influence this process, as well as the research methods used to investigate it. There is also need to study the influence of annual and seasonal changes affecting fine root decomposition. This cumulative evidence will provide information on temporal and spatial dynamics of forest ecosystems, and will determine how logging and reforestation affect fine root decomposition.