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Oduselu GO, Ajani OO, Ogunnupebi TA, Elebiju OF, Bodun DS, Opebiyi OT, Adebiyi E. Synthesis, in silico and in vitro antimicrobial efficacy of some amidoxime-based benzimidazole and benzimidamide derivatives. RSC Med Chem 2025:d5md00114e. [PMID: 40162201 PMCID: PMC11950986 DOI: 10.1039/d5md00114e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Accepted: 03/09/2025] [Indexed: 04/02/2025] Open
Abstract
Amidoximes are employed as building blocks to synthesise heterocyclic motifs with biological significance. They are very reactive and are used as prodrugs of amidine. This present study unveils the synthesis of amidoxime-based benzimidazole and benzimidamide motifs and evaluates their in silico and in vitro antimicrobial potential as future drug candidates. The compounds (2a, 2b, 4a-c) were synthesized using multi-step synthetic pathways. The synthesised compounds were characterised using physico-chemical examination, 1H- and 13C-NMR, DEPT-135, and FT-IR spectroscopic analyses. The in silico antimicrobial potentials of the synthesized compounds were carried out against glucosamine-6-phosphate synthase of E. coli (PDB ID: 2VF5), and N-myristoyltransferase (NMT) of C. albicans (PDB ID: 1IYL), while the in vitro antimicrobial screening was investigated against selected bacteria and fungi. The in silico studies were carried out using predicted ADMET screening, molecular docking, MM-GBSA, induced-fit docking (IFD), and molecular dynamics (MD) simulation studies. Furthermore, the in vitro experimental validations were performed using the agar diffusion method and the standard antibacterial and antifungal drugs used were gentamicin and ketoconazole respectively. The predicted toxicity test of the compounds showed no significant risk, except for 4c, which showed high tumorigenic risk. Compounds 2b and 2a gave better binding energies; -8.0 kcal mol-1 for 2VF5 and -11.7 kcal mol-1 for 1IYL, respectively. The antimicrobial zone of inhibition and minimum inhibitory concentration values were 40 mm and 3.90 mg mL-1 against S. mutans, then 42 mm and 1.90 mg mL-1 against C. albicans. Potential antimicrobial drug candidates have been identified in this report and should be explored for future preclinical research.
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Affiliation(s)
- Gbolahan O Oduselu
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
- West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana P. O Box LG 54, Legon Accra Ghana
| | - Olayinka O Ajani
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
- Department of Chemistry, Covenant University Km 10 Idiroko Road P.M.B. 1023 Ota Ogun State Nigeria
| | - Temitope A Ogunnupebi
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
- Department of Chemistry, Covenant University Km 10 Idiroko Road P.M.B. 1023 Ota Ogun State Nigeria
| | - Oluwadunni F Elebiju
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
- Department of Chemistry, Covenant University Km 10 Idiroko Road P.M.B. 1023 Ota Ogun State Nigeria
| | - Damilola S Bodun
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
| | | | - Ezekiel Adebiyi
- Covenant University Bioinformatics Research (CUBRe), Covenant University Ota Nigeria
- African Center of Excellence in Bioinformatics and Data Intensive Science, Makerere University Kampala Uganda
- Division of Applied Bioinformatics, German Cancer Research Center (DKFZ) Heidelberg Germany
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2
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Chen Y, Li Z, Xu Y, Huang T, Hai L, Nie R, Wu Y. Access to Amides and Lactams via Pyridotriazole as a Transformable Directing Group. J Org Chem 2023; 88:15597-15607. [PMID: 37916793 DOI: 10.1021/acs.joc.3c01490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
Amide and lactam frameworks were synthesized via an efficient two-step strategy. In this protocol, pyridotriazoles were first treated with isocyanates to form the corresponding amides, which were found to be sufficiently reactive to undergo subsequent intramolecular N-H insertion in the absence of any additional reagents or catalysts.
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Affiliation(s)
- Yuting Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Zhiyang Li
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Yanning Xu
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Tianle Huang
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Li Hai
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Ruifang Nie
- Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan 250021, China
| | - Yong Wu
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Engineering Laboratory for Plant-Sourced Drug and Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
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3
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Catalytic and non-catalytic amidation of carboxylic acid substrates. Mol Divers 2021; 26:1311-1344. [PMID: 34120303 DOI: 10.1007/s11030-021-10252-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 06/08/2021] [Indexed: 10/21/2022]
Abstract
The present review offers an apt summary of amide bond formation with carboxylic acid substrates by taking advantage of several methods. Carboxamides can be regarded as a substantial part of organic and medicinal chemistry due to their utility in synthesizing peptides, lactams, and more than 25% of familiar drugs. Moreover, they play a leading role in the synthesis of bioactive products with anticancer, antifungal, and antibacterial properties. The data are arranged based on the type and amount of reagents used to conduct amidation and are also divided into the following categories: catalytic amidation of carboxylic acids, non-catalytic amidation, and transamidation.
