An ultrasensitive conformation-dependent colorimetric probe for the detection of mercury(II) using exonuclease III-assisted target recycling and gold nanoparticles

Recent Trends and Future Perspectives of Emergent Analytical Techniques for Mercury Sensing in Aquatic Environments

Environmental emissions of mercury from industrial waste and natural sources, even in trace amounts, are toxic to organisms and ecosystems. However, industrial-scale mercury detection is limited by the high cost, low sensitivity/specificity, and poor selectivity of the available analytical tools. This review summarizes the key sensors for mercury detection in aqueous environments: colorimetric-, electrochemical-, fluorescence-, and surface-enhanced Raman spectroscopy-based sensors reported between 2014-2021. It then compares the performances of these sensors in the determination of inorganic mercury (Hg²⁺ ) and methyl mercury (CH₃ Hg⁺ ) species in aqueous samples. Mercury sensors for aquatic applications still face serious challenges in terms of difficult deployment in remote areas and low robustness, reliability, and selectivity in harsh environments. We provide future perspectives on the selective detection of organomercury species, which are especially toxic and reactive in aquatic environments. This review is intended as a valuable resource for scientists in the field of mercury sensing.

Construction of DNA Biosensors for Mercury (II) Ion Detection Based on Enzyme-Driven Signal Amplification Strategy

Mercury ion (Hg²⁺) is a well-known toxic heavy metal ion. It is harmful for human health even at low concentrations in the environment. Therefore, it is very important to measure the level of Hg²⁺. Many methods, reviewed in several papers, have been established on DNA biosensors for detecting Hg²⁺. However, few reviews on the strategy of enzyme-driven signal amplification have been reported. In this paper, we reviewed this topic by dividing the enzymes into nucleases and DNAzymes according to their chemical nature. Initially, we introduce the nucleases including Exo III, Exo I, Nickase, DSN, and DNase I. In this section, the Exo III-driven signal amplification strategy was described in detail. Because Hg²⁺ can help ssDNA fold into dsDNA by T-Hg-T, and the substrate of Exo III is dsDNA, Exo III can be used to design Hg²⁺ biosensor very flexibly. Then, the DNAzyme-assisted signal amplification strategies were reviewed in three categories, including UO₂²⁺-specific DNAzymes, Cu²⁺-specific DNAzymes and Mg²⁺-specific DNAzymes. In this section, the Mg²⁺-specific DNAzyme was introduced in detail, because this DNAzyme has highly catalytic activity, and Mg²⁺ is very common ion which is not harmful to the environment. Finally, the challenges and future perspectives were discussed.

Ultrasensitive colorimetric aptasensor for Hg2+ detection using Exo-III assisted target recycling amplification and unmodified AuNPs as indicators

Facile and ultrasensitive detection of Hg²⁺ in water environment remains challenging. Exonuclease III (Exo-III)-assisted target recycling is one of the most popular amplification strategies. Although the magnesium (II) ions are widely acting as cofactors of Exo-III, we recognized that Mg²⁺ cofactors would strongly disturb the charge distribution on citrate-stablized gold nanoparticles (in the general sense, unmodified AuNPs) surface, thus generate false positive colorimetric signals. To address this issue, we first put forward the view that the cobalt (II) ions can function as the Exo-III cofactor and successfully construct a novel label-free colorimetric aptasensor for facile and ultrasensitive detection of Hg²⁺ using Hg²⁺-triggered Exo-III-assisted signal amplification and unmodified AuNPs as indicators. A hairpin-looped DNA probe was rationally designed with thymine-rich recognition termini and specifically recognized trace Hg²⁺ by a stable T-Hg²⁺-T structure. A blue-to-red color change of AuNPs with the addition of Hg²⁺ provided the quantitative detection of Hg²⁺ with a limit of detection of 0.2 nM and a linear working range from 0.5 nM to 5.0 nM. The whole testing time for one assay was approximately 40 min. Real water samples, even containing Hg²⁺ at 1 nM, could be determined by the aptasensor with recovery rates from 97% to 103%.

