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Arya PS, Yagnik SM, Rajput KN, Panchal RR, Raval VH. Understanding the Basis of Occurrence, Biosynthesis, and Implications of Thermostable Alkaline Proteases. Appl Biochem Biotechnol 2021; 193:4113-4150. [PMID: 34648116 DOI: 10.1007/s12010-021-03701-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 10/04/2021] [Indexed: 12/29/2022]
Abstract
The group of hydrolytic enzymes synonymously known as proteases is predominantly most favored for the class of industrial enzymes. The present work focuses on the thermostable nature of these proteolytic enzymes that occur naturally among mesophilic and thermophilic microbes. The broad thermo-active feature (40-80 °C), ease of cultivation, maintenance, and bulk production are the key features associated with these enzymes. Detailing of contemporary production technologies, and controllable operational parameters including the purification strategies, are the key features that justify their industrial dominance as biocatalysts. In addition, the rigorous research inputs by protein engineering and enzyme immobilization studies add up to the thermo-catalytic features and application capabilities of these enzymes. The work summarizes key features of microbial proteases that make them numero-uno for laundry, biomaterials, waste management, food and feed, tannery, and medical as well as pharmaceutical industries. The quest for novel and/or designed and engineered thermostable protease from unexplored sources is highly stimulating and will address the ever-increasing industrial demands.
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Affiliation(s)
- Prashant S Arya
- Department of Microbiology and Biotechnology, School of Sciences, Gujarat University, Ahmedabad, 380009, India
| | - Shivani M Yagnik
- Department of Microbiology and Biotechnology, School of Sciences, Gujarat University, Ahmedabad, 380009, India
| | - Kiransinh N Rajput
- Department of Microbiology and Biotechnology, School of Sciences, Gujarat University, Ahmedabad, 380009, India
| | - Rakeshkumar R Panchal
- Department of Microbiology and Biotechnology, School of Sciences, Gujarat University, Ahmedabad, 380009, India
| | - Vikram H Raval
- Department of Microbiology and Biotechnology, School of Sciences, Gujarat University, Ahmedabad, 380009, India.
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Kiran GS, Sajayan A, Gopal Priyadharshini, Balakrishnan A, Prathiviraj R, Sabu A, Selvin J. A novel anti-infective molecule nesfactin identified from sponge associated bacteria Nesterenkonia sp. MSA31 against multidrug resistant Pseudomonas aeruginosa. Microb Pathog 2021; 157:104923. [PMID: 34000302 DOI: 10.1016/j.micpath.2021.104923] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 03/17/2021] [Accepted: 03/18/2021] [Indexed: 11/29/2022]
Abstract
Overuse of antibiotics coupled with biofilm-forming ability has led to the emergence of multi-drug P. aeruginosa strains worldwide. Quorum sensing is a bacterial cell-cell communication system that regulates the expression of genes, including virulence factors, through production of acyl-homoserine lactones (AHLs) in Pseudomonas aeruginosa. The phenotypic expression of virulence factors in P. aeruginosa is mediated by quorum sensing systems (las and rhl). In this study an anti-infective molecule produced by a marine actinomycetes Nesterenkonia sp. MSA31 was elucidated as lipopeptide by NMR and LC-MS/MS analysis. The new lipopeptide molecule was named Nesfactin. This molecule effectively inhibited virulence phenotypes including production of hemolysin, protease, lipase, phospholipase, esterase, elastase, rhamnolipid, alginate, and pyocyanin, as well as motility and biofilm formation in P. aeruginosa. The high-performance thin layer chromatography (HPTLC) analysis revealed that the lipopeptide (50 μg/mL) inhibited production of the AHLs produced by the las and rhl quorum sensing systems (3-oxo-C12-HSL and C4-HSL, respectively). Docking analysis showed the binding affinity of the ligand towards the quorum sensing receptor molecules. The confocal laser scanning microscopy images showed the anti-biofilm effect of lipopeptide against P. aeruginosa. Nesfactin based hydrogel showed a significant antibiofilm effect on the catheter. This study suggests that the lipopeptide may be an effective anti-virulence treatment for Pseudomonas aeruginosa infections.
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Affiliation(s)
- George Seghal Kiran
- Department of Food Science and Technology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Arya Sajayan
- Department of Food Science and Technology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Gopal Priyadharshini
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Aarthy Balakrishnan
- Department of Food Science and Technology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - R Prathiviraj
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Abdulhameed Sabu
- Department of Biotechnology and Microbiology, Kannur University, Kannur, India
| | - Joseph Selvin
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India.
