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Machado FC, Quintano M, Santos-Jr CV, Carneiro Neto AN, Kraka E, Longo RL, Moura RT. Theoretical insights into the vibrational spectra and chemical bonding of Ln(III) complexes with a tripodal N 4O 3 ligand along the lanthanide series. Phys Chem Chem Phys 2025; 27:1794-1803. [PMID: 39560452 DOI: 10.1039/d4cp03677h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2024]
Abstract
This study provides new theoretical insights into the vibrational spectra of Ln(III) complexes, along the lanthanide series by utilizing the LModeAGen protocol and integrating cutting-edge topological ideas. It provides a quantitative interpretation of the vibrational spectra of [Ln(trensal)] complexes at the B3LYP/MWBn(Ln)/6-311++G** (n from 46 (La) to 60 (Lu)) level using the characterization of normal modes from the local vibrational mode theory. This involves decomposing normal vibrational modes related to the complex formation, distortions in the coordination sphere, and C-H vibrations into local mode contributions, offering particularly promising results aimed at the design of highly luminescent lanthanide complexes. This study also delivers key theoretical insights into the chemical bonding of the coordination sphere of [Ln(trensal)] by combining the local vibrational mode theory and the bond overlap model to achieve relationships between bond properties, including those of the Badger-type. Altogether, we present the theoretical framework necessary to quantitatively interpret the vibrational spectra of [Ln(trensal)] complexes along the lanthanide series and gain a better understanding of the lanthanide-ligand chemical bonds, thereby enhancing our understanding of their chemistry and guiding future design efforts.
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Affiliation(s)
- Francielle C Machado
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, Cidade Universitária, 50740-560, Recife, PE, Brazil.
| | - Mateus Quintano
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, Cidade Universitária, 50740-560, Recife, PE, Brazil.
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, TX 75275, USA.
| | - Carlos V Santos-Jr
- Department of Chemistry, Federal University of Paraíba, João Pessoa, PB 58033-455, Brazil
| | - Albano N Carneiro Neto
- Physics Department and CICECO - Aveiro Institute of Materials University of Aveiro, Aveiro 3810-193, Portugal
| | - Elfi Kraka
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, TX 75275, USA.
| | - Ricardo L Longo
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, Cidade Universitária, 50740-560, Recife, PE, Brazil.
| | - Renaldo T Moura
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, TX 75275, USA.
- Department of Chemistry and Physics, Center of Agrarian Sciences, Federal University of Paraíba, Areia, PB 58397-000, Brazil
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Santos‐Jr CV, Kraka E, Moura RT. Chemical Bond Overlap Descriptors From Multiconfiguration Wavefunctions. J Comput Chem 2025; 46:e27534. [PMID: 39607372 PMCID: PMC11604095 DOI: 10.1002/jcc.27534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 11/04/2024] [Accepted: 11/07/2024] [Indexed: 11/29/2024]
Abstract
The chemical bond is a fundamental concept in chemistry, and various models and descriptors have evolved since the advent of quantum mechanics. This study extends the overlap density and its topological descriptors (OP/TOP) to multiconfigurational wavefunctions. We discuss a comparative analysis of OP/TOP descriptors using CASSCF and DCD-CAS(2) wavefunctions for a diverse range of molecular systems, including X-O bonds in X-OH (XH, Li, Na, H2B, H3C, H2N, HO, F) and Li-X' (XF, Cl, and Br). Results show that OP/TOP aligns with bonding models like the quantum theory of atoms in molecules (QTAIM) and local vibrational modes theory, revealing insights such as overlap densities shifting towards the more electronegative atom in polar bonds. The Li-F dissociation profile using OP/TOP descriptors demonstrated sensitivity to ionic/neutral inversion during Li-F dissociation, highlighting their potential for elucidating complex bond phenomena and offering new avenues for understanding multiconfigurational chemical bond dynamics.
