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Mori R, Mino H, Durand DM. Pulse-frequency-dependent resonance in a population of pyramidal neuron models. BIOLOGICAL CYBERNETICS 2022; 116:363-375. [PMID: 35303154 DOI: 10.1007/s00422-022-00925-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 02/18/2022] [Indexed: 05/07/2023]
Abstract
Stochastic resonance is known as a phenomenon whereby information transmission of weak signal or subthreshold stimuli can be enhanced by additive random noise with a suitable intensity. Another phenomenon induced by applying deterministic pulsatile electric stimuli with a pulse frequency, commonly used for deep brain stimulation (DBS), was also shown to improve signal-to-noise ratio in neuron models. The objective of this study was to test the hypothesis that pulsatile high-frequency stimulation could improve the detection of both sub- and suprathreshold synaptic stimuli by tuning the frequency of the stimulation in a population of pyramidal neuron models. Computer simulations showed that mutual information estimated from a population of neural spike trains displayed a typical resonance curve with a peak value of the pulse frequency at 80-120 Hz, similar to those utilized for DBS in clinical situations. It is concluded that a "pulse-frequency-dependent resonance" (PFDR) can enhance information transmission over a broad range of synaptically connected networks. Since the resonance frequency matches that used clinically, PFDR could contribute to the mechanism of the therapeutic effect of DBS.
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Affiliation(s)
- Ryosuke Mori
- Department of Engineering, Graduate School of Engineering, Kanto Gakuin University, 1-50-1 Mutsuura E., Kanazawa-ku, Yokohama, 236-8501, Japan
| | - Hiroyuki Mino
- Department of Engineering, Graduate School of Engineering, Kanto Gakuin University, 1-50-1 Mutsuura E., Kanazawa-ku, Yokohama, 236-8501, Japan.
| | - Dominique M Durand
- Department of Biomedical Engineering, Neural Engineering Center, Case Western Reserve University, Cleveland, OH, 44106, USA
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Abstract
Power spectra of spike trains reveal important properties of neuronal behavior. They exhibit several peaks, whose shape and position depend on applied stimuli and intrinsic biophysical properties, such as input current density and channel noise. The position of the spectral peaks in the frequency domain is not straightforwardly predictable from statistical averages of the interspike intervals, especially when stochastic behavior prevails. In this work, we provide a model for the neuronal power spectrum, obtained from Discrete Fourier Transform and expressed as a series of expected value of sinusoidal terms. The first term of the series allows us to estimate the frequencies of the spectral peaks to a maximum error of a few Hz, and to interpret why they are not harmonics of the first peak frequency. Thus, the simple expression of the proposed power spectral density (PSD) model makes it a powerful interpretative tool of PSD shape, and also useful for neurophysiological studies aimed at extracting information on neuronal behavior from spike train spectra.
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Rusakov DA, Savtchenko LP, Latham PE. Noisy Synaptic Conductance: Bug or a Feature? Trends Neurosci 2020; 43:363-372. [PMID: 32459990 PMCID: PMC7902755 DOI: 10.1016/j.tins.2020.03.009] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 03/10/2020] [Accepted: 03/23/2020] [Indexed: 12/31/2022]
Abstract
More often than not, action potentials fail to trigger neurotransmitter release. And even when neurotransmitter is released, the resulting change in synaptic conductance is highly variable. Given the energetic cost of generating and propagating action potentials, and the importance of information transmission across synapses, this seems both wasteful and inefficient. However, synaptic noise arising from variable transmission can improve, in certain restricted conditions, information transmission. Under broader conditions, it can improve information transmission per release, a quantity that is relevant given the energetic constraints on computing in the brain. Here we discuss the role, both positive and negative, synaptic noise plays in information transmission and computation in the brain.
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Affiliation(s)
- Dmitri A Rusakov
- Queen Square UCL Institute of Neurology, University College London, Queen Square, London, WC1N 3BG, UK.
| | - Leonid P Savtchenko
- Queen Square UCL Institute of Neurology, University College London, Queen Square, London, WC1N 3BG, UK.
| | - Peter E Latham
- Gatsby Computational Neuroscience Unit, University College London, 25 Howland Street, London, W1T 4JG, UK.
