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Ren W, Penttilä R, Kasanen R, Asiegbu FO. Interkingdom and intrakingdom interactions in the microbiome of Heterobasidion fruiting body and associated decayed woody tissues. Appl Environ Microbiol 2023; 89:e0140623. [PMID: 38014962 PMCID: PMC10734517 DOI: 10.1128/aem.01406-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 10/06/2023] [Indexed: 11/29/2023] Open
Abstract
IMPORTANCE We applied macro- (forest stand and forest management) and micro-scale (bacterial and fungal community) analyses for a better understanding of the Heterobasidion pathosystem and associated wood decay process. The core microbiome, as defined by hierarchy analysis and a consistent model, and environmental factors correlation with the community assembly were found to be novel.
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Affiliation(s)
- Wenzi Ren
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Reijo Penttilä
- Natural Resources Institute Finland (Luke), Helsinki, Finland
| | - Risto Kasanen
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Fred O. Asiegbu
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
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Cortés-Molino Á, Linares JC, Viñegla B, Lechuga V, Salvo-Tierra AE, Flores-Moya A, Fernández-Luque I, Carreira JA. Unexpected resilience in relict Abies pinsapo Boiss forests to dieback and mortality induced by climate change. FRONTIERS IN PLANT SCIENCE 2022; 13:991720. [PMID: 36618643 PMCID: PMC9822712 DOI: 10.3389/fpls.2022.991720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 12/02/2022] [Indexed: 06/17/2023]
Abstract
Acute and early symptoms of forest dieback linked to climate warming and drought episodes have been reported for relict Abies pinsapo Boiss. fir forests from Southern Spain, particularly at their lower ecotone. Satellite, orthoimages, and field data were used to assess forest decline, tree mortality, and gap formation and recolonization in the lower half of the altitudinal range of A. pinsapo forests (850-1550 m) for the last 36 years (1985-2020). Field surveys were carried out in 2003 and in 2020 to characterize changes in stand canopy structure and mortality rates across the altitudinal range. Time series of the Normalized Difference Vegetation Index (NDVI) at the end of the dry season (derived from Landsat 5 and 7 imagery) were used for a Dynamic Factor Analysis to detect common trends across altitudinal bands and topographic solar incidence gradients (SI). Historical canopy cover changes were analyzed through aerial orthoimages classification. Here we show that extensive decline and mortality contrast to the almost steady alive basal area for 17 years, as well as the rising photosynthetic activity derived from NDVI since the mid-2000s and an increase in the forest canopy cover in the late years at mid and high altitudes. We hypothesized that these results suggest an unexpected resilience in A. pinsapo forests to climate change-induced dieback, that might be promoted by compensation mechanisms such as (i) recruitment of new A. pinsapo individuals; (ii) facilitative effects on such recruitment mediated by revegetation with other species; and (iii) a 'release effect' in which surviving trees can thrive with fewer resource competition. Future research is needed to understand these compensation mechanisms and their scope in future climate change scenarios.
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Affiliation(s)
- Álvaro Cortés-Molino
- Centro de Estudios Avanzados en Ciencias de la Tierra, Energía y Medio Ambiente (CEACTEMA), Universidad de Jaén, Jaén, Spain
- Departamento de Botánica y Fisiología Vegetal, Universidad de Málaga, Málaga, Spain
| | - Juan Carlos Linares
- Departamento de Sistemas Físicos, Químicos y Naturales, Universidad de Pablo Olavide, Sevilla, Spain
| | - Benjamín Viñegla
- Centro de Estudios Avanzados en Ciencias de la Tierra, Energía y Medio Ambiente (CEACTEMA), Universidad de Jaén, Jaén, Spain
| | - Víctor Lechuga
- Centro de Estudios Avanzados en Ciencias de la Tierra, Energía y Medio Ambiente (CEACTEMA), Universidad de Jaén, Jaén, Spain
| | | | - Antonio Flores-Moya
- Departamento de Botánica y Fisiología Vegetal, Universidad de Málaga, Málaga, Spain
| | | | - Jose A. Carreira
- Centro de Estudios Avanzados en Ciencias de la Tierra, Energía y Medio Ambiente (CEACTEMA), Universidad de Jaén, Jaén, Spain
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Cortés-Molino Á, Aulló-Maestro I, Fernandez-Luque I, Flores-Moya A, Carreira JA, Salvo AE. Using ForeStereo and LIDAR data to assess fire and canopy structure-related risks in relict Abies pinsapo Boiss. forests. PeerJ 2020; 8:e10158. [PMID: 33150077 PMCID: PMC7585724 DOI: 10.7717/peerj.10158] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 09/21/2020] [Indexed: 11/20/2022] Open
Abstract
In this study we combine information from aerial LIDAR and hemispherical images taken in the field with ForeStereo-a forest inventory device-to assess the vulnerability and to design conservation strategies for endangered Mediterranean fir forests based on the mapping of fire risk and canopy structure spatial variability. We focused on the largest continuous remnant population of the endangered tree species Abies pinsapo Boiss. spanning 252 ha in Sierra de las Nieves National Park (South Andalusia, Spain). We established 49 sampling plots over the study area. Stand structure variables were derived from ForeStereo device, a proximal sensing technology for tree diameter, height and crown dimensions and stand crown cover and basal area retrieval from stereoscopic hemispherical images photogrammetry. With this information, we developed regression models with airborne LIDAR data (spatial resolution of 0.5 points∙m-2). Thereafter, six fuel models were fitted to the plots according to the UCO40 classification criteria, and then the entire area was classified using the Nearest Neighbor algorithm on Sentinel imagery (overall accuracy of 0.56 and a KIA-Kappa Coefficient of 0.46). FlamMap software was used for fire simulation scenarios based on fuel models, stand structure, and terrain data. Besides the fire simulation, we analyzed canopy structure to assess the status and vulnerability of this fir population. The assessment shows a secondary growth forest that has an increasing presence of fuel models with the potential for high fire spread rate fire and burn probability. Our methodological approach has the potential to be integrated as a support tool for the adaptive management and conservation of A. pinsapo across its whole distribution area (<4,000 ha), as well as for other endangered circum-Mediterranean fir forests, as A. numidica de Lannoy and A. pinsapo marocana Trab. in North Africa.
