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For: Rival A, Ilbert P, Labeyrie A, Torres E, Doulbeau S, Personne A, Dussert S, Beulé T, Durand-Gasselin T, Tregear JW, Jaligot E. Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Plant Cell Rep 2013;32:359-368. [PMID: 23179461 DOI: 10.1007/s00299-012-1369-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Revised: 09/03/2012] [Accepted: 11/06/2012] [Indexed: 05/24/2023]
Number Cited by Other Article(s)
1
Manchanda P, Sharma D, Kaur G, Kaur H, Vanshika. Exploring the Significance of Somaclonal Variations in Horticultural Crops. Mol Biotechnol 2025;67:2185-2203. [PMID: 38896180 DOI: 10.1007/s12033-024-01214-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 06/02/2024] [Indexed: 06/21/2024]
2
Carlsen FM, Westberg I, Johansen IE, Andreasson E, Petersen BL. Strategies and Protocols for Optimized Genome Editing in Potato. CRISPR J 2025;8:37-50. [PMID: 39628447 DOI: 10.1089/crispr.2024.0068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2025]  Open
3
Boissinot J, Adamek K, Jones AMP, Normandeau E, Boyle B, Torkamaneh D. Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population. FRONTIERS IN PLANT SCIENCE 2024;15:1381154. [PMID: 38872884 PMCID: PMC11169872 DOI: 10.3389/fpls.2024.1381154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 05/14/2024] [Indexed: 06/15/2024]
4
Zhang W, Zhang H, Zhao G, Wang N, Guo L, Hou X. Molecular mechanism of somatic embryogenesis in paeonia ostii 'Fengdan' based on transcriptome analysis combined histomorphological observation and metabolite determination. BMC Genomics 2023;24:665. [PMID: 37924006 PMCID: PMC10625268 DOI: 10.1186/s12864-023-09730-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 10/11/2023] [Indexed: 11/06/2023]  Open
5
Liu P, Liu R, Xu Y, Zhang C, Niu Q, Lang Z. DNA cytosine methylation dynamics and functional roles in horticultural crops. HORTICULTURE RESEARCH 2023;10:uhad170. [PMID: 38025976 PMCID: PMC10660380 DOI: 10.1093/hr/uhad170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 08/20/2023] [Indexed: 12/01/2023]
6
Effect of Explant Source on Phenotypic Changes of In Vitro Grown Cannabis Plantlets over Multiple Subcultures. BIOLOGY 2023;12:biology12030443. [PMID: 36979133 PMCID: PMC10044989 DOI: 10.3390/biology12030443] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/06/2023] [Accepted: 03/12/2023] [Indexed: 03/17/2023]
7
Sivanesan I, Nayeem S, Venkidasamy B, Kuppuraj SP, RN C, Samynathan R. Genetic and epigenetic modes of the regulation of somatic embryogenesis: a review. Biol Futur 2022;73:259-277. [DOI: 10.1007/s42977-022-00126-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 06/16/2022] [Indexed: 01/17/2023]
8
John Martin JJ, Yarra R, Wei L, Cao H. Oil Palm Breeding in the Modern Era: Challenges and Opportunities. PLANTS 2022;11:plants11111395. [PMID: 35684168 PMCID: PMC9183044 DOI: 10.3390/plants11111395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Revised: 05/15/2022] [Accepted: 05/19/2022] [Indexed: 11/30/2022]
9
Xiao L, Lu L, Zeng W, Shang X, Cao S, Yan H. DNA Methylome and LncRNAome Analysis Provide Insights Into Mechanisms of Genome-Dosage Effects in Autotetraploid Cassava. FRONTIERS IN PLANT SCIENCE 2022;13:915056. [PMID: 35860527 PMCID: PMC9289687 DOI: 10.3389/fpls.2022.915056] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 06/02/2022] [Indexed: 05/16/2023]
10
Zhang Z, Liu J, Sun Y, Wang S, Xing X, Feng X, Pérez-Pérez JM, Li Y. Genome-wide high-resolution mapping of DNA methylation reveals epigenetic variation in the offspring of sexual and asexual propagation in Robinia pseudoacacia. PLANT CELL REPORTS 2021;40:2435-2447. [PMID: 34524479 DOI: 10.1007/s00299-021-02787-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Accepted: 09/07/2021] [Indexed: 06/13/2023]
11
Lizamore D, Bicknell R, Winefield C. Elevated transcription of transposable elements is accompanied by het-siRNA-driven de novo DNA methylation in grapevine embryogenic callus. BMC Genomics 2021;22:676. [PMID: 34544372 PMCID: PMC8454084 DOI: 10.1186/s12864-021-07973-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 09/03/2021] [Indexed: 11/10/2022]  Open
12
Comparative Study of the Genetic and Biochemical Variability of Polyscias filicifolia (Araliaceae) Regenerants Obtained by Indirect and Direct Somatic Embryogenesis as a Source of Triterpenes. Int J Mol Sci 2021;22:ijms22115752. [PMID: 34072251 PMCID: PMC8198449 DOI: 10.3390/ijms22115752] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 05/18/2021] [Accepted: 05/26/2021] [Indexed: 12/15/2022]  Open