Optical aptasensing of mercury(II) by using salt-induced and exonuclease I-induced gold nanoparticle aggregation under dark-field microscope observation

An optical method for determination of Hg(II) is described that exploits the aggregation of gold nanoparticles (AuNPs) under dark-field microscope (DFM) observation. This assay is based on the use of a Hg(II)-specific aptamer, AuNPs modified with complementary DNA strands, and exonuclease I (Exo I). In the absence of Hg(II), the added dsDNA prevents salt-induced aggregation of the green-colored AuNPs. If Hg(II) is added, the aptamer will capture it to form T-Hg(II)-T pairs, and the complementary strand is digested by Exo I. On addition of a solution of NaCl, the AuNPs will aggregate. This is accompanied by a color change from green to orange/red) in the dark-field image. By calculating the intensity of the orange/red dots in the dark-field image, concentration of Hg(II) can be accurately determined. The limit of detection is as low as 36 fM, and response is a linear in the 83 fM to 8.3 μM Hg(II) concentration range. Graphical abstract Schematic representation of a colorimetric assay for Hg(II) based on the use of a mercury(II)-specific aptamer, gold nanoparticles modified with complementary DNA strands, and exonuclease I.

Fluorometric determination of mercury(II) using positively charged gold nanoparticles, DNA-templated silver nanoclusters, T-Hg(II)-T interaction and exonuclease assisted signal amplification

The authors describe a method for detection of Hg²⁺ by using positively charged gold nanoparticles ((+)AuNPs) as a quencher of the fluorescence of DNA-capped silver nanoclusters (DNA-AgNCs) which are negatively charged. In the presence of Hg²⁺, a DNA duplex is formed through T-Hg²⁺-T coordination chemistry. The duplex can be digested by exonuclease III to form smaller DNA fragments. This leads to the release of the AgNCs and the recovery of fluorescence, best measured at excitation/emission wavelengths of 460/530 nm. The (+)AuNPs and Hg²⁺ are also released and can be reused for target recycling signal amplification. Based on these findings, a method is worked out for the determination of Hg²⁺ that works in the 5.0 pM to 10 nM concentration range and has a detection limit as low as 2.3 pM. It is highly selective because of the highly specific formation of T-Hg²⁺-T bonds. Graphical abstract By using ultrastable and positively charged gold nanoparticles as fluorescence quenchers and exonuclease assisted signal amplification, a method is developed for the sensitive and selective detection of Hg²⁺ in water samples.

Fluorometric determination of mercury(II) via a graphene oxide-based assay using exonuclease III-assisted signal amplification and thymidine-Hg(II)-thymidine interaction

A highly sensitive and selective fluorometric method is described for determination of mercury(II). It is based on (a) the use of graphene oxide (GO) acting as a quencher of the fluoresence of the carboxy-fluorescein (FAM), and (b) of Hg(II)-triggered cleavage of the newly formed nucleic acid sequences harbored blunt 3'-hydroxyl termini by exonuclease III (Exo III) that leads to signal amplification. Two DNA probes are used, viz. a capture probe (CP) and a help probe; HP) that is partially complementary. In the absence of Hg(II), the FAM-labeled hairpin (signal probe, SP) is adsorbed onto the surface of GO via π-stacking interactions. CP blocks the release of the HP for binding to SP. This results in quenching of the green fluorescence of the label. Upon addition of Hg(II), the linear structure of CP is converted to a hairpin structure due to the formation of thymidine-Hg(II)-thymidine duplexes. HP is released from the CP/HP hybrids, and this causes SP to be released from from GO and fluorescence to be recovered. The signal is strongly amplified by using Exo III-assisted targeting and recycling of HP. Hence, Hg(II) can be detected via the strong increase in fluorescence. The method has a linear response in the 0.1 to 30 nM Hg(II) concentration range and a 10 pM detection limit. It was applied to the determination of Hg(II) in three (spiked) Chinese medicines. Graphical abstract Schematic representation of fluorescence sensing strategy for Hg²⁺ by using graphene oxide as a quencher and exonuclease III-assisted signal amplification.

Progress in rapid optical assays for heavy metal ions based on the use of nanoparticles and receptor molecules