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Affiliation(s)
- Álvaro Cortés-Molino
- Departamento de Botánica y Fisiología Vegetal, Universidad de Málaga, Málaga, Spain
| | - Isabel Aulló-Maestro
- Escuela Técnica Superior de Ingeniería de Montes, Forestal y del Medio Natural, Universidad Politécnica de Madrid, Madrid, Spain.,Departamento de Silvicultura y Gestión Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Centro de Investigación Forestal (INIA-CIFOR), Madrid, Spain
| | | | - Antonio Flores-Moya
- Departamento de Botánica y Fisiología Vegetal, Universidad de Málaga, Málaga, Spain
| | - José A Carreira
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Jaén, Spain
| | - A Enrique Salvo
- Departamento de Botánica y Fisiología Vegetal, Universidad de Málaga, Málaga, Spain
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Ghanbary E, Tabari Kouchaksaraei M, Zarafshar M, Bader KFM, Mirabolfathy M, Ziaei M. Differential physiological and biochemical responses of Quercus infectoria and Q. libani to drought and charcoal disease. PHYSIOLOGIA PLANTARUM 2020; 168:876-892. [PMID: 31517996 DOI: 10.1111/ppl.13027] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 08/22/2019] [Accepted: 09/11/2019] [Indexed: 05/24/2023]
Abstract
The vast oak-dominated forests of the Zagros Mountains in southwestern Iran currently undergo large-scale dieback driven by a combination of drought and increasing incidence of charcoal disease caused by the fungal pathogens Biscogniauxia mediterranea and Obolarina persica. Here, we explore the interactive effects between drought and charcoal disease agents on the physiology and biochemistry of Quercus infectoria and Quercus libani seedlings. The combination of pathogen attack and water limitation hampered plant development, especially in Q. libani seedlings, negatively affecting growth, biomass production, photosynthetic efficiency, and leaf water potential. An increase in markers of oxidative damage together with the upregulation of the antioxidant defense revealed that drought stress and pathogen infection led to pro-oxidative conditions in both oak species, especially in Q. libani, where larger changes in malondialdehyde and hydrogen peroxide occurred. The upregulation of the antioxidant system was more prominent in Q. infectoria than in Q. libani, resulting in enhanced enzyme activity and accumulation of non-enzymatic antioxidants. Fungal infection stimulated the activity of chitinase, phenylalanine ammonia lyase and β-1,3-glucanase in Q. infectoria leaves and this response became more pronounced under water shortage. Our study highlights that drought stress greatly intensifies the effects of the charcoal disease. Moreover, our findings imply superior stress resistance of Q. infectoria conferred by a highly efficient antioxidant system, strong osmotic adjustment (through proline), and increases in resistance enzymes and secondary metabolites (phenols and flavonoids). Future investigations should focus on adult trees in their natural habitat including interactions with soil factors and other pathogens like nematodes, bacteria and other fungi. Because the present research was conducted on oak seedlings, the findings can be considered by forest nursery managers.
