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For: Hancock JM, Mallon AM, Beck T, Gkoutos GV, Mungall C, Schofield PN. Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. Mamm Genome 2009;20:457-61. [PMID: 19649761 PMCID: PMC2759022 DOI: 10.1007/s00335-009-9208-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2009] [Accepted: 07/10/2009] [Indexed: 12/16/2022]
Number Cited by Other Article(s)
1
Belizário JE. The humankind genome: from genetic diversity to the origin of human diseases. Genome 2014;56:705-16. [PMID: 24433206 DOI: 10.1139/gen-2013-0125] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
2
Hancock JM. Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data. Front Genet 2014;5:93. [PMID: 24795755 PMCID: PMC4006037 DOI: 10.3389/fgene.2014.00093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Accepted: 04/03/2014] [Indexed: 01/17/2023]  Open
3
Hancock JM. Editorial: biological ontologies and semantic biology. Front Genet 2014;5:18. [PMID: 24550936 PMCID: PMC3912459 DOI: 10.3389/fgene.2014.00018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 01/21/2014] [Indexed: 01/22/2023]  Open
4
Köhler S, Doelken SC, Ruef BJ, Bauer S, Washington N, Westerfield M, Gkoutos G, Schofield P, Smedley D, Lewis SE, Robinson PN, Mungall CJ. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. F1000Res 2013;2:30. [PMID: 24358873 DOI: 10.12688/f1000research.2-30.v1] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/22/2013] [Indexed: 12/30/2022]  Open
5
Köhler S, Doelken SC, Ruef BJ, Bauer S, Washington N, Westerfield M, Gkoutos G, Schofield P, Smedley D, Lewis SE, Robinson PN, Mungall CJ. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. F1000Res 2013;2:30. [PMID: 24358873 PMCID: PMC3799545 DOI: 10.12688/f1000research.2-30.v2] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/20/2014] [Indexed: 12/11/2022]  Open
6
Beck T, Free RC, Thorisson GA, Brookes AJ. Semantically enabling a genome-wide association study database. J Biomed Semantics 2012;3:9. [PMID: 23244533 PMCID: PMC3579732 DOI: 10.1186/2041-1480-3-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2012] [Accepted: 08/22/2012] [Indexed: 01/03/2023]  Open
7
Gkoutos GV, Hoehndorf R. Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J Biomed Semantics 2012;3 Suppl 2:S6. [PMID: 23046642 PMCID: PMC3448529 DOI: 10.1186/2041-1480-3-s2-s6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
8
Vik JO, Gjuvsland AB, Li L, Tøndel K, Niederer S, Smith NP, Hunter PJ, Omholt SW. Genotype-Phenotype Map Characteristics of an In silico Heart Cell. Front Physiol 2011;2:106. [PMID: 22232604 PMCID: PMC3246639 DOI: 10.3389/fphys.2011.00106] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2011] [Accepted: 12/05/2011] [Indexed: 11/22/2022]  Open
9
Schulz MH, Köhler S, Bauer S, Robinson PN. Exact score distribution computation for ontological similarity searches. BMC Bioinformatics 2011;12:441. [PMID: 22078312 PMCID: PMC3240574 DOI: 10.1186/1471-2105-12-441] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2011] [Accepted: 11/12/2011] [Indexed: 11/10/2022]  Open
10
Köhler S, Bauer S, Mungall CJ, Carletti G, Smith CL, Schofield P, Gkoutos GV, Robinson PN. Improving ontologies by automatic reasoning and evaluation of logical definitions. BMC Bioinformatics 2011;12:418. [PMID: 22032770 PMCID: PMC3224779 DOI: 10.1186/1471-2105-12-418] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2011] [Accepted: 10/27/2011] [Indexed: 01/16/2023]  Open
11
Espinosa O, Hancock JM. A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping. PLoS One 2011;6:e19693. [PMID: 21625554 PMCID: PMC3098258 DOI: 10.1371/journal.pone.0019693] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2011] [Accepted: 04/11/2011] [Indexed: 01/22/2023]  Open
12
Masuya H, Makita Y, Kobayashi N, Nishikata K, Yoshida Y, Mochizuki Y, Doi K, Takatsuki T, Waki K, Tanaka N, Ishii M, Matsushima A, Takahashi S, Hijikata A, Kozaki K, Furuichi T, Kawaji H, Wakana S, Nakamura Y, Yoshiki A, Murata T, Fukami-Kobayashi K, Mohan S, Ohara O, Hayashizaki Y, Mizoguchi R, Obata Y, Toyoda T. The RIKEN integrated database of mammals. Nucleic Acids Res 2010;39:D861-70. [PMID: 21076152 PMCID: PMC3013680 DOI: 10.1093/nar/gkq1078] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
13
Schofield PN, Gruenberger M, Sundberg JP. Pathbase and the MPATH ontology. Community resources for mouse histopathology. Vet Pathol 2010;47:1016-20. [PMID: 20587689 PMCID: PMC3038412 DOI: 10.1177/0300985810374845] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
14
Robinson PN, Mundlos S. The human phenotype ontology. Clin Genet 2010;77:525-34. [PMID: 20412080 DOI: 10.1111/j.1399-0004.2010.01436.x] [Citation(s) in RCA: 212] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
15
Bodenreider O, Burgun A. A framework for comparing phenotype annotations of orthologous genes. Stud Health Technol Inform 2010;160:1309-13. [PMID: 20841896 PMCID: PMC4300101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
16
Morgan H, Beck T, Blake A, Gates H, Adams N, Debouzy G, Leblanc S, Lengger C, Maier H, Melvin D, Meziane H, Richardson D, Wells S, White J, Wood J, de Angelis MH, Brown SDM, Hancock JM, Mallon AM. EuroPhenome: a repository for high-throughput mouse phenotyping data. Nucleic Acids Res 2009;38:D577-85. [PMID: 19933761 PMCID: PMC2808931 DOI: 10.1093/nar/gkp1007] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
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