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Affiliation(s)
| | - Elfi Kraka
- Department of Chemistry, Computational and Theoretical Chemistry Group (CATCO)Southern Methodist UniversityDallasTexasUSA
| | - Renaldo T. Moura
- Department of Chemistry, Computational and Theoretical Chemistry Group (CATCO)Southern Methodist UniversityDallasTexasUSA
- Department of Chemistry and Physics, Center of Agrarian SciencesFederal University of ParaibaAreiaBrazil
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Barbosa WG, Santos-Jr CV, Andrade RB, Lucena JR, Moura RT. Bond analysis in meta- and para-substituted thiophenols: overlap descriptors, local mode analysis, and QTAIM. J Mol Model 2024; 30:139. [PMID: 38639900 DOI: 10.1007/s00894-024-05932-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 04/07/2024] [Indexed: 04/20/2024]
Abstract
CONTEXT This study delves into the chemical nuances of thiophenols and their derivatives through a comprehensive computational analysis, moving beyond traditional energetic perspectives such as bond dissociation enthalpy and S-H dissociation dynamics. By employing the overlap model along with its topological descriptors (OP/TOP), quantum theory of atoms in molecules (QTAIM), and local vibrational mode (LVM) theories, the research provides a deeper understanding of the S-H and C-S bonding scenarios in substituted thiophenols. The investigation follows the electron-donating capacity of S-H substituent variation with the nature and positioning of other ring substituents. Energy profile analyses indicate distinct stability differences in the cis and trans conformations of meta- and para-PhSH systems, influenced by the electron-donating strength of these substituents. The study also uncovers significant variations in S-H bond distances and descriptor values, particularly in para-substituted PhSH, reflecting the influence of electron-donating or withdrawing substituents. In contrast, alterations at the meta-position show minimal effects on C-S bond descriptors, while para-substitutions markedly influence C-S bond characteristics, demonstrating a clear correlation with the electron-donating or withdrawing capabilities of the substituents. This research sheds light on the intricate bond dynamics in aromatic systems with diverse substituents, highlighting the complex interaction between electronic effects and molecular conformation. METHODS The study employs the ω B97X-D/Def2TZVP level of theory for molecular geometries, ensuring accurate characterization of structures as true minima via analytical harmonic frequency determination. The electronic properties of S-H and C-S bonds in variously substituted thiophenols were analyzed using OP/TOP, QTAIM, and LVM methodologies. Computational processes, including conformational scans, geometry optimizations, and vibrational frequency calculations, were conducted using Gaussian 09, with ultra-fine integration grids and tight convergence criteria for the SCF procedure. Bond descriptors were computed utilizing ChemBOS, Multiwfn, and LModeA software, providing a robust and detailed examination of bond properties.
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Affiliation(s)
- Willis G Barbosa
- Department of Chemistry, State University of Paraiba, Campina Grande, 58429-500, PB, Brazil
| | - Carlos V Santos-Jr
- Department of Chemistry, Federal University of Paraiba, João Pessoa, 58051-970, PB, Brazil
| | - Railton B Andrade
- Department of Chemistry, State University of Paraiba, Campina Grande, 58429-500, PB, Brazil
| | - Juracy R Lucena
- Department of Chemistry, State University of Paraiba, Campina Grande, 58429-500, PB, Brazil
| | - Renaldo T Moura
- Department of Chemistry and Physics, Center of Agrarian Sciences, Federal University of Paraiba, Areia, 58397-000, PB, Brazil.
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, TX, 75275, USA.
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Santos CV, Monteiro SA, Soares ASC, Souto ICA, Moura RT. Decoding Chemical Bonds: Assessment of the Basis Set Effect on Overlap Electron Density Descriptors and Topological Properties in Comparison to QTAIM. J Phys Chem A 2023; 127:7997-8014. [PMID: 37703453 DOI: 10.1021/acs.jpca.3c04504] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2023]
Abstract
Quantum chemical bonding descriptors based on the total and overlap density can provide valuable information about chemical interactions in different systems. However, these descriptors can be sensitive to the basis set used. To address this, different numerical treatments of electron density have been proposed to reduce the basis set dependency. In this work, we introduce overlap properties (OPs) obtained through numerical treatment of the electron density and present the topology of overlap density (TOP) for the first time. We compare the basis set dependency of numerical OP and TOP descriptors with their quantum theory of atoms in molecules (QTAIM) counterparts, considering the total electron density. Three single (C-C, C-O, and C-F) bonds in ethane, methanol, and fluoromethane and two double (C═C and C═O) bonds in ethene and formaldehyde were analyzed. Diatomic molecules Li-X with X = F, Cl, and Br were also analyzed. Eight parameters, including QTAIM descriptors and OP/TOP descriptors, are used to assess the basis dependency at the ωB97X-D level of theory using 28 basis sets from three classes: Pople, Ahlrichs, and Dunning. The study revealed that the topological overlap electron density properties exhibit comparatively lesser dependence on the basis set compared to their total electron density counterparts. Remarkably, these properties retain their chemical significance even with reduced basis set dependency. Similarly, numerical OP descriptors show less basis set dependency than their QTAIM counterparts. The excess of polarization functions increases charge concentration in the interatomic region and influences both QTAIM and OP descriptors. The basis sets Def2TZVP, 6-31++G(d,p), 6-311++G(d,p), cc-pVDZ, cc-pVTZ, and cc-pVQZ demonstrate reduced variability for the tested bond classes in this study, with particular emphasis on the triple-ζ quality Ahlrichs' basis set. We recommend against using basis sets with numerous polarization functions, such as augmented Dunning's and Ahlrichs' quadruple-ζ.