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Balachandran C, Vishali A, Nagendran NA, Baskar K, Hashem A, Abd_Allah EF. Optimization of protease production from Bacillus halodurans under solid state fermentation using agrowastes. Saudi J Biol Sci 2021; 28:4263-4269. [PMID: 34354408 PMCID: PMC8324923 DOI: 10.1016/j.sjbs.2021.04.069] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Revised: 03/08/2021] [Accepted: 04/21/2021] [Indexed: 11/30/2022] Open
Abstract
Marine microbes are potential source for novel metabolites. They are efficient in producing these metabolites utilizing agrowastes. Protease is one of the enzymes which find wide industrial applications. In the present study, protease producing bacteria was isolated from marine sediments and the organism was identified as Bacillus halodurans. The organism was subjected to protease production under solid state fermentation (SSF) using different agrowastes as substrates. Among the substrates used, wheat bran yielded maximum quantity of protease. The fermentation process was carried out under different cultural conditions to optimize the parameters influencing the enzyme production. The results of the stain removal studies by the enzyme revealed the increased efficiency of the microbial enzyme than the commercial detergent.
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Affiliation(s)
- Chellapandian Balachandran
- Department of Biotechnology, Thiagarajar College, Madurai 625 009, Tamil Nadu, India
- National Centre of Excellence (MHRD), Thiagarajar College, Madurai 625 009, Tamil Nadu, India
- Corresponding authors at: Department of Biotechnology, Thiagarajar College, Madurai 625 009, Tamil Nadu, India (Chellapandian Balachandran); Department of Ecotoxicology, Ross Lifescience, Pvt., Ltd., Bhosari, Pune, India (Kathirvelu Baskar).
| | - Alagumalai Vishali
- Department of Biotechnology, Thiagarajar College, Madurai 625 009, Tamil Nadu, India
| | - Natarajan Arun Nagendran
- National Centre of Excellence (MHRD), Thiagarajar College, Madurai 625 009, Tamil Nadu, India
- Department of Zoology, Thiagarajar College, Madurai 625 009, Tamil Nadu, India
| | - Kathirvelu Baskar
- Department of Ecotoxicology, Ross Lifescience, Pvt., Ltd., Bhosari, Pune, India
- Corresponding authors at: Department of Biotechnology, Thiagarajar College, Madurai 625 009, Tamil Nadu, India (Chellapandian Balachandran); Department of Ecotoxicology, Ross Lifescience, Pvt., Ltd., Bhosari, Pune, India (Kathirvelu Baskar).
| | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box. 2460, Riyadh 11451, Saudi Arabia
- Mycology and Plant Disease Survey Department, Plant Pathology Research Institute, ARC, Giza 12511, Egypt
| | - Elsayed Fathi Abd_Allah
- Plant Production Department, College of Food and Agricultural Sciences, King Saud University, P.O. Box. 2460, Riyadh 11451, Saudi Arabia
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de Oliveira BFR, Carr CM, Dobson ADW, Laport MS. Harnessing the sponge microbiome for industrial biocatalysts. Appl Microbiol Biotechnol 2020; 104:8131-8154. [PMID: 32827049 DOI: 10.1007/s00253-020-10817-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 07/29/2020] [Accepted: 08/05/2020] [Indexed: 12/31/2022]
Abstract
Within the marine sphere, host-associated microbiomes are receiving growing attention as prolific sources of novel biocatalysts. Given the known biocatalytic potential of poriferan microbial inhabitants, this review focuses on enzymes from the sponge microbiome, with special attention on their relevant properties and the wide range of their potential biotechnological applications within various industries. Cultivable bacterial and filamentous fungal isolates account for the majority of the enzymatic sources. Hydrolases, mainly glycoside hydrolases and carboxylesterases, are the predominant reported group of enzymes, with varying degrees of tolerance to alkaline pH and growing salt concentrations being common. Prospective areas for the application of these microbial enzymes include biorefinery, detergent, food and effluent treatment industries. Finally, alternative strategies to identify novel biocatalysts from the sponge microbiome are addressed, with an emphasis on modern -omics-based approaches that are currently available in the enzyme research arena. By providing this current overview of the field, we hope to not only increase the appetite of researchers to instigate forthcoming studies but also to stress how basic and applied research can pave the way for new biocatalysts from these symbiotic microbial communities in a productive fashion. KEY POINTS: • The sponge microbiome is a burgeoning source of industrial biocatalysts. • Sponge microbial enzymes have useful habitat-related traits for several industries. • Strategies are provided for the future discovery of microbial enzymes from sponges.
