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Divakar PK, Crespo A, Wedin M, Leavitt SD, Hawksworth DL, Myllys L, McCune B, Randlane T, Bjerke JW, Ohmura Y, Schmitt I, Boluda CG, Alors D, Roca-Valiente B, Del-Prado R, Ruibal C, Buaruang K, Núñez-Zapata J, Amo de Paz G, Rico VJ, Molina MC, Elix JA, Esslinger TL, Tronstad IKK, Lindgren H, Ertz D, Gueidan C, Saag L, Mark K, Singh G, Dal Grande F, Parnmen S, Beck A, Benatti MN, Blanchon D, Candan M, Clerc P, Goward T, Grube M, Hodkinson BP, Hur JS, Kantvilas G, Kirika PM, Lendemer J, Mattsson JE, Messuti MI, Miadlikowska J, Nelsen M, Ohlson JI, Pérez-Ortega S, Saag A, Sipman HJM, Sohrabi M, Thell A, Thor G, Truong C, Yahr R, Upreti DK, Cubas P, Lumbsch HT. Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi. THE NEW PHYTOLOGIST 2015; 208:1217-1226. [PMID: 26299211 DOI: 10.1111/nph.13553] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Accepted: 06/09/2015] [Indexed: 06/04/2023]
Abstract
We studied the evolutionary history of the Parmeliaceae (Lecanoromycetes, Ascomycota), one of the largest families of lichen-forming fungi with complex and variable morphologies, also including several lichenicolous fungi. We assembled a six-locus data set including nuclear, mitochondrial and low-copy protein-coding genes from 293 operational taxonomic units (OTUs). The lichenicolous lifestyle originated independently three times in lichenized ancestors within Parmeliaceae, and a new generic name is introduced for one of these fungi. In all cases, the independent origins occurred c. 24 million yr ago. Further, we show that the Paleocene, Eocene and Oligocene were key periods when diversification of major lineages within Parmeliaceae occurred, with subsequent radiations occurring primarily during the Oligocene and Miocene. Our phylogenetic hypothesis supports the independent origin of lichenicolous fungi associated with climatic shifts at the Oligocene-Miocene boundary. Moreover, diversification bursts at different times may be crucial factors driving the diversification of Parmeliaceae. Additionally, our study provides novel insight into evolutionary relationships in this large and diverse family of lichen-forming ascomycetes.
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Affiliation(s)
- Pradeep K Divakar
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Ana Crespo
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Mats Wedin
- Department of Botany, Swedish Museum of Natural History, PO Box 50007, SE-104 05, Stockholm, Sweden
| | - Steven D Leavitt
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA
| | - David L Hawksworth
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Leena Myllys
- Botanical Museum, Finnish Museum of Natural History, University of Helsinki, PO Box 7, Helsinki, FI-00014, Finland
| | - Bruce McCune
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331-2902, USA
| | - Tiina Randlane
- Institute of Ecology & Earth Sciences, University of Tartu, Lai Street 38, Tartu, 51005, Estonia
| | - Jarle W Bjerke
- Norwegian Institute for Nature Research (NINA), FRAM - High North Research Centre for Climate and the Environment, NO-9296, Tromsø, Norway
| | - Yoshihito Ohmura
- National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005, Japan
| | - Imke Schmitt
- Biodiversity and Climate Research Centre BiK-F, Senckenberganlage 25, 60325, Frankfurt am Main, Germany
- Department of Biological Sciences, Institute of Ecology, Evolution and Diversity, Goethe Universität, Max-von-Laue-Str. 13, 85 D-60438, Frankfurt, Germany
| | - Carlos G Boluda
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - David Alors
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Beatriz Roca-Valiente
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Ruth Del-Prado
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Constantino Ruibal
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Kawinnat Buaruang
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
- Department of Biology, Faculty of Science, Ramkhamhaeng University, Bangkok, 10240, Thailand
| | - Jano Núñez-Zapata
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Guillermo Amo de Paz
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - Víctor J Rico
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - M Carmen Molina
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, c/ Tulipón s/n., 28933, Móstoles, Madrid, Spain
| | - John A Elix
- Research School of Chemistry, Australian National University, Building 137, Canberra, ACT, 2601, Australia