This review (with 230 refs.) covers recent progress in rapid optical assays for heavy metals (primarily lead and mercury as the most relevant) based on the use of nanoparticles and receptor molecules. An introduction surveys the importance, regulatory demands (such as maximum permissible concentrations) and potential and limitations of various existing methods. This is followed by a general discussion on the use of nanoparticles in optical assays of heavy metals (including properties, basic mechanisms of signal generation). The next sections cover methods for the functionalization of nanoparticles with (a) sulfur-containing compounds (used for modification of nanoparticles or added to the reaction medium), (b) nitrogen-containing compounds (such as amino acids, polypeptides, and heterocyclic molecules), and (c) oxygen-containing species (such as hydroxy and carbonyl compounds). This is continued by a specific description of specific assays based on the use of aptamers as receptors, on the use of deoxyribozymes as synthetic reaction catalysts, of G-quadruplex aptamers, of aptamers in logic gate-type of assays of linear (unstructured) aptamers ("hairpins"), and on the use of aptamers in lateral flow assays. A next section covers assays based on the employment of antibodies as receptors (used in the immunoassay development). The properties of various nanoparticles and their applicability in optical assays are also discussed in some detail. Final sections discuss the selectivity of assays, potential interferences by other cations, methods for their elimination, and also matrix effects and approaches for sample pretreatment. A concluding section discusses current challenges and future trends. Analysis based on enzyme inhibition assay is not treated here but enzyme-like action of some receptor molecules such as DNAzymes is discussed. Graphical abstract Schematic presentation of main principles of application of various nanoparticles with receptor molecules (S-, N-, O-containing, heterocyclic compounds, proteins, antibody, aptamers) for heavy metals ions detection. The included methods cover optical assays with description of mechanisms of interactions and signal generation.

Colorimetric and visual mercury(II) assay based on target-induced cyclic enzymatic amplification, thymine-Hg(II)-thymine interaction, and aggregation of gold nanoparticles

A colorimetric biosensor and visual test is described for the determination of mercury(II). It relies on the specific thymine-Hg(II)-thymine (T-Hg²⁺-T) interaction which induces a cyclic amplification process (caused by the enzyme exonuclease III) and the aggregation of gold nanoparticles. These results in a color change from red to violet. Under optimized conditions, this colorimetric assay (best performed at 524 nm) has a detection limit as low as 0.9 nM with a detection range over 4 orders of magnitude (from 1 nM to 10 μM). Graphical abstract Schematic of a colorimetric method for determination of mercury ions (Hg²⁺) based on the thymine-Hg²⁺-thymine interaction-triggered cyclic enzymatic amplification and aggregation of gold nanoparticles with the aid of exonuclease III (Exo III).

Graphitic carbon nitride quantum dots as an "off-on" fluorescent switch for determination of mercury(II) and sulfide

A rapid method has been developed for the determination of Hg(II) and sulfide by using graphitic carbon nitride quantum dots (g-CNQDs) as a fluorescent probe. The interaction between Hg(II) and g-CNQDs leads to the quenching of the blue g-CNQD fluorescence (with excitation/emission peaks at 390/450 nm). However, the fluorescence can be recovered after addition of sulfide such that the "turn-off" state is switched back to the "turn-on" state. The g-CNQDs were fully characterized by transmission electron microscopy, X-ray diffractometry, X-ray photoelectron spectroscopy, Fourier transform infrared spectroscopy, UV-vis absorption and fluorescence spectroscopy. Under the optimal experimental conditions, this probe is highly selective and sensitive to Hg(II). The linear response to Hg(II) extends from 0.20 to 21 μM with a detection limit of 3.3 nM. In addition, sulfide can be detected via the recovery of fluorescence. The linear response range for sulfide species is from 8.0 to 45 μM with a detection limit of 22 nM. The mechanism of the "turn-off-on" scheme is discussed. The methods have been applied to the analysis of spiked tap water, lake water and wastewater samples. Graphical abstract Schematic of an off-on fluorescent probe for mercury(II). The fluorescence of graphitic carbon nitride quantum dots (g-CNQDs) is quenched by Hg²⁺ but is recovered after reacting with S^2- as it can combine with Hg²⁺ on the surface of g-CNQDs.

Colorimetric determination of Hg(II) via the gold amalgam induced deaggregation of gold nanoparticles

A method is described for the colorimetric determination of mercury(II). In the absence of Hg(II), aminopropyltriethoxysilane (APTES) which is positively charged at pH 7 is electrostatically absorbed on the surface of gold nanoparticles (AuNPs). This neutralizes the negative charges of the AuNPs and leads to NP aggregation and a color change from red to blue-purple. However, in the presence of Hg(II), reduced Hg (formed through the reaction between Hg(II) and citrate on the AuNP surface) will replace the APTES on the AuNPs. Hence, the formation of aggregates is suppressed and the color of the solution does not change. The assay is performed by measuring the ratio of absorbances at 650 and 520 nm and can detect Hg(II) at nanomolar levels with a 10 nM limit of detection. The specific affinity between mercury and gold warrants the excellent selectivity for Hg(II) over other environmentally relevant metal ions. Graphical Abstract Schematic of the method for determination of Hg²⁺ based on the gold amalgam-induced deaggregation of gold nanoparticles in the presence of APTES with the LOD of 10.1 nM.