Comparison among several vibronic coupling methods

Signatures in Vibrational and Vibronic Spectra of Benzene Molecular Clusters

The photoabsorption and infrared spectra (IR) of molecular systems are heavily influenced by aggregation. In the electronic spectra, the vibronic coupling effect is of utmost importance. Although treating both effects simultaneously can be challenging, it is often the only way to explain the experimental spectrum of molecular clusters. In this work, we study IR spectra and the vibronic coupling effect in the electronic photoabsorption spectra in molecular systems composed of benzene (monomer, dimers, and crystal). Photoabsorption spectra were generated using the direct vibronic coupling method at the density functional theory (DFT) level. We also simulated the spectra with the Liouville-Lanczos approach by calculating the electronic transitions along the main inducing modes for two forbidden transitions (1A1g → 1B2u and 1A1g → 1B1u). DFT was also applied to simulate IR spectra. For the monomer, vibronic coupling was crucial to induce the first and second forbidden transitions. On the other hand, molecular aggregation was sufficient to induce the first and second forbidden transitions in almost all dimers. However, when the vibronic coupling is evaluated for the clusters, the band in the energy range of the 1A1g → 1B1u transition is affected both by the aggregation itself and the inducing modes. Moreover, some inducing modes drastically change the allowed 1A1g → 1E1u transition, depending on the dimer under study due to symmetry breaking. In terms of IR spectra, clear signatures are present. For instance, the intensities of the C-H stretching modes decrease as aggregation increases. This work shows that aggregation impacts the band shapes differently in relation to the benzene aggregate structure and the excitation under analysis.

NEXAFS Spectra Simulations of Nitrogen-Bearing Heterocycles

Five-membered heterocyclic compounds containing nitrogen atoms are important biomolecule building blocks. In addition to their fundamental biological importance, these molecular structures are used in several technological applications. Consequently, it is essential to develop techniques that allow the characterization of these fundamental systems. We address this issue by performing simulations of K-edge NEXAFS spectra by applying a time-dependent density functional theory (TDDFT) and an inner-shell multiconfigurational self-consistent field (IS-MCSCF) of selected molecules. Also, vibronic coupling simulations were considered for the TDDFT computations. Surprisingly, molecular orbital binding energies do not reproduce the order of the transition energies obtained by IS-MCSCF, indicating a possible breakdown of the orbital picture concerning the NEXAFS spectrum. In general, the TDDFT and IS-MCSCF results are compatible and are in close agreement with experimental data. Moreover, vibronic coupling and vertical transition results were very similar. Finally, it is important to mention that, to the best of our knowledge, this is the first time that the IS-MCSCF method has been applied to molecular systems of this size.

Simulating the Fluorescence of Di-8-ANEPPS in Solvents of Different Polarity

Voltage-sensitive fluorescent probes, such as di-8-amino-naphthyl-ethylene-pyridinium-propyl-sulfonate (di-8-ANEPPS), are extremely useful for monitoring the membrane potential in biological and biophysical studies. However, because di-8-ANEPPS is very sensitive to its environment, it can be difficult to distinguish the degree to which a given external factor affects the observed fluorescence. Molecular dynamics simulations based on detailed atomic models make it possible to examine the particular characteristics of the system and predict the effects of the surroundings. Here, the sensitivity of the spectra of di-8-ANEPPS to solvent polarity is investigated by modeling the electronic transition between the ground and excited states using classical molecular mechanical force fields. The absorption and emission of di-8-ANEPPS were simulated in 12 solvents of increasing polarity using nonpolarizable and polarizable force fields. While the computational results and experimental data do not match perfectly, classical Lippert plots of both models show the expected increase of the Stokes shift of di-8-ANEPPS with the orientation polarizability of the surrounding solvent.

Simulating the Fluorescence of the Locally Excited State of DMABN in Solvents of Different Polarities

4-(N,N-Dimethylamino)benzonitrile (DMABN) is a luminescent probe that can be used for tracking changes in the surrounding solvent due to the large change in polarity between its ground and excited states. An important characteristic of DMABN is that it exhibits dual fluorescence with two different emission energies that can be monitored, allowing for better characterization of the surrounding system. The first excited state is called the locally excited (LE) state and is characterized by the movement of charge over the conjugated ring structure. In nonpolar solvents and in the gas phase, the fluorescence of DMABN is entirely attributed to the transition from the near-planar LE state. In more polar environments, emission occurs from both the LE and a second excited state, corresponding to a twisted intramolecular charge-transfer (ICT) structure. For the sake of simplicity, this work considers transitions between only the ground and LE state. Molecular mechanical force field models of DMABN in its ground and LE states have been developed to investigate the sensitivity of the LE state to the polarity of the solvent. Both nonpolarizable and polarizable force fields were developed to simulate the molecule in a series of 10 different solvents of different polarities. The calculated Stokes shift of DMABN increases with increasing orientation polarizability of the surrounding solvent, which is the expected trend, as seen in experimental studies.

Simulating the Voltage-Dependent Fluorescence of Di-8-ANEPPS in a Lipid Membrane

Voltage-sensitive fluorescent dyes such as di-8-ANEPPS (di-8-aminonaphthylethylenepyridinium propylsulfonate) are powerful tools to study biological membranes. Its fluorescence is affected by changes in the membrane potential and other factors, requiring extensive calibration to extract meaningful quantitative results. The amphiphilic di-8-ANEPPS molecule is expected to bind at the membrane-solution interface. However, atomic-level information is sparse about its position and orientation in the membrane, especially in regards to how the latter dynamically fluctuates to affect the observed fluorescence. In the present work, molecular dynamics simulations of the ground and excited states of di-8-ANEPPS embedded in a DPPC membrane as represented by classical force fields were used to investigate how the fluorescence is affected by externally applied potential. The calculations reproduce the shifts in the wavelength of emission as a function of voltage that are observed experimentally, indicating that the approach can help better understand the various factors that can affect the fluorescence of membrane-bound dyes.