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Kleikamp HBC, Grouzdev D, Schaasberg P, van Valderen R, van der Zwaan R, Wijgaart RVD, Lin Y, Abbas B, Pronk M, van Loosdrecht MCM, Pabst M. Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome. WATER RESEARCH 2023; 246:120700. [PMID: 37866247 DOI: 10.1016/j.watres.2023.120700] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 09/29/2023] [Accepted: 10/04/2023] [Indexed: 10/24/2023]
Abstract
The tremendous progress in sequencing technologies has made DNA sequencing routine for microbiome studies. Additionally, advances in mass spectrometric techniques have extended conventional proteomics into the field of microbial ecology. However, systematic studies that provide a better understanding of the complementary nature of these 'omics' approaches, particularly for complex environments such as wastewater treatment sludge, are urgently needed. Here, we describe a comparative metaomics study on aerobic granular sludge from three different wastewater treatment plants. For this, we employed metaproteomics, whole metagenome, and 16S rRNA amplicon sequencing to study the same granule material with uniform size. We furthermore compare the taxonomic profiles using the Genome Taxonomy Database (GTDB) to enhance the comparability between the different approaches. Though the major taxonomies were consistently identified in the different aerobic granular sludge samples, the taxonomic composition obtained by the different omics techniques varied significantly at the lower taxonomic levels, which impacts the interpretation of the nutrient removal processes. Nevertheless, as demonstrated by metaproteomics, the genera that were consistently identified in all techniques cover the majority of the protein biomass. The established metaomics data and the contig classification pipeline are publicly available, which provides a valuable resource for further studies on metabolic processes in aerobic granular sludge.
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Affiliation(s)
- Hugo B C Kleikamp
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands.
| | | | - Pim Schaasberg
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Ramon van Valderen
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Ramon van der Zwaan
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Roel van de Wijgaart
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Yuemei Lin
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Ben Abbas
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | - Mario Pronk
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
| | | | - Martin Pabst
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands.
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Ma J, Ji Y, Fu Z, Yan X, Xu P, Li J, Liu L, Bi P, Zhu L, Xu B, He Q. Performance of anaerobic/oxic/anoxic simultaneous nitrification, denitrification and phosphorus removal system overwhelmingly dominated by Candidatus_Competibacter: Effect of aeration time. BIORESOURCE TECHNOLOGY 2023:129312. [PMID: 37307956 DOI: 10.1016/j.biortech.2023.129312] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 06/03/2023] [Accepted: 06/08/2023] [Indexed: 06/14/2023]
Abstract
The anaerobic/oxic/anoxic simultaneous nitrification, denitrification and phosphorus removal process (AOA-SNDPR) is a promising technology for enhanced biological wastewater treatment and in situ sludge reduction. Herein, the effects of aeration time (90, 75, 60, 45, and 30 min, respectively) on AOA-SNDPR were evaluated including simultaneous nutrients removal, sludge characteristics, and microbial community evolution, where the role of a denitrifying glycogen accumulating organisms, Candidatus_Competibacter, was re-explored given its overwhelming dominance. Results revealed that nitrogen removal was more vulnerable, and a moderate aeration period of 45-60 min mostly favored nutrients removal. Low observed sludge yields (Yobs) were obtained with decreased aeration (as low as 0.02 g MLSS/g COD), while MLVSS/MLSS got increased. The dominance of Candidatus_Competibacter was proven to be the key to endogenous denitrifying and in situ sludge reduction. This study would aid the more carbon- and energy-efficient aeration strategy for AOA-SNDPR systems treating low-strength municipal wastewater.
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Affiliation(s)
- Jingwei Ma
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Yaning Ji
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Zhidong Fu
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Xiaohui Yan
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Peng Xu
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Jinfeng Li
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Liang Liu
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Peng Bi
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Liang Zhu
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China
| | - Baokun Xu
- Agricultural Water Conservancy Department, Changjiang River Scientific Research Institute, Wuhan 430010, China
| | - Qiulai He
- Hunan Engineering Research Center of Water Security Technology and Application, College of Civil Engineering, Hunan University, Changsha 410082, China; Key Laboratory of Building Safety and Energy Efficiency, Ministry of Education, Hunan University, Changsha 410082, China.