13
Orłowska R. Barley somatic embryogenesis-an attempt to modify variation induced in tissue culture. ACTA ACUST UNITED AC 2021;28:9. [PMID: 33726856 PMCID: PMC7962293 DOI: 10.1186/s40709-021-00138-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 02/19/2021] [Indexed: 11/25/2022]
14
Grzybkowska D, Nowak K, Gaj MD. Hypermethylation of Auxin-Responsive Motifs in the Promoters of the Transcription Factor Genes Accompanies the Somatic Embryogenesis Induction in Arabidopsis. Int J Mol Sci 2020;21:E6849. [PMID: 32961931 PMCID: PMC7555384 DOI: 10.3390/ijms21186849] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 09/09/2020] [Accepted: 09/16/2020] [Indexed: 12/17/2022]  Open
15
Wilms H, Fanega Sleziak N, Van der Auweraer M, Brands M, Verleije M, Hardeman D, Andre E, Panis B. Development of a fast and user-friendly cryopreservation protocol for sweet potato genetic resources. Sci Rep 2020;10:14674. [PMID: 32895398 PMCID: PMC7477159 DOI: 10.1038/s41598-020-70869-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 07/13/2020] [Indexed: 11/10/2022]  Open
16
Time of In Vitro Anther Culture May Moderate Action of Copper and Silver Ions that Affect the Relationship between DNA Methylation Change and the Yield of Barley Green Regenerants. PLANTS 2020;9:plants9091064. [PMID: 32825181 PMCID: PMC7570150 DOI: 10.3390/plants9091064] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 08/10/2020] [Accepted: 08/17/2020] [Indexed: 12/18/2022]
17
Dittami SM, Corre E, Brillet-Guéguen L, Lipinska AP, Pontoizeau N, Aite M, Avia K, Caron C, Cho CH, Collén J, Cormier A, Delage L, Doubleau S, Frioux C, Gobet A, González-Navarrete I, Groisillier A, Hervé C, Jollivet D, KleinJan H, Leblanc C, Liu X, Marie D, Markov GV, Minoche AE, Monsoor M, Pericard P, Perrineau MM, Peters AF, Siegel A, Siméon A, Trottier C, Yoon HS, Himmelbauer H, Boyen C, Tonon T. The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga. Mar Genomics 2020;52:100740. [PMID: 31937506 DOI: 10.1016/j.margen.2020.100740] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 01/01/2020] [Indexed: 11/20/2022]
18
Bidabadi SS, Jain SM. Cellular, Molecular, and Physiological Aspects of In Vitro Plant Regeneration. PLANTS (BASEL, SWITZERLAND) 2020;9:E702. [PMID: 32492786 PMCID: PMC7356144 DOI: 10.3390/plants9060702] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Revised: 05/25/2020] [Accepted: 05/27/2020] [Indexed: 02/07/2023]
19
Orłowska R, Pachota KA, Machczyńska J, Niedziela A, Makowska K, Zimny J, Bednarek PT. Improvement of anther cultures conditions using the Taguchi method in three cereal crops. ELECTRON J BIOTECHN 2020. [DOI: 10.1016/j.ejbt.2019.11.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
20
Sugimoto K, Temman H, Kadokura S, Matsunaga S. To regenerate or not to regenerate: factors that drive plant regeneration. CURRENT OPINION IN PLANT BIOLOGY 2019;47:138-150. [PMID: 30703741 DOI: 10.1016/j.pbi.2018.12.002] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 12/19/2018] [Accepted: 12/21/2018] [Indexed: 05/23/2023]
21
Weckx S, Inzé D, Maene L. Tissue Culture of Oil Palm: Finding the Balance Between Mass Propagation and Somaclonal Variation. FRONTIERS IN PLANT SCIENCE 2019;10:722. [PMID: 31214232 PMCID: PMC6558080 DOI: 10.3389/fpls.2019.00722] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 05/16/2019] [Indexed: 05/08/2023]
22
Osorio-Montalvo P, Sáenz-Carbonell L, De-la-Peña C. 5-Azacytidine: A Promoter of Epigenetic Changes in the Quest to Improve Plant Somatic Embryogenesis. Int J Mol Sci 2018;19:E3182. [PMID: 30332727 PMCID: PMC6214027 DOI: 10.3390/ijms19103182] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 10/09/2018] [Accepted: 10/10/2018] [Indexed: 02/06/2023]  Open
23
Yan H, Bombarely A, Xu B, Frazier TP, Wang C, Chen P, Chen J, Hasing T, Cui C, Zhang X, Zhao B, Huang L. siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass. BIOTECHNOLOGY FOR BIOFUELS 2018;11:208. [PMID: 30061930 PMCID: PMC6058383 DOI: 10.1186/s13068-018-1202-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 07/10/2018] [Indexed: 05/14/2023]
24
Loyola-Vargas VM, Ochoa-Alejo N. An Introduction to Plant Tissue Culture: Advances and Perspectives. Methods Mol Biol 2018;1815:3-13. [PMID: 29981111 DOI: 10.1007/978-1-4939-8594-4_1] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