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Affiliation(s)
- Bruno Francesco Rodrigues de Oliveira
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. .,School of Microbiology, University College Cork, Cork, Ireland.
| | - Clodagh M Carr
- School of Microbiology, University College Cork, Cork, Ireland
| | - Alan D W Dobson
- School of Microbiology, University College Cork, Cork, Ireland.,Environmental Research Institute, University College Cork, Cork, Ireland
| | - Marinella Silva Laport
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
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Gimenes NC, Silveira E, Tambourgi EB. An Overview of Proteases: Production, Downstream Processes and Industrial Applications. SEPARATION & PURIFICATION REVIEWS 2019. [DOI: 10.1080/15422119.2019.1677249] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
| | - Edgar Silveira
- Biotechnology Institute, Federal University of Uberlandia, Uberlandia, Minas Gerais, Brazil
- Brazilian Savanna’s, Diversity Research Center, Federal University of Uberlandia, Uberlandia, Minas Gerais, Brazil
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Sathiyanarayanan G, Saibaba G, Kiran GS, Yang YH, Selvin J. Marine sponge-associated bacteria as a potential source for polyhydroxyalkanoates. Crit Rev Microbiol 2016; 43:294-312. [DOI: 10.1080/1040841x.2016.1206060] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Ganesan Sathiyanarayanan
- Department of Biological Engineering, College of Engineering, Konkuk University, Seoul, South Korea
| | - Ganesan Saibaba
- Centre for Pheromone Technology, Department of Animal Science, School of Life Sciences, Bharathidasan University, Tiruchirappalli, India
| | - George Seghal Kiran
- Department of Food Science and Technology, Pondicherry University, Kalapet, India
| | - Yung-Hun Yang
- Department of Biological Engineering, College of Engineering, Konkuk University, Seoul, South Korea
- Microbial Carbohydrate Resource Bank, Konkuk University, Seoul, South Korea
| | - Joseph Selvin
- Department of Microbiology, Pondicherry University, Kalapet, India
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Xiao YZ, Wu DK, Zhao SY, Lin WM, Gao XY. Statistical Optimization of Alkaline Protease Production fromPenicillium citrinumYL-1 Under Solid-State Fermentation. Prep Biochem Biotechnol 2014; 45:447-62. [DOI: 10.1080/10826068.2014.923450] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Meena P, Tripathi AD, Srivastava S, Jha A. Utilization of agro-industrial waste (wheat bran) for alkaline protease production by Pseudomonas aeruginosa in SSF using Taguchi (DOE) methodology. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2013. [DOI: 10.1016/j.bcab.2013.05.003] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Joshi S, Satyanarayana T. Biotechnology of cold-active proteases. BIOLOGY 2013; 2:755-83. [PMID: 24832807 PMCID: PMC3960895 DOI: 10.3390/biology2020755] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/05/2013] [Revised: 04/17/2013] [Accepted: 04/24/2013] [Indexed: 11/17/2022]
Abstract
The bulk of Earth's biosphere is cold (<5 °C) and inhabited by psychrophiles. Biocatalysts from psychrophilic organisms (psychrozymes) have attracted attention because of their application in the ongoing efforts to decrease energy consumption. Proteinases as a class represent the largest category of industrial enzymes. There has been an emphasis on employing cold-active proteases in detergents because this allows laundry operations at ambient temperatures. Proteases have been used in environmental bioremediation, food industry and molecular biology. In view of the present limited understanding and availability of cold-active proteases with diverse characteristics, it is essential to explore Earth's surface more in search of an ideal cold-active protease. The understanding of molecular and mechanistic details of these proteases will open up new avenues to tailor proteases with the desired properties. A detailed account of the developments in the production and applications of cold-active proteases is presented in this review.
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Affiliation(s)
- Swati Joshi
- Department of Microbiology, University of Delhi South Campus, New Delhi 110021, India.
| | - Tulasi Satyanarayana
- Department of Microbiology, University of Delhi South Campus, New Delhi 110021, India.