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Affiliation(s)
- Ehsan Ghanbary
- Forestry Department, Faculty of Natural Resources, Tarbiat Modares University, Tehran, Iran
| | | | - Mehrdad Zarafshar
- Natural Resources Department, Fars Agricultural and Natural Resources Research and Education Center, AREEO, Shiraz, Iran
| | - Karl-Friedrich M Bader
- Institute for Applied Ecology New Zealand, School of Science, Auckland University of Technology, Auckland, New Zealand
| | | | - Maryam Ziaei
- Post-graduate of Forestry, Gorgan University of Agriculture Sciences & Natural Resources, Gorgan, Iran
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Potential Interactions between Invasive Fusarium circinatum and Other Pine Pathogens in Europe. FORESTS 2019. [DOI: 10.3390/f11010007] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Pines are major components of native forests and plantations in Europe, where they have both economic significance and an important ecological role. Diseases of pines are mainly caused by fungal and oomycete pathogens, and can significantly reduce the survival, vigor, and yield of both individual trees and entire stands or plantations. Pine pitch canker (PPC), caused by Fusarium circinatum (Nirenberg and O’Donnell), is among the most devastating pine diseases in the world, and is an example of an emergent invasive disease in Europe. The effects of microbial interactions on plant health, as well as the possible roles plant microbiomes may have in disease expression, have been the focus of several recent studies. Here, we describe the possible effects of co-infection with pathogenic fungi and oomycetes with F. circinatum on the health of pine seedlings and mature plants, in an attempt to expand our understanding of the role that biotic interactions may play in the future of PPC disease in European nurseries and forests. The available information on pine pathogens that are able to co-occur with F. circinatum in Europe is here reviewed and interpreted to theoretically predict the effects of such co-occurrences on pine survival, growth, and yield. Beside the awareness that F. circinatum may co-occurr on pines with other pathogens, an additional outcome from this review is an updating of the literature, including the so-called grey literature, to document the geographical distribution of the relevant pathogens and to facilitate differential diagnoses, particularly in nurseries, where some of them may cause symptoms similar to those induced by F. circinatum. An early and accurate diagnosis of F. circinatum, a pathogen that has been recently introduced and that is currently regulated in Europe, is essential to prevent its introduction and spread in plantings and forests.
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Low Water Availability Increases Necrosis in Picea abies after Artificial Inoculation with Fungal Root Rot Pathogens Heterobasidion parviporum and Heterobasidion annosum. FORESTS 2019. [DOI: 10.3390/f10010055] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Research Highlights: Dedicated experiments to investigate how disturbances will affect Heterobasidion sp.—Norway spruce pathosystems are important, in order to develop different strategies to limit the spread of Heterobasidion annosum s.l. under the predicted climate change. Here, we report on a greenhouse experiment to evaluate the effects of water availability on the infection severity of Heterobasidion parviporum or Heterobasidion annosum, respectively, on Picea abies saplings. Background and Objectives: Changes in climatic conditions and intense logging will continue to promote H. annosum s.l. in conifer forests, increasing annual economic losses. Thus, our aim was to test if disease severity in Norway spruce was greater after infection with H. parviporum or H. annosum in low water availability conditions, compared to seedlings with high water availability. Materials and Methods: We performed inoculation studies of three-year-old saplings in a greenhouse. Saplings were treated as high (+) or low (−) water groups: High water group received double the water amount than the low water group. The necrosis observed after pathogen inoculation was measured and analyzed. Results: The seedling growth was negatively influenced in the lower water group. In addition, the water availability enhanced the necrosis length of H. parviporum in phloem and sapwood (vertical length) in the low water group. H. annosum benefited only in horizontal length in the phloem. Conclusions: Disturbances related to water availability, especially low water conditions, can have negative effects on the tree host and benefit the infection ability of the pathogens in the host.
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Drought Influence over Radial Growth of Mexican Conifers Inhabiting Mesic and Xeric Sites. FORESTS 2017. [DOI: 10.3390/f8050175] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Woolbright SA, Whitham TG, Gehring CA, Allan GJ, Bailey JK. Climate relicts and their associated communities as natural ecology and evolution laboratories. Trends Ecol Evol 2014; 29:406-16. [PMID: 24932850 DOI: 10.1016/j.tree.2014.05.003] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Revised: 05/02/2014] [Accepted: 05/06/2014] [Indexed: 10/25/2022]
Abstract
Climate relicts, marginal populations that have become isolated via climate-driven range shifts, preserve ecological and evolutionary histories that can span millennia. Studies point to climate relicts as 'natural laboratories' for investigating how long-term environmental change impacts species and populations. However, we propose that such research should be expanded to reveal how climate change affects 'interacting' species in ways that reshape community composition and evolution. Biotic interactions and their community and ecosystem effects are often genetically based and driven by associations with foundation species. We discuss evolution in climate relicts within the context of the emerging fields of community and ecosystem genetics, exploring the idea that foundation relicts are also natural community and ecosystem laboratories and windows to future landscapes.
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Affiliation(s)
- Scott A Woolbright
- The Institute for Genomic Biology, University of Illinois, Urbana-Champaign, IL 61801, USA.
| | - Thomas G Whitham
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA; Merriam-Powell Center for Environmental Research, Northern Arizona University, Flagstaff, AZ 86011, USA
| | - Catherine A Gehring
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA; Merriam-Powell Center for Environmental Research, Northern Arizona University, Flagstaff, AZ 86011, USA
| | - Gerard J Allan
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA; Merriam-Powell Center for Environmental Research, Northern Arizona University, Flagstaff, AZ 86011, USA
| | - Joseph K Bailey
- Department of Ecology and Evolution, University of Tennessee, Knoxville, TN 37996, USA
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Hampe A, Jump AS. Climate Relicts: Past, Present, Future. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2011. [DOI: 10.1146/annurev-ecolsys-102710-145015] [Citation(s) in RCA: 298] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Arndt Hampe
- Department of Integrative Ecology, Estación Biológica de Doñana, 41092 Sevilla, Spain;
| | - Alistair S. Jump
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling FK9 4LA, United Kingdom;
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