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Affiliation(s)
- Carlos V Santos
- Department of Chemistry, Federal University of Paraiba, Joao Pessoa, Paraiba 58051-970, Brazil
| | - Shirlene A Monteiro
- Department of Chemistry, State University of Paraiba, Campina Grande, Paraiba 58051-970, Brazil
| | - Amanda S C Soares
- Department of Chemistry and Physics, Center of Agrarian Sciences, Federal University of Paraiba, Areia, Paraiba 58397-000, Brazil
| | - Isabeli C A Souto
- Department of Chemistry and Physics, Center of Agrarian Sciences, Federal University of Paraiba, Areia, Paraiba 58397-000, Brazil
| | - Renaldo T Moura
- Department of Chemistry and Physics, Center of Agrarian Sciences, Federal University of Paraiba, Areia, Paraiba 58397-000, Brazil
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
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Kariaka N, Trush VA, Dyakonenko VV, Shishkina SV, Smola SS, Rusakova NV, Sliva TY, Gawryszewska P, Neto ANC, Malta OL, Amirkhanov VM. New luminescent lanthanide tetrakis - complexes NEt4[LnL4] based on dimethyl-N-benzoylamidophosphate. Chemphyschem 2022; 23:e202200129. [PMID: 35536851 DOI: 10.1002/cphc.202200129] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/10/2022] [Indexed: 11/10/2022]
Abstract
The new lanthanide dimethyl-N-benzoylamidophosphate (HL) based tetrakis-complexes NEt 4 [LnL 4 ] (Ln 3+ = La, Nd, Sm, Eu, Gd, Tb, Dy) are reported. The complexes are characterized by means of NMR, IR, absorption, and luminescent spectroscopy as well as by elemental, X-Ray, and thermal gravimetric analyses. The phenyl groups of the four ligands of the complex anion are directed towards one side, while the methoxy groups are directed in the opposite side, which makes the complexes under consideration structurally similar to calixarenes. The effect of changing the alkali metal counterion to the organic cation NEt 4 + on the structure and properties of the tetrakis-complex [LnL4]- is analyzed. The complexes exhibit bright characteristic for respective lanthanides luminescence. Rather high intensity of the band of 5 D 0 → 7 F 4 transition, observed in the luminescence spectrum of NEt 4 [EuL 4 ], is discussed based on theoretical calculations.
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Affiliation(s)
- Natalia Kariaka
- Taras Shevchenko National University of Kyiv, Department of Chemistry, 64/13, Volodymyrska Street, 01601, Kyiv, UKRAINE
| | - Victor A Trush
- Taras Shevchenko National University of Kyiv: Kiivs'kij nacional'nij universitet imeni Tarasa Sevcenka, inorganic chemistry, UKRAINE
| | - Viktoriya V Dyakonenko
- Institute for Single Crystals NASU: Naukovo-tehnologicnij kompleks Institut monokristaliv Nacional'na akademia nauk Ukraini, -, UKRAINE
| | - Svitlana V Shishkina
- Institute for Single Crystals NASU: Naukovo-tehnologicnij kompleks Institut monokristaliv Nacional'na akademia nauk Ukraini, -, UKRAINE
| | - Sergii S Smola
- A V Bogatsky Physico-Chemical Institute NASU: Fiziko-himicnij institut imeni O V Bogatskogo Nacional'na akademia nauk Ukraini, Chemistry of lanthanides, UKRAINE
| | - Nataliia V Rusakova
- A V Bogatsky Physico-Chemical Institute NASU: Fiziko-himicnij institut imeni O V Bogatskogo Nacional'na akademia nauk Ukraini, chemistry of lanthanides, UKRAINE
| | - Tetiana Y Sliva
- Taras Shevchenko National University of Kyiv: Kiivs'kij nacional'nij universitet imeni Tarasa Sevcenka, inorganic chemistry, UKRAINE
| | - Paula Gawryszewska
- University of Wroclaw: Uniwersytet Wroclawski, faculty of chemistry, POLAND
| | - Albano N Carneiro Neto
- University of Aveiro: Universidade de Aveiro, Physics Dep. and CICECO-Aveiro Materials Institute, BRAZIL
| | - Oscar L Malta
- Universidade Federal de Pernambuco, de Quirmica Fundamental, BRAZIL
| | - Vladimir M Amirkhanov
- Taras Shevchenko National University of Kyiv: Kiivs'kij nacional'nij universitet imeni Tarasa Sevcenka, inorganic chemistry, UKRAINE
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Santos-Jr CV, A. F. de Souza M, Kraka E, Moura Jr RT. Analysis of spectator chemical bonds in SN2@C and @Si reaction mechanisms in the gas phase. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2021.139282] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Santos-Jr CV, Lima EM, Moura Jr RT. Numerical integration of overlap electron densities: Parallelization strategies for a good load balancing using OpenMP. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113457] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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