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Orcioni S, Paffi A, Camera F, Apollonio F, Liberti M. Automatic decoding of input sinusoidal signal in a neuron model: High pass homomorphic filtering. Neurocomputing 2018. [DOI: 10.1016/j.neucom.2018.03.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Orcioni S, Paffi A, Camera F, Apollonio F, Liberti M. Automatic decoding of input sinusoidal signal in a neuron model: Improved SNR spectrum by low-pass homomorphic filtering. Neurocomputing 2017. [DOI: 10.1016/j.neucom.2017.06.029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Alagapan S, Franca E, Pan L, Leondopulos S, Wheeler BC, DeMarse TB. Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies. Front Bioeng Biotechnol 2016; 4:15. [PMID: 26973833 PMCID: PMC4770194 DOI: 10.3389/fbioe.2016.00015] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2015] [Accepted: 02/04/2016] [Indexed: 11/13/2022] Open
Abstract
In this study, we created four network topologies composed of living cortical neurons and compared resultant structural-functional dynamics including the nature and quality of information transmission. Each living network was composed of living cortical neurons and were created using microstamping of adhesion promoting molecules and each was "designed" with different levels of convergence embedded within each structure. Networks were cultured over a grid of electrodes that permitted detailed measurements of neural activity at each node in the network. Of the topologies we tested, the "Random" networks in which neurons connect based on their own intrinsic properties transmitted information embedded within their spike trains with higher fidelity relative to any other topology we tested. Within our patterned topologies in which we explicitly manipulated structure, the effect of convergence on fidelity was dependent on both topology and time-scale (rate vs. temporal coding). A more detailed examination using tools from network analysis revealed that these changes in fidelity were also associated with a number of other structural properties including a node's degree, degree-degree correlations, path length, and clustering coefficients. Whereas information transmission was apparent among nodes with few connections, the greatest transmission fidelity was achieved among the few nodes possessing the highest number of connections (high degree nodes or putative hubs). These results provide a unique view into the relationship between structure and its affect on transmission fidelity, at least within these small neural populations with defined network topology. They also highlight the potential role of tools such as microstamp printing and microelectrode array recordings to construct and record from arbitrary network topologies to provide a new direction in which to advance the study of structure-function relationships.
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Affiliation(s)
- Sankaraleengam Alagapan
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida , Gainesville, FL , USA
| | - Eric Franca
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida , Gainesville, FL , USA
| | - Liangbin Pan
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida , Gainesville, FL , USA
| | - Stathis Leondopulos
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida , Gainesville, FL , USA
| | - Bruce C Wheeler
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL, USA; Department of Biomedical Engineering, University of California San Diego, San Diego, CA, USA
| | - Thomas B DeMarse
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL, USA; Department of Pediatric Neurology, University of Florida, Gainesville, FL, USA
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Durand DM, Kawaguchi M, Mino H. Reverse stochastic resonance in a hippocampal CA1 neuron model. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2013:5242-5. [PMID: 24110918 DOI: 10.1109/embc.2013.6610731] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Stochastic resonance (SR) is a ubiquitous and counter- intuitive phenomenon whereby the addition of noise to a non-linear system can improve the detection of sub-threshold signals. The "signal" is normally periodic or deterministic whereas the "noise" is normally stochastic. However, in neural systems, signals are often stochastic. Moreover, periodic signals are applied near neurons to control neural excitability (i.e. deep brain stimulation). We therefore tested the hypothesis that a quasi-periodic signal applied to a neural network could enhance the detection of a stochastic neural signal (reverse stochastic resonance). Using computational methods, a CA1 hippocampal neuron was simulated and a Poisson distributed subthreshold synaptic input ("signal") was applied to the synaptic terminals. A periodic or quasi periodic pulse train at various frequencies ("noise") was applied to an extracellular electrode located near the neuron. The mutual information and information transfer rate between the output and input of the neuron were calculated. The results display the signature of stochastic resonance with information transfer reaching a maximum value for increasing power (or frequency) of the "noise". This result shows that periodic signals applied extracellularly can improve the detection of subthreshold stochastic neural signals. The optimum frequency (110 Hz) is similar to that used in patients with Parkinson's suggesting that this phenomenon could play a role in the therapeutic effect of high frequency stimulation.
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Danziger Z, Grill WM. A neuron model of stochastic resonance using rectangular pulse trains. J Comput Neurosci 2014; 38:53-66. [PMID: 25186655 DOI: 10.1007/s10827-014-0526-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Revised: 08/14/2014] [Accepted: 08/17/2014] [Indexed: 11/25/2022]
Abstract
Stochastic resonance (SR) is the enhanced representation of a weak input signal by the addition of an optimal level of broadband noise to a nonlinear (threshold) system. Since its discovery in the 1980s the domain of input signals shown to be applicable to SR has greatly expanded, from strictly periodic inputs to now nearly any aperiodic forcing function. The perturbations (noise) used to generate SR have also expanded, from white noise to now colored noise or vibrational forcing. This study demonstrates that a new class of perturbations can achieve SR, namely, series of stochastically generated biphasic pulse trains. Using these pulse trains as 'noise' we show that a Hodgkin Huxley model neuron exhibits SR behavior when detecting weak input signals. This result is of particular interest to neuroscience because nearly all artificial neural stimulation is implemented with square current or voltage pulses rather than broadband noise, and this new method may facilitate the translation of the performance gains achievable through SR to neural prosthetics.