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Jayakumar R, Jayashree S, Annapurna B, Seshadri S. Characterization of Thermostable Serine Alkaline Protease from an Alkaliphilic Strain Bacillus pumilus MCAS8 and Its Applications. Appl Biochem Biotechnol 2012; 168:1849-66. [DOI: 10.1007/s12010-012-9902-6] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2011] [Accepted: 09/18/2012] [Indexed: 11/29/2022]
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Zhao K, Guo LZ, Lu WD. Extracellular Production of Novel Halotolerant, Thermostable, and Alkali-Stable Carboxymethyl Cellulase by Marine Bacterium Marinimicrobium sp. LS-A18. Appl Biochem Biotechnol 2012; 168:550-67. [DOI: 10.1007/s12010-012-9796-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2012] [Accepted: 07/03/2012] [Indexed: 01/25/2023]
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Queiroga AC, Pintado ME, Malcata FX. Search for novel proteolytic enzymes aimed at textile and agro-industrial applications: An overview of current and novel approaches. BIOCATAL BIOTRANSFOR 2012. [DOI: 10.3109/10242422.2012.650856] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Thumar JT, Singh SP. Repression of alkaline protease in salt-tolerant alkaliphilic Streptomyces clavuligerus strain Mit-1 under the influence of amino acids in minimal medium. BIOTECHNOL BIOPROC E 2011. [DOI: 10.1007/s12257-009-0087-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Bezawada J, Yan S, John RP, Tyagi RD, Surampalli RY. Recovery of Bacillus licheniformis Alkaline Protease from Supernatant of Fermented Wastewater Sludge Using Ultrafiltration and Its Characterization. BIOTECHNOLOGY RESEARCH INTERNATIONAL 2011; 2011:238549. [PMID: 21876816 PMCID: PMC3160599 DOI: 10.4061/2011/238549] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2011] [Revised: 04/30/2011] [Accepted: 05/03/2011] [Indexed: 11/29/2022]
Abstract
Investigation on recovery of alkaline protease from B. licheniformis ATCC 21424 fermented wastewater sludge was carried out by centrifugation and ultrafiltration. Optimization of ultrafiltration parameters (transmembrane pressure (TMP) and feed flux) was carried out with 10 kDa membrane. TMP of 90 kPa and feed flux of 714 L/h/m2 gave highest recovery (83%) of the enzyme from the centrifuged supernatant. The recovered enzyme had given maximum activity at temperature of 60°C and at pH 10. It was stable between pH 8 to 10 and retained 97% activity at 60°C after 180 min of incubation. Enzyme activity was significantly augmented by metal ions like Ca2+ and Mn2+. Protease inhibitors like phenylmethyl sulphonyl fluoride (PMSF) and diisopropyl fluorophosphates (DFPs) completely inhibited the enzyme activity. The partially purified protease showed excellent stability and compatibility with various commercial detergents. The detergent (Sunlight) removed the blood stains effectively along with the enzyme as additive.
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Affiliation(s)
- Jyothi Bezawada
- INRS-ETE, Université du Québec, 490, Rue de la Couronne, QC, Canada G1K 9A9
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Kasana RC, Salwan R, Yadav SK. Microbial proteases: Detection, production, and genetic improvement. Crit Rev Microbiol 2011; 37:262-76. [DOI: 10.3109/1040841x.2011.577029] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Selvin J, Ninawe A, Seghal Kiran G, Lipton A. Sponge-microbial interactions: Ecological implications and bioprospecting avenues. Crit Rev Microbiol 2010; 36:82-90. [DOI: 10.3109/10408410903397340] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Kiran GS, Hema T, Gandhimathi R, Selvin J, Thomas TA, Rajeetha Ravji T, Natarajaseenivasan K. Optimization and production of a biosurfactant from the sponge-associated marine fungus Aspergillus ustus MSF3. Colloids Surf B Biointerfaces 2009; 73:250-6. [DOI: 10.1016/j.colsurfb.2009.05.025] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2009] [Revised: 04/23/2009] [Accepted: 05/25/2009] [Indexed: 10/20/2022]
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Optimization, Purification, and Characterization of Extracellular Mesophilic Alkaline Cellulase from Sponge-Associated Marinobacter sp. MSI032. Appl Biochem Biotechnol 2009; 162:625-40. [DOI: 10.1007/s12010-009-8747-0] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2009] [Accepted: 08/10/2009] [Indexed: 10/20/2022]
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Characterization of a thermostable alkaline protease produced by marine Streptomyces fungicidicus MML1614. Bioprocess Biosyst Eng 2009; 32:791-800. [PMID: 19234861 DOI: 10.1007/s00449-009-0305-1] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2008] [Accepted: 01/30/2009] [Indexed: 10/21/2022]
Abstract
Totally 191 different marine actinomycetes were isolated from 256 different marine samples collected from the Bay of Bengal and its associated Pulicat lake and Pichavaram mangrove, India. Among them, 157 produced caseinase, 113 produced gelatinase and 108 produced both the protease enzymes. An isolate coded as MML1614 was selected for further study as it exhibited high proteolytic activity. The MML1614 was identified as Streptomyces fungicidicus based on polyphasic taxonomical approach including 16S rRNA sequence analysis. The culture conditions were standardized for the growth and protease production in S. fungicidicus MML1614. The protease was isolated from a 6-day-old culture filtrate of S. fungicidicus MML1614 and partially purified up to 4.5-fold. The protease was optimally active at pH 9 and 40 degrees C and it was stable up to pH 11 and 60 degrees C. PMSF and NaCl inhibited the enzyme activity up to 22 and 11%, respectively. The partially purified protease removed the blood stain more effectively when combined with different detergents than the detergents alone.
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