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Shuai J, Hu X, Wang B, Lyu W, Chen R, Guo W, Wang H, Zhou D. Response of aerobic sludge to AHL-mediated QS: Granulation, simultaneous nitrogen and phosphorus removal performance. CHINESE CHEM LETT 2021. [DOI: 10.1016/j.cclet.2021.04.061] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Zhang H, Gong W, Zeng W, Chen R, Lin D, Li G, Liang H. Bacterial-algae biofilm enhance MABR adapting a wider COD/N ratios wastewater: Performance and mechanism. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 781:146663. [PMID: 33812123 DOI: 10.1016/j.scitotenv.2021.146663] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 03/14/2021] [Accepted: 03/17/2021] [Indexed: 06/12/2023]
Abstract
Although membrane aerated biofilm reactor (MABR) is promising in nitrogen removal due to its counter-diffusion biofilms structure, it still cannot adapt a wider COD/N ratios wastewater. In this condition, expanding the MABR applicability range in different COD/N ratio wastewater is necessary. In this study, a bacterial-algae biofilm, instead of bacteria biofilm, supporting membrane aerated biofilm reactor (MABAR) was constructed, and the performance was compared to MABR. Results showed that the total nitrogen (TN) removal efficiency was promoted significantly in MABAR regardless of the COD/N ratio. Compared to MABR, effluent TN concentration in COD/N ratio of 2, 5, and 8 declined by 14.34 mg/L, 0.50 mg/L, and 12.10 mg/L, respectively. Nitrification inhibition test suggested that algae assimilation made an obvious contribution (at least 18.18 mg/L) to the NH4+-N removal in MABAR. Besides, redundancy analysis (RDA) indicates that MABAR has a negative correlation with Nitrospirae but is positively correlated with NH4+-N removal load. These results are consistent with the kinetics result that algae assimilation, instead of nitrification-denitrification, is responsible for the nitrogen removal in MABAR. Therefore, the change of nitrogen removal route further gave MABAR excellent adaptability and impact resistance to address wastewater with different COD/N ratios, which is conducive to its wide application.
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Affiliation(s)
- Han Zhang
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China
| | - Weijia Gong
- School of Engineering, Northeast Agricultural University, 600 Changjiang Street, Xiangfang District, Harbin 150030, PR China
| | - WeiChen Zeng
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China
| | - Rui Chen
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China
| | - Dachao Lin
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China
| | - Guibai Li
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China
| | - Heng Liang
- State Key Laboratory of Urban Water Resource and Environment (SKLUWRE), Harbin Institute of Technology, 73 Huanghe Road, Nangang District, Harbin 150090, PR China.
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Characteristics of nutrients removal under partial denitrification initiated by different initial nitrate concentration. Bioprocess Biosyst Eng 2021; 44:2051-2059. [PMID: 33993384 DOI: 10.1007/s00449-021-02582-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 05/02/2021] [Indexed: 10/21/2022]
Abstract
The partial denitrification (PD) is a very promising process developed in the last decade, to study the comprehensive influence of influent carbon to nitrogen (C/N) on the activated sludge system under PD, six sequencing batch reactors (SBRs) were operated in parallel at C/N of 2.75, 3.30, 4.13, 5.50, 8.25 and 16.50, the nitrogen removal, phosphorus removal and sludge settleability of PD were investigated. The results showed that PD was observed treating synthetic wastewater in all the six SBRs, and the nitrite accumulation rate (NAR) was highest at C/N of 5.50 (NAR of 82.30%). However, due to the alternate inhibition of NO2--N and free nitrous acid (FNA) produced by a limited carbon source, both the sludge settleability and phosphorus removal deteriorated. The average SVI at C/N of 8.25 was 130% lower than C/N of 3.30, and the average amount of PO43--P released at C/N of 16.5 was 189% higher than C/N of 2.75. Kinetic analysis showed that the denitrification kinetics of PD and complete denitrification were similar, and the nitrite accumulation was caused by the difference between nitrate reduction rate and nitrite reduction rate. Variations of on-line parameters (pH and ORP) revealed that nitrite accumulation could be indicated by judging the nitrate turning point and nitrite turning point on pH and ORP curves, which provided guidance for the setup of PD.