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Affiliation(s)
- Zachary Danziger
- Department of Biomedical Engineering, Duke University, Campus box 90281, Durham, NC, 27708-0281, USA,
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Rausch VH, Bauch EM, Bunzeck N. White noise improves learning by modulating activity in dopaminergic midbrain regions and right superior temporal sulcus. J Cogn Neurosci 2013; 26:1469-80. [PMID: 24345178 DOI: 10.1162/jocn_a_00537] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
In neural systems, information processing can be facilitated by adding an optimal level of white noise. Although this phenomenon, the so-called stochastic resonance, has traditionally been linked with perception, recent evidence indicates that white noise may also exert positive effects on cognitive functions, such as learning and memory. The underlying neural mechanisms, however, remain unclear. Here, on the basis of recent theories, we tested the hypothesis that auditory white noise, when presented during the encoding of scene images, enhances subsequent recognition memory performance and modulates activity within the dopaminergic midbrain (i.e., substantia nigra/ventral tegmental area, SN/VTA). Indeed, in a behavioral experiment, we can show in healthy humans that auditory white noise-but not control sounds, such as a sinus tone-slightly improves recognition memory. In an fMRI experiment, white noise selectively enhances stimulus-driven phasic activity in the SN/VTA and auditory cortex. Moreover, it induces stronger connectivity between SN/VTA and right STS, which, in addition, exhibited a positive correlation with subsequent memory improvement by white noise. Our results suggest that the beneficial effects of auditory white noise on learning depend on dopaminergic neuromodulation and enhanced connectivity between midbrain regions and the STS-a key player in attention modulation. Moreover, they indicate that white noise could be particularly useful to facilitate learning in conditions where changes of the mesolimbic system are causally related to memory deficits including healthy and pathological aging.
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Wasserman CS, Segool N. Working in and with Noise: The Impact of Audio Environment on Attention. ACTA ACUST UNITED AC 2013. [DOI: 10.1080/10874208.2013.847147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Noise enhances information transfer in hierarchical networks. Sci Rep 2013; 3:1223. [PMID: 23390574 PMCID: PMC3565226 DOI: 10.1038/srep01223] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2012] [Accepted: 01/11/2013] [Indexed: 11/21/2022] Open
Abstract
We study the influence of noise on information transmission in the form of packages shipped between nodes of hierarchical networks. Numerical simulations are performed for artificial tree networks, scale-free Ravasz-Barabási networks as well for a real network formed by email addresses of former Enron employees. Two types of noise are considered. One is related to packet dynamics and is responsible for a random part of packets paths. The second one originates from random changes in initial network topology. We find that the information transfer can be enhanced by the noise. The system possesses optimal performance when both kinds of noise are tuned to specific values, this corresponds to the Stochastic Resonance phenomenon. There is a non-trivial synergy present for both noisy components. We found also that hierarchical networks built of nodes of various degrees are more efficient in information transfer than trees with a fixed branching factor.
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Kawaguchi M, Mino H, Momose K, Durand DM. Stochastic resonance with a mixture of sub-and supra-threshold stimuli in a population of neuron models. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2011:7328-31. [PMID: 22256031 DOI: 10.1109/iembs.2011.6091709] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
This paper presents a novel type of stochastic resonance (SR) with a mixture of sub- and supra-threshold stimuli in a population of neuron models beyond regular SR and Supra-threshold SR (SSR) phenomena. We investigate through computer simulations if the novel type of SR can be observed or not, using the mutual information (MI) estimated from a population of neural spike trains as an index of information transmission. Computer simulations showed that the MI had a typical type of SR curves, even when the balance between sub-and supra-threshold stimuli was varied, suggesting the novel type of SR. Moreover, the peak of MI increased as the balance of supra-threshold stimuli got stronger, i.e., as the situation was getting close to the SSR from the regular SR. This finding could accelerate our understanding about how fluctuations play a role in processing information carried by a mixture of sub-and supra-threshold stimuli.
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Affiliation(s)
- Minato Kawaguchi
- Institute of Science and Technology, Kanto Gakuin University, 1-50-1 Mutsuura E, Kanazawa-ku, Yokohama 236-8501, Japan. gutch
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Kawaguchi M, Mino H, Durand DM. Stochastic Resonance Can Enhance Information Transmission in Neural Networks. IEEE Trans Biomed Eng 2011; 58:1950-8. [DOI: 10.1109/tbme.2011.2126571] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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McDonnell MD, Ward LM. The benefits of noise in neural systems: bridging theory and experiment. Nat Rev Neurosci 2011; 12:415-26. [PMID: 21685932 DOI: 10.1038/nrn3061] [Citation(s) in RCA: 420] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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