COVID-19 diagnosis on CT images with Bayes optimization-based deep neural networks and machine learning algorithms

A Systematic Review on Deep Structured Learning for COVID-19 Screening Using Chest CT from 2020 to 2022

The emergence of the COVID-19 pandemic in Wuhan in 2019 led to the discovery of a novel coronavirus. The World Health Organization (WHO) designated it as a global pandemic on 11 March 2020 due to its rapid and widespread transmission. Its impact has had profound implications, particularly in the realm of public health. Extensive scientific endeavors have been directed towards devising effective treatment strategies and vaccines. Within the healthcare and medical imaging domain, the application of artificial intelligence (AI) has brought significant advantages. This study delves into peer-reviewed research articles spanning the years 2020 to 2022, focusing on AI-driven methodologies for the analysis and screening of COVID-19 through chest CT scan data. We assess the efficacy of deep learning algorithms in facilitating decision making processes. Our exploration encompasses various facets, including data collection, systematic contributions, emerging techniques, and encountered challenges. However, the comparison of outcomes between 2020 and 2022 proves intricate due to shifts in dataset magnitudes over time. The initiatives aimed at developing AI-powered tools for the detection, localization, and segmentation of COVID-19 cases are primarily centered on educational and training contexts. We deliberate on their merits and constraints, particularly in the context of necessitating cross-population train/test models. Our analysis encompassed a review of 231 research publications, bolstered by a meta-analysis employing search keywords (COVID-19 OR Coronavirus) AND chest CT AND (deep learning OR artificial intelligence OR medical imaging) on both the PubMed Central Repository and Web of Science platforms.

Developing a Deep Neural Network model for COVID-19 diagnosis based on CT scan images

COVID-19 is most commonly diagnosed using a testing kit but chest X-rays and computed tomography (CT) scan images have a potential role in COVID-19 diagnosis. Currently, CT diagnosis systems based on Artificial intelligence (AI) models have been used in some countries. Previous research studies used complex neural networks, which led to difficulty in network training and high computation rates. Hence, in this study, we developed the 6-layer Deep Neural Network (DNN) model for COVID-19 diagnosis based on CT scan images. The proposed DNN model is generated to improve accurate diagnostics for classifying sick and healthy persons. Also, other classification models, such as decision trees, random forests and standard neural networks, have been investigated. One of the main contributions of this study is the use of the global feature extractor operator for feature extraction from the images. Furthermore, the 10-fold cross-validation technique is utilized for partitioning the data into training, testing and validation. During the DNN training, the model is generated without dropping out of neurons in the layers. The experimental results of the lightweight DNN model demonstrated that this model has the best accuracy of 96.71% compared to the previous classification models for COVID-19 diagnosis.

A new classification method for diagnosing COVID-19 pneumonia based on joint CNN features of chest X-ray images and parallel pyramid MLP-mixer module

During the past three years, the coronavirus disease 2019 (COVID-19) has swept the world. The rapid and accurate recognition of covid-19 pneumonia are ,therefore, of great importance. To handle this problem, we propose a new pipeline of deep learning framework for diagnosing COVID-19 pneumonia via chest X-ray images from normal, COVID-19, and other pneumonia patients. In detail, the self-trained YOLO-v4 network was first used to locate and segment the thoracic region, and the output images were scaled to the same size. Subsequently, the pre-trained convolutional neural network was adopted to extract the features of X-ray images from 13 convolutional layers, which were fused with the original image to form a 14-dimensional image matrix. It was then put into three parallel pyramid multi-layer perceptron (MLP)-Mixer modules for comprehensive feature extraction through spatial fusion and channel fusion based on different scales so as to grasp more extensive feature correlation. Finally, by combining all image features from the 14-channel output, the classification task was achieved using two fully connected layers as well as Softmax classifier for classification. Extensive simulations based on a total of 4099 chest X-ray images were conducted to verify the effectiveness of the proposed method. Experimental results indicated that our proposed method can achieve the best performance in almost all cases, which is good for auxiliary diagnosis of COVID-19 and has great clinical application potential.

Automated semantic lung segmentation in chest CT images using deep neural network

Lung segmentation algorithms play a significant role in segmenting theinfected regions in the lungs. This work aims to develop a computationally efficient and robust deep learning model for lung segmentation using chest computed tomography (CT) images with DeepLabV3 + networks for two-class (background and lung field) and four-class (ground-glass opacities, background, consolidation, and lung field). In this work, we investigate the performance of the DeepLabV3 + network with five pretrained networks: Xception, ResNet-18, Inception-ResNet-v2, MobileNet-v2 and ResNet-50. A publicly available database for COVID-19 that contains 750 chest CT images and corresponding pixel-labeled images are used to develop the deep learning model. The segmentation performance has been assessed using five performance measures: Intersection of Union (IoU), Weighted IoU, Balance F1 score, pixel accu-racy, and global accuracy. The experimental results of this work confirm that the DeepLabV3 + network with ResNet-18 and a batch size of 8 have a higher performance for two-class segmentation. DeepLabV3 + network coupled with ResNet-50 and a batch size of 16 yielded better results for four-class segmentation compared to other pretrained networks. Besides, the ResNet with a fewer number of layers is highly adequate for developing a more robust lung segmentation network with lesser computational complexity compared to the conventional DeepLabV3 + network with Xception. This present work proposes a unified DeepLabV3 + network to delineate the two and four different regions automatically using CT images for CoVID-19 patients. Our developed automated segmented model can be further developed to be used as a clinical diagnosis system for CoVID-19 as well as assist clinicians in providing an accurate second opinion CoVID-19 diagnosis.

