Density functional theory investigation of cocaine water complexes

Theoretical aspects of the adsorption of normal and modified base pairs of DNA on graphene models toward DNA sequencing

A theoretical understanding of the adsorption of DNA base pairs (GC, AT, CAF-T and CAF-C) on the graphene models (Gr, SiGr and SiGr-COOH) is investigated. Among the complexes, SiGr-COOH_AT is found to have the highest adsorption energies of -202.83 kcal/mol. The strong adsorption between DNA base pairs and the SiGr-COOH model leads to concomitant charge transfer responsible for the stability of the corresponding models and is verified with NBO analysis. AIM analysis discloses the high orbital overlap that signifies the strong interaction. Closed-shell interactions are observed through the positive values of total electron density, and it is also observed that Si-O(N) interaction has both covalent and electrostatic characteristics. This is the first theoretical attempt to investigate the adsorption of DNA base pairs on SiGr-COOH, which is more favourable than other models and may call for further experimental studies, which is crucial in developing new bio-sensors.Communicated by Ramaswamy H. Sarma.

Cation-Anion Interactions, Stability, and IR Spectra of Dicationic Amino Acid-Based Ionic Liquids Probed Using Density Functional Theory

In this work, we have theoretically studied the dicationic ionic liquids (DILs) constructed from geminal methylimidazolium dication with varying amino acid anions and spacers using density functional theory. Amino acid-based DILs form via strong C-H···O hydrogen bonds. These hydrogen bonds have a significant role in stabilizing the DILs. The higher cation-anion interaction energy in the order of covalent bond energy and liquid density of DILs imply higher thermal stability than their mono analogues. The C-H stretching frequencies are above 3100 cm^-1 in all complexes and form a signature for DILs. Interestingly, aliphatic and aromatic amino acid anions show similar molecular properties. Overall, the DILs formed from amino acids exhibit high stability and large surface tension and are chemically non-toxic; hence, they can replace inorganic DILs.

Matrix Isolation Spectroscopy: Aqueous p-Toluenesulfonic Acid Solvation

Interaction between p-toluenesulfonic acid (pTSA) and water is studied at -20 °C in a CCl₄ matrix. In CCl₄ water exists as monomers with restricted rotational motion about its symmetry axis. Additionally, CCl₄ is transparent in the hydrogen-bonded region; CCl₄ thus constitutes an excellent ambient thermal energy matrix isolation medium for diagnosing interactions with water. Introducing pTSA-nH₂O gives rise to two narrow resonances at 3642 cm^-1 and at 2835 cm^-1 plus a broad 3000-3550 cm^-1 absorption. In addition, negative monomer symmetric and asymmetric stretch features relative to nominally dry CCl₄ indicate that fewer water monomers exist in the cooled (-20 °C) acid solution than in room-temperature anhydrous CCl₄. The negative peaks along with the broad absorption band indicate that water monomers are incorporated into clusters. The 3642 cm^-1 resonance is assigned to the OH-π interaction with a cluster containing many water molecules per acid molecule. The 2835 cm^-1 resonance is assigned to the (S-)O-H stretch of pTSA-dihydrate. The coexistence of these two species provides insights into interactions in this acid-water CCl₄ system.

Structure and NLO properties of halogen (F, Cl) substituted formic acid dimers

In this work, using ab initio and density functional theory (DFT) methods halogen substituted formic acid (FA) dimer is studied. The dimer stability is due to the hydrogen bonds, either conventional (OH⋯O, OH⋯F, OH⋯Cl) or non-conventional (CH⋯O, CH⋯F, CH⋯Cl). Among all the dimers, trans-trans form is more stable than the trans-cis, and cis-cis form. Basis set extrapolated counterpoise corrected interaction energy results for the FA dimer are in excellent agreement with BSSE corrected MP2 interaction energy. Symmetry Adopted Perturbation Theory (SAPT) analysis reveals that the electrostatic effect plays a dominant role in stabilization among the dimers with maximum interaction energy. Chlorine substituted FA dimer has high hyperpolarizability, which makes them excellent candidate for nonlinear optical materials (NLO). The halogen substituted formic acid dimers have higher stability and polarizability value than the unsubstituted formic acid dimer. The hyperpolarizability values depend on the geometrical structures of halogenated formic acid dimers than the type of hydrogen bonds. The small excitation energy and HOMO-LUMO gap in the halogenated formic acid dimer has led to the strong nonlinear optical response. The depolarization ratio and Rayleigh scattering increases in formic acid dimer after the halogen atom substitution.

DFT study on X⁻·(H₂O)(n=1-10) (X=OH, NO₂, NO₃, CO₃) anionic water cluster

A theoretical study to understand the interaction between anion and the water molecules through the hydration (X(-)·(H2O)n (X=OH, NO2, NO3, CO3), where n=1-10), using the density functional theory method with B3LYP functional and 6-311++G(d,p) basis set has been carried out systematically. In these hydrated clusters we notice three different cases of bond arrangements, namely, symmetrical double hydrogen bond, single hydrogen bond and inter-water hydrogen bond. All the complexes are dominated by the O-H⋯O hydrogen bond, in which the anion act as a proton acceptor, while the water molecule act as a proton donor. A linear correlation is obtained between the solvent stabilization energy and the size (n) of the hydrated cluster for all the anions. The weighted average interaction energy values, shows that the water molecules strongly bind with the OH(-) anion. Besides, the solvation of the OH(-) anion requires less number of water molecules when compared with the other anions. Energy decomposition analysis (EDA) shows the strong dominance of the electrostatic energy component within the interaction energy. The total NPA charges on the anions indicate an increase in the solvation due to hydration. From AIM analysis, excellent linear inverse correlation is observed for both the electron density and Laplacian of the electron density with respect to the hydrogen bond length. Natural bonding orbital analysis (NBO) predicts large charge transfer between the OH(-) anion and the water molecules.