Abdominal fat quantification using convolutional networks

Versatile MRI acquisition and processing protocol for population-based neuroimaging

Neuroimaging has an essential role in studies of brain health and of cerebrovascular and neurodegenerative diseases, requiring the availability of versatile magnetic resonance imaging (MRI) acquisition and processing protocols. We designed and developed a multipurpose high-resolution MRI protocol for large-scale and long-term population neuroimaging studies that includes structural, diffusion-weighted and functional MRI modalities. This modular protocol takes almost 1 h of scan time and is, apart from a concluding abdominal scan, entirely dedicated to the brain. The protocol links the acquisition of an extensive set of MRI contrasts directly to the corresponding fully automated data processing pipelines and to the required quality assurance of the MRI data and of the image-derived phenotypes. Since its successful implementation in the population-based Rhineland Study (ongoing, currently more than 11,000 participants, target participant number of 20,000), the proposed MRI protocol has proved suitable for epidemiological and clinical cross-sectional and longitudinal studies, including multisite studies. The approach requires expertise in magnetic resonance image acquisition, in computer science for the data management and the execution of processing pipelines, and in brain anatomy for the quality assessment of the MRI data. The protocol takes ~1 h of MRI acquisition and ~20 h of data processing to complete for a single dataset, but parallelization over multiple datasets using high-performance computing resources reduces the processing time. By making the protocol, MRI sequences and pipelines available, we aim to contribute to better comparability, interoperability and reusability of large-scale neuroimaging data.

A review of the application of deep learning in obesity: From early prediction aid to advanced management assistance

BACKGROUND AND AIMS

Obesity is a chronic disease which can cause severe metabolic disorders. Machine learning (ML) techniques, especially deep learning (DL), have proven to be useful in obesity research. However, there is a dearth of systematic reviews of DL applications in obesity. This article aims to summarize the current trend of DL usage in obesity research.

METHODS

An extensive literature review was carried out across multiple databases, including PubMed, Embase, Web of Science, Scopus, and Medline, to collate relevant studies published from January 2018 to September 2023. The focus was on research detailing the application of DL in the context of obesity. We have distilled critical insights pertaining to the utilized learning models, encompassing aspects of their development, principal results, and foundational methodologies.

RESULTS

Our analysis culminated in the synthesis of new knowledge regarding the application of DL in the context of obesity. Finally, 40 research articles were included. The final collection of these research can be divided into three categories: obesity prediction (n = 16); obesity management (n = 13); and body fat estimation (n = 11).

CONCLUSIONS

This is the first review to examine DL applications in obesity. It reveals DL's superiority in obesity prediction over traditional ML methods, showing promise for multi-omics research. DL also innovates in obesity management through diet, fitness, and environmental analyses. Additionally, DL improves body fat estimation, offering affordable and precise monitoring tools. The study is registered with PROSPERO (ID: CRD42023475159).

Challenges in Implementing the Local Node Infrastructure for a National Federated Machine Learning Network in Radiology

Data-driven machine learning in medical research and diagnostics needs large-scale datasets curated by clinical experts. The generation of large datasets can be challenging in terms of resource consumption and time effort, while generalizability and validation of the developed models significantly benefit from variety in data sources. Training algorithms on smaller decentralized datasets through federated learning can reduce effort, but require the implementation of a specific and ambitious infrastructure to share data, algorithms and computing time. Additionally, it offers the opportunity of maintaining and keeping the data locally. Thus, data safety issues can be avoided because patient data must not be shared. Machine learning models are trained on local data by sharing the model and through an established network. In addition to commercial applications, there are also numerous academic and customized implementations of network infrastructures available. The configuration of these networks primarily differs, yet adheres to a standard framework composed of fundamental components. In this technical note, we propose basic infrastructure requirements for data governance, data science workflows, and local node set-up, and report on the advantages and experienced pitfalls in implementing the local infrastructure with the German Radiological Cooperative Network initiative as the use case example. We show how the infrastructure can be built upon some base components to reflect the needs of a federated learning network and how they can be implemented considering both local and global network requirements. After analyzing the deployment process in different settings and scenarios, we recommend integrating the local node into an existing clinical IT infrastructure. This approach offers benefits in terms of maintenance and deployment effort compared to external integration in a separate environment (e.g., the radiology department). This proposed groundwork can be taken as an exemplary development guideline for future applications of federated learning networks in clinical and scientific environments.