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4
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Detection of Two Genotoxic Impurities in Drug Substance and Preparation of Imatinib Mesylate by LC–MS/MS. Chromatographia 2020. [DOI: 10.1007/s10337-020-03903-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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5
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Jiang Y, Suo H, Zhang D, Li X, Sun Y, Ren B, Zhang W, Xu G. An Efficient Method for Reduction of Nitroaromatic Compounds to the Corresponding Aromatic Amines with NH 2NH 2·H 2O Catalysed by H 2O 2-Treated Activated Carbon. JOURNAL OF CHEMICAL RESEARCH 2017. [DOI: 10.3184/174751917x15005518143041] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
An efficient and green protocol for the reduction of nitroaromatic compounds to the corresponding amines has been developed. The reduction catalyst system includes NH2NH2·H2O and H2O2-treated activated carbon. Without adding additional metals, the H2O2-treated activated carbon could be reused for many cycles without decreasing catalytic efficiency. The aromatic amines could be obtained in good to excellent yields.
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Affiliation(s)
- Yuqin Jiang
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
| | - Huajun Suo
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
| | - Dandan Zhang
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
| | - Xiyong Li
- Weihai Ocean Vocational College, Weihai, P.R. China
| | - Yamin Sun
- Weihai Ocean Vocational College, Weihai, P.R. China
| | - Baoqi Ren
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
| | - Weiwei Zhang
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
| | - Guiqing Xu
- Henan Engineering Laboratory of Chemical Pharmaceuticals & Biomedical Materials, Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, P.R. China
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6
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Esteves H, Brito TO, Ribeiro-Viana R, de Fátima Â, Macedo F. Tert
-butyl hydroperoxide-promoted guanylation of amines with benzoylthioureas: Mechanistic insights by HRMS and 1
H NMR. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3698] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Henrique Esteves
- Departamento de Química; Universidade Estadual de Londrina; Rod. Celso Garcia Cid, km. 380, Londrina Paraná 86057-970 Brazil
| | - Tiago Oliveira Brito
- Departamento de Química; Universidade Estadual de Londrina; Rod. Celso Garcia Cid, km. 380, Londrina Paraná 86057-970 Brazil
| | - Renato Ribeiro-Viana
- Departamento de Química; Universidade Estadual de Londrina; Rod. Celso Garcia Cid, km. 380, Londrina Paraná 86057-970 Brazil
| | - Ângelo de Fátima
- Departamento de Química; Universidade Federal de Minas Gerais; Av. Pres. Antônio Carlos, 6627, Belo Horizonte Minas Gerais 31270-901 Brazil
| | - Fernando Macedo
- Departamento de Química; Universidade Estadual de Londrina; Rod. Celso Garcia Cid, km. 380, Londrina Paraná 86057-970 Brazil
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7
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Nicolaou KC, Vourloumis D, Totokotsopoulos S, Papakyriakou A, Karsunky H, Fernando H, Gavrilyuk J, Webb D, Stepan AF. Synthesis and Biopharmaceutical Evaluation of Imatinib Analogues Featuring Unusual Structural Motifs. ChemMedChem 2015; 11:31-7. [PMID: 26585829 DOI: 10.1002/cmdc.201500510] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Indexed: 11/10/2022]
Abstract
A convenient synthesis of imatinib, a potent inhibitor of ABL1 kinase and widely prescribed drug for the treatment of a variety of leukemias, was devised and applied to the construction of a series of novel imatinib analogues featuring a number of non-aromatic structural motifs in place of the parent molecule's phenyl moiety. These analogues were subsequently evaluated for their biopharmaceutical properties (e.g., ABL1 kinase inhibitory activity, cytotoxicity). The bicyclo[1.1.1]pentane- and cubane-containing analogues were found to possess higher themodynamic solubility, whereas cubane- and cyclohexyl-containing analogues exhibited the highest inhibitory activity against ABL1 kinase and the most potent cytotoxicity values against cancer cell lines K562 and SUP-B15. Molecular modeling was employed to rationalize the weak activity of the compounds against ABL1 kinase, and it is likely that the observed cytotoxicity of these agents arises through off-target effects.
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Affiliation(s)
- Kyriacos C Nicolaou
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA.
| | - Dionisios Vourloumis
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA. , .,Laboratory of Chemical Biology of Natural Products & Designed Molecules, National Centre of Scientific Research (NCSR) "Demokritos", Agia Paraskevi, Athens, 15310, Greece. ,
| | | | - Athanasios Papakyriakou
- Laboratory of Chemical Biology of Natural Products & Designed Molecules, National Centre of Scientific Research (NCSR) "Demokritos", Agia Paraskevi, Athens, 15310, Greece
| | - Holger Karsunky
- Stemcentrx, Inc., 450 East Jamie Court, San Francisco, CA, 94080, USA
| | - Hanan Fernando
- Stemcentrx, Inc., 450 East Jamie Court, San Francisco, CA, 94080, USA
| | - Julia Gavrilyuk
- Stemcentrx, Inc., 450 East Jamie Court, San Francisco, CA, 94080, USA
| | - Damien Webb
- Pfizer Worldwide Research & Development, 610 Main Street, Cambridge, MA, 02139, USA
| | - Antonia F Stepan
- Pfizer Worldwide Research & Development, 610 Main Street, Cambridge, MA, 02139, USA.
