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Guo M, Wang Y, Yang Q, Li R, Zhao Y, Li C, Zhu M, Cui Y, Jiang X, Sheng S, Li Q, Gao R. Normal Workflow and Key Strategies for Data Cleaning Toward Real-World Data: Viewpoint. Interact J Med Res 2023; 12:e44310. [PMID: 37733421 PMCID: PMC10557005 DOI: 10.2196/44310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/30/2023] [Accepted: 05/09/2023] [Indexed: 09/22/2023] Open
Abstract
With the rapid development of science, technology, and engineering, large amounts of data have been generated in many fields in the past 20 years. In the process of medical research, data are constantly generated, and large amounts of real-world data form a "data disaster." Effective data analysis and mining are based on data availability and high data quality. The premise of high data quality is the need to clean the data. Data cleaning is the process of detecting and correcting "dirty data," which is the basis of data analysis and management. Moreover, data cleaning is a common technology for improving data quality. However, the current literature on real-world research provides little guidance on how to efficiently and ethically set up and perform data cleaning. To address this issue, we proposed a data cleaning framework for real-world research, focusing on the 3 most common types of dirty data (duplicate, missing, and outlier data), and a normal workflow for data cleaning to serve as a reference for the application of such technologies in future studies. We also provided relevant suggestions for common problems in data cleaning.
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Affiliation(s)
- Manping Guo
- Postdoctoral Research Station, China Academy of Chinese Medical Sciences, Beijing, China
- Postdoctoral Works Station, Yabao Pharmaceutical Group Co, Ltd, Yuncheng, China
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yiming Wang
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Qiaoning Yang
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Rui Li
- First Affiliated Hospital, Henan University of Traditional Chinese Medicine, Zhenzhou, China
| | - Yang Zhao
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Chenfei Li
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Mingbo Zhu
- Beijing Xinshi Yuanzhi Technology Consulting Co, Ltd, Beijing, China
| | - Yao Cui
- Beijing Xinshi Yuanzhi Technology Consulting Co, Ltd, Beijing, China
| | - Xin Jiang
- Beijing Xinshi Yuanzhi Technology Consulting Co, Ltd, Beijing, China
| | - Song Sheng
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Qingna Li
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
| | - Rui Gao
- Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China
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