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Adler A, Holliger C. Multistability and Reversibility of Aerobic Granular Sludge Microbial Communities Upon Changes From Simple to Complex Synthetic Wastewater and Back. Front Microbiol 2020; 11:574361. [PMID: 33324361 PMCID: PMC7726351 DOI: 10.3389/fmicb.2020.574361] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 10/12/2020] [Indexed: 01/31/2023] Open
Abstract
Aerobic granular sludge (AGS) is a promising alternative wastewater treatment to the conventional activated sludge system allowing space and energy saving. Basic understanding of AGS has mainly been obtained using simple wastewater containing acetate and propionate as carbon source. Yet, the aspect and performances of AGS grown in such model systems are different from those obtained in reactor treating real wastewater. The impact of fermentable and hydrolyzable compounds on already formed AGS was assessed separately by changing the composition of the influent from simple wastewater containing volatile fatty acids to complex monomeric wastewater containing amino acids and glucose, and then to complex polymeric wastewater containing also starch and peptone. The reversibility of the observed changes was assessed by changing the composition of the wastewater from complex monomeric back to simple. The introduction of fermentable compounds in the influent left the settling properties and nutrient removal performance unchanged, but had a significant impact on the bacterial community. The proportion of Gammaproteobacteria diminished to the benefit of Actinobacteria and the Saccharibateria phylum. On the other hand, the introduction of polymeric compounds altered the settling properties and denitrification efficiency, but induced smaller changes in the bacterial community. The changes induced by the wastewater transition were only partly reversed. Seven distinct stables states of the bacterial community were detected during the 921 days of experiment, four of them observed with the complex monomeric wastewater. The transitions between these states were not only caused by wastewater changes but also by operation failures and other incidences. However, the nutrient removal performance and settling properties of the AGS were globally maintained due to the functional redundancy of its bacterial community.
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Affiliation(s)
- Aline Adler
- Laboratory for Environmental Biotechnology, School for Architecture, Civil and Environmental Engineering, Environmental Engineering Institute, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
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Domingos DG, Libardi N, Henriques RO, Xavier JA, da Costa RHR. The effect of Np-magnetite on the granulation process of an SBR reactor used for domestic wastewater treatment. Bioprocess Biosyst Eng 2020; 44:161-171. [PMID: 32862326 DOI: 10.1007/s00449-020-02432-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 08/18/2020] [Indexed: 11/29/2022]
Abstract
This study investigated the effect of magnetite nanoparticles (Np-magnetite) added to a pilot-scale sequencing batch reactor (SBR) treating domestic wastewater, to improve aerobic granular sludge (AGS) formation and the effects of granule disintegration. Np-magnetite additions (75 mg L-1) were made during the start-up of the reactor and repeated after 100 and 170 days, when granule disintegration was observed. From the first Np-magnetite addition, SVI5 was reduced from 1315 to 85 mL g-1. The granular biomass was observed on the 56th day, when 57% of the granules presented diameters bigger than 212 µm. The 100-day disintegration episode disturbed the granular biomass, reducing the volatile suspended solids by 51%, increasing the SVI values to above 200 mL g-1. Np-magnetite addition recovered all the granular biomass parameters to the values observed before disintegration. The treatment efficiency was stable during operation of the reactor for nutrients (52.8 ± 23.4% NH4+-N; 54.5 ± 12.2% PO43--P) and carbonaceous organic matter (71.7 ± 12.7% BOD5; 77.5 ± 10.0% CODt). Np-magnetite addition changed the microbial community of the granular sludge, analysed via high-throughput 16S RNA sequencing, and recovered the treatment efficiency previously disturbed by the disintegration processes. These results indicate the potential of Np-magnetite as an agent for sludge aggregation in an aerobic granular reactor.
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Affiliation(s)
- Dayane Gonzaga Domingos
- Department of Sanitary and Environmental Engineering, Federal University of Santa Catarina-UFSC, Florianópolis, 88040-970, Brazil.
| | - Nelson Libardi
- Department of Sanitary and Environmental Engineering, Federal University of Santa Catarina-UFSC, Florianópolis, 88040-970, Brazil
| | - Rosana Oliveira Henriques
- Department of Chemical Engineering, Federal University of Santa Catarina-UFSC, Florianópolis, 88040-970, Brazil
| | - Jéssica Antunes Xavier
- Department of Sanitary and Environmental Engineering, Federal University of Santa Catarina-UFSC, Florianópolis, 88040-970, Brazil
| | - Rejane Helena Ribeiro da Costa
- Department of Sanitary and Environmental Engineering, Federal University of Santa Catarina-UFSC, Florianópolis, 88040-970, Brazil
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