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8
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Preparation of 6-Unsubstituted 3,4-Dihydropyrimidin-2(1H)-Ones and 2-(Arylamino)Pyrimidines. Chem Heterocycl Compd (N Y) 2014. [DOI: 10.1007/s10593-014-1428-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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9
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Synthesis of 2-Arylaminopyrimidines from 1,4,6-Trisubstituted Pyrimidine-2(1H)-Thiones*. Chem Heterocycl Compd (N Y) 2014. [DOI: 10.1007/s10593-014-1417-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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10
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Patil SR, Nandre JP, Jadhav D, Bothra S, Sahoo SK, Devi M, Pradeep CP, Mahulikar PP, Patil UD. Imatinib intermediate as a two in one dual channel sensor for the recognition of Cu2+and I−ions in aqueous media and its practical applications. Dalton Trans 2014; 43:13299-306. [DOI: 10.1039/c4dt01516a] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An imatinib intermediate was developed for the colorimetric sensing of Cu2+ions in aqueous solution.
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Affiliation(s)
- Samadhan R. Patil
- School of Chemical Sciences
- North Maharashtra University
- Jalgaon - 425 001, India
| | - Jitendra P. Nandre
- School of Chemical Sciences
- North Maharashtra University
- Jalgaon - 425 001, India
| | - Devising Jadhav
- School of Chemical Sciences
- North Maharashtra University
- Jalgaon - 425 001, India
| | - Shilpa Bothra
- Department of Applied Chemistry
- S. V. National Institute Technology
- Surat-395 007, India
| | - S. K. Sahoo
- Department of Applied Chemistry
- S. V. National Institute Technology
- Surat-395 007, India
| | - Manisha Devi
- School of Basic Sciences
- Indian Institute of Technology
- Mandi, Kamand-175005, India
| | | | - Pramod P. Mahulikar
- School of Chemical Sciences
- North Maharashtra University
- Jalgaon - 425 001, India
| | - Umesh D. Patil
- School of Chemical Sciences
- North Maharashtra University
- Jalgaon - 425 001, India
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11
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Luo Y, Liu H, Lu W. Design and Synthesis of NewImatinibAnalogs Containing Thiazolyl Moiety. J Heterocycl Chem 2013. [DOI: 10.1002/jhet.1055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yu Luo
- Department of Chemistry; East China Normal University; Shanghai 200062 China
| | - Haiyan Liu
- Department of Chemistry; East China Normal University; Shanghai 200062 China
| | - Wei Lu
- Institute of Drug Discovery and Development, iAIR; East China Normal University; Shanghai 200062 China
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12
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Koroleva EV, Gusak KN, Ermolinskaya AL, Ignatovich ZV. Preparative synthesis of heterocyclic and aromatic N-benzyl amines. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2013. [DOI: 10.1134/s107042801304012x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Kompella A, Adibhatla BRK, Muddasani PR, Rachakonda S, Gampa VK, Dubey PK. A Facile Total Synthesis for Large-Scale Production of Imatinib Base. Org Process Res Dev 2012. [DOI: 10.1021/op300212u] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Amala Kompella
- Natco Research Centre, B-13, Industrial
Estate, Sanath Nagar, Hyderabad, India
| | | | | | | | | | - Pramod Kumar Dubey
- Department of Chemistry, JNTU College of Engineering, Kukatpally, Hyderabad, India
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14
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Koroleva EV, Kadutskii AP, Farina AV, Ignatovich JV, Ermolinskaya AL, Gusak KN, Kalinichenko EN. A practical synthesis of 4-[(4-methylpiperazin-1-yl)methyl]benzoic acid—the key precursor toward imatinib. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.06.107] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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15
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Boersch C, Merkul E, Müller TJJ. Katalytische Synthesen N-heterocyclischer Inone und Indione durch In-situ-Aktivierung von Carbonsäuren mit Oxalylchlorid. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201103296] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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16
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Boersch C, Merkul E, Müller TJJ. Catalytic Syntheses of N-Heterocyclic Ynones and Ynediones by In Situ Activation of Carboxylic Acids with Oxalyl Chloride. Angew Chem Int Ed Engl 2011; 50:10448-52. [DOI: 10.1002/anie.201103296] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2011] [Indexed: 11/05/2022]
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