Novel Light Convolutional Neural Network for COVID Detection with Watershed Based Region Growing Segmentation

A rapidly spreading epidemic, COVID-19 had a serious effect on millions and took many lives. Therefore, for individuals with COVID-19, early discovery is essential for halting the infection's progress. To quickly and accurately diagnose COVID-19, imaging modalities, including computed tomography (CT) scans and chest X-ray radiographs, are frequently employed. The potential of artificial intelligence (AI) approaches further explored the creation of automated and precise COVID-19 detection systems. Scientists widely use deep learning techniques to identify coronavirus infection in lung imaging. In our paper, we developed a novel light CNN model architecture with watershed-based region-growing segmentation on Chest X-rays. Both CT scans and X-ray radiographs were employed along with 5-fold cross-validation. Compared to earlier state-of-the-art models, our model is lighter and outperformed the previous methods by achieving a mean accuracy of 98.8% on X-ray images and 98.6% on CT scans, predicting the rate of 0.99% and 0.97% for PPV (Positive predicted Value) and NPV (Negative predicted Value) rate of 0.98% and 0.99%, respectively.

COVID-19 classification using chest X-ray images based on fusion-assisted deep Bayesian optimization and Grad-CAM visualization

The COVID-19 virus's rapid global spread has caused millions of illnesses and deaths. As a result, it has disastrous consequences for people's lives, public health, and the global economy. Clinical studies have revealed a link between the severity of COVID-19 cases and the amount of virus present in infected people's lungs. Imaging techniques such as computed tomography (CT) and chest x-rays can detect COVID-19 (CXR). Manual inspection of these images is a difficult process, so computerized techniques are widely used. Deep convolutional neural networks (DCNNs) are a type of machine learning that is frequently used in computer vision applications, particularly in medical imaging, to detect and classify infected regions. These techniques can assist medical personnel in the detection of patients with COVID-19. In this article, a Bayesian optimized DCNN and explainable AI-based framework is proposed for the classification of COVID-19 from the chest X-ray images. The proposed method starts with a multi-filter contrast enhancement technique that increases the visibility of the infected part. Two pre-trained deep models, namely, EfficientNet-B0 and MobileNet-V2, are fine-tuned according to the target classes and then trained by employing Bayesian optimization (BO). Through BO, hyperparameters have been selected instead of static initialization. Features are extracted from the trained model and fused using a slicing-based serial fusion approach. The fused features are classified using machine learning classifiers for the final classification. Moreover, visualization is performed using a Grad-CAM that highlights the infected part in the image. Three publically available COVID-19 datasets are used for the experimental process to obtain improved accuracies of 98.8, 97.9, and 99.4%, respectively.

Topology optimization search of deep convolution neural networks for CT and X-ray image classification

Covid-19 is a disease that can lead to pneumonia, respiratory syndrome, septic shock, multiple organ failure, and death. This pandemic is viewed as a critical component of the fight against an enormous threat to the human population. Deep convolutional neural networks have recently proved their ability to perform well in classification and dimension reduction tasks. Selecting hyper-parameters is critical for these networks. This is because the search space expands exponentially in size as the number of layers increases. All existing approaches utilize a pre-trained or designed architecture as an input. None of them takes design and pruning into account throughout the process. In fact, there exists a convolutional topology for any architecture, and each block of a CNN corresponds to an optimization problem with a large search space. However, there are no guidelines for designing a specific architecture for a specific purpose; thus, such design is highly subjective and heavily reliant on data scientists’ knowledge and expertise. Motivated by this observation, we propose a topology optimization method for designing a convolutional neural network capable of classifying radiography images and detecting probable chest anomalies and infections, including COVID-19. Our method has been validated in a number of comparative studies against relevant state-of-the-art architectures.

Joint design and compression of convolutional neural networks as a Bi-level optimization problem

Over the last decade, deep neural networks have shown great success in the fields of machine learning and computer vision. Currently, the CNN (convolutional neural network) is one of the most successful networks, having been applied in a wide variety of application domains, including pattern recognition, medical diagnosis and signal processing. Despite CNNs' impressive performance, their architectural design remains a significant challenge for researchers and practitioners. The problem of selecting hyperparameters is extremely important for these networks. The reason for this is that the search space grows exponentially in size as the number of layers increases. In fact, all existing classical and evolutionary pruning methods take as input an already pre-trained or designed architecture. None of them take pruning into account during the design process. However, to evaluate the quality and possible compactness of any generated architecture, filter pruning should be applied before the communication with the data set to compute the classification error. For instance, a medium-quality architecture in terms of classification could become a very light and accurate architecture after pruning, and vice versa. Many cases are possible, and the number of possibilities is huge. This motivated us to frame the whole process as a bi-level optimization problem where: (1) architecture generation is done at the upper level (with minimum NB and NNB) while (2) its filter pruning optimization is done at the lower level. Motivated by evolutionary algorithms' (EAs) success in bi-level optimization, we use the newly suggested co-evolutionary migration-based algorithm (CEMBA) as a search engine in this research to address our bi-level architectural optimization problem. The performance of our suggested technique, called Bi-CNN-D-C (Bi-level convolution neural network design and compression), is evaluated using the widely used benchmark data sets for image classification, called CIFAR-10, CIFAR-100 and ImageNet. Our proposed approach is validated by means of a set of comparative experiments with respect to relevant state-of-the-art architectures.