25
Duarte-Aké F, Castillo-Castro E, Pool FB, Espadas F, Santamaría JM, Robert ML, De-la-Peña C. Physiological differences and changes in global DNA methylation levels in Agave angustifolia Haw. albino variant somaclones during the micropropagation process. PLANT CELL REPORTS 2016;35:2489-2502. [PMID: 27590059 DOI: 10.1007/s00299-016-2049-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2016] [Accepted: 08/27/2016] [Indexed: 06/06/2023]
26
Krishna H, Alizadeh M, Singh D, Singh U, Chauhan N, Eftekhari M, Sadh RK. Somaclonal variations and their applications in horticultural crops improvement. 3 Biotech 2016;6:54. [PMID: 28330124 PMCID: PMC4752953 DOI: 10.1007/s13205-016-0389-7] [Citation(s) in RCA: 103] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2015] [Accepted: 10/20/2015] [Indexed: 01/07/2023]  Open
27
Dubrovina AS, Kiselev KV. Age-associated alterations in the somatic mutation and DNA methylation levels in plants. PLANT BIOLOGY (STUTTGART, GERMANY) 2016;18:185-196. [PMID: 26211365 DOI: 10.1111/plb.12375] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Accepted: 07/21/2015] [Indexed: 05/18/2023]
28
Jiang J, Wang Y, Xie T, Shi X, Wang YP, Sokolov V. DNA methylation analysis during the optimization of Agrobacterium-mediated transformation of soybean. RUSS J GENET+ 2016. [DOI: 10.1134/s1022795416010087] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
29
Gimenez MD, Yañez-Santos AM, Paz RC, Quiroga MP, Marfil CF, Conci VC, García-Lampasona SC. Assessment of genetic and epigenetic changes in virus-free garlic (Allium sativum L.) plants obtained by meristem culture followed by in vitro propagation. PLANT CELL REPORTS 2016;35:129-41. [PMID: 26466594 DOI: 10.1007/s00299-015-1874-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Revised: 08/14/2015] [Accepted: 09/25/2015] [Indexed: 05/05/2023]
30
Rathore MS, Jha B. DNA Methylation and Methylation Polymorphism in Genetically Stable In vitro Regenerates of Jatropha curcas L. Using Methylation-Sensitive AFLP Markers. Appl Biochem Biotechnol 2015;178:1002-14. [PMID: 26588922 DOI: 10.1007/s12010-015-1924-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Accepted: 11/09/2015] [Indexed: 11/27/2022]
31
Barraza A, Cabrera-Ponce JL, Gamboa-Becerra R, Luna-Martínez F, Winkler R, Álvarez-Venegas R. The Phaseolus vulgaris PvTRX1h gene regulates plant hormone biosynthesis in embryogenic callus from common bean. FRONTIERS IN PLANT SCIENCE 2015;6:577. [PMID: 26284093 PMCID: PMC4516878 DOI: 10.3389/fpls.2015.00577] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 07/13/2015] [Indexed: 05/25/2023]
32
Yang X, Li J, Chen L, Louzada ES, He J, Yu W. Stable mitotic inheritance of rice minichromosomes in cell suspension cultures. PLANT CELL REPORTS 2015;34:929-41. [PMID: 25640468 DOI: 10.1007/s00299-015-1755-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 01/09/2015] [Accepted: 01/21/2015] [Indexed: 05/17/2023]
33
Barra-Jiménez A, Aronen TS, Alegre J, Toribio M. Cryopreservation of embryogenic tissues from mature holm oak trees. Cryobiology 2015;70:217-25. [PMID: 25748175 DOI: 10.1016/j.cryobiol.2015.02.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Revised: 01/08/2015] [Accepted: 02/22/2015] [Indexed: 10/23/2022]
34
Zhang M, Dong Y, Nie L, Lu M, Fu C, Yu L. High-throughput sequencing reveals miRNA effects on the primary and secondary production properties in long-term subcultured Taxus cells. FRONTIERS IN PLANT SCIENCE 2015;6:604. [PMID: 26300901 PMCID: PMC4527571 DOI: 10.3389/fpls.2015.00604] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 07/22/2015] [Indexed: 05/23/2023]
35
Ma Q, Zhou W, Zhang P. Transition from somatic embryo to friable embryogenic callus in cassava: dynamic changes in cellular structure, physiological status, and gene expression profiles. FRONTIERS IN PLANT SCIENCE 2015;6:824. [PMID: 26500668 PMCID: PMC4594424 DOI: 10.3389/fpls.2015.00824] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 09/22/2015] [Indexed: 05/20/2023]
36
Gao Y, Ran L, Kong Y, Jiang J, Sokolov V, Wang Y. Assessment of DNA methylation changes in tissue culture of Brassica napus. RUSS J GENET+ 2014. [DOI: 10.1134/s1022795414100032] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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