| | - Theodore L Esslinger
- Department of Biological Sciences Dept. 2715, North Dakota State University, PO Box 6050, Fargo, ND, 58108-6050, USA
| | - Inger Kristin K Tronstad
- Tromsø University Museum, University of Tromsø - The Arctic University of Norway, PO Box 6050, Langnes, NO-9037, Tromsø, Norway
| | - Hanna Lindgren
- Botanical Museum, Finnish Museum of Natural History, University of Helsinki, PO Box 7, Helsinki, FI-00014, Finland
| | - Damien Ertz
- Department of Bryophytes-Thallophytes, Domaine de Bouchout, National Botanic Garden of Belgium, 1860, Meise, Belgium
| | - Cécile Gueidan
- Department of Botany, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Lauri Saag
- Institute of Ecology & Earth Sciences, University of Tartu, Lai Street 38, Tartu, 51005, Estonia
| | - Kristiina Mark
- Institute of Ecology & Earth Sciences, University of Tartu, Lai Street 38, Tartu, 51005, Estonia
| | - Garima Singh
- Biodiversity and Climate Research Centre BiK-F, Senckenberganlage 25, 60325, Frankfurt am Main, Germany
| | - Francesco Dal Grande
- Biodiversity and Climate Research Centre BiK-F, Senckenberganlage 25, 60325, Frankfurt am Main, Germany
| | - Sittiporn Parnmen
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA
- Department of Medical Sciences, Ministry of Public Health, Tivanon Road, Nonthaburi, 11000, Thailand
| | - Andreas Beck
- Department of Lichenology and Bryology, Botanische Staatssammlung, Menzinger Str. 67 D-80638, München, Germany
| | - Michel Navarro Benatti
- Instituto de Botânica, Núcleo de Pesquisa em Micologia, Caixa Postal 68041, 04045-972, São Paulo, SP, Brazil
| | - Dan Blanchon
- Biodiversity and Animal Welfare Research Group, Department of Natural Sciences, Unitec Institute of Technology, Private Bag 92025, Auckland, 1142, New Zealand
| | - Mehmet Candan
- Department of Biology, Faculty of Science, Anadolu University, EskiŞehir, Turkey
| | - Philippe Clerc
- Conservatoire et Jardin botaniques de la Ville de Genève, CP 60, 1292, Chambésy, Switzerland
| | - Trevor Goward
- UBC Herbarium, Beaty Museum, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Martin Grube
- Institute of Plant Sciences, Karl-Franzens-University Graz, Holteigasse 6, 8010, Graz, Austria
| | - Brendan P Hodkinson
- Grice Lab, Department of Dermatology, University of Pennsylvania, BRB 1046A, 421 Curie Blvd, Philadelphia, PA, 19104, USA
| | - Jae-Seoun Hur
- Korean Lichen Research Institute, Sunchon National University, Sunchon, 540-742, Korea
| | | | - Paul M Kirika
- Botany Department, National Museums of Kenya, PO Box 45166-00100, Nairobi, Kenya
| | - James Lendemer
- Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY, 10458-5126, USA
| | - Jan-Eric Mattsson
- School of Life Sciences, Södertörn University, SE-141 89, Huddinge, Sweden
| | - María Inés Messuti
- Instituto de Investigaciones en Biodiversidad y Medioambiente (INIBIOMA) - CONICET, Universidad del Comahue, Quintral 1250, 8400, Sán Carlos de Bariloche, Río Negro, Argentina
| | | | - Matthew Nelsen
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA
| | - Jan I Ohlson
- Department of Bioinformatics and Genetics, Swedish Museum of Natural History, PO Box 50007, SE-104 05, Stockholm, Sweden
| | - Sergio Pérez-Ortega
- Departamento de Biogeoquímica y Ecología Microbiana, Museo Nacional de Ciencias Naturales, CSIC, c/ Serrano 115, E-28006, Madrid, Spain
| | - Andres Saag
- Institute of Ecology & Earth Sciences, University of Tartu, Lai Street 38, Tartu, 51005, Estonia
| | - Harrie J M Sipman
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Straße 6-8, 14195, Berlin, Germany
| | - Mohammad Sohrabi
- Iranian Research Organization for Science and Technology (IROST), 15815-115, Tehran, Iran
| | - Arne Thell
- Biologal Museum, Lund University, Box 117, SE-22100, Lund, Sweden
| | - Göran Thor
- Department of Ecology, Swedish University of Agricultural Sciences, Box 7044, SE-750 07, Uppsala, Sweden
| | - Camille Truong
- Conservatoire et Jardin botaniques de la Ville de Genève, CP 60, 1292, Chambésy, Switzerland
| | - Rebecca Yahr
- Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, UK
| | - Dalip K Upreti
- National Botanical Research Institute (CSIR), Rana Pratap Marg, Lucknow, 226001, Uttar Pradesh, India
| | - Paloma Cubas
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040, Madrid, Spain
| | - H Thorsten Lumbsch
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA
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