A new SEAIRD pandemic prediction model with clinical and epidemiological data analysis on COVID-19 outbreak

Spatial Interaction Analysis of Infectious Disease Import and Export between Regions

Human travel plays a crucial role in the spread of infectious disease between regions. Travel of infected individuals from one region to another can transport a virus to places that were previously unaffected or may accelerate the spread of disease in places where the disease is not yet well established. We develop and apply models and metrics to analyze the role of inter-regional travel relative to the spread of disease, drawing from data on COVID-19 in the United States. To better understand how transportation affects disease transmission, we established a multi-regional time-varying compartmental disease model with spatial interaction. The compartmental model was integrated with statistical estimates of travel between regions. From the integrated model, we derived a transmission import index to assess the risk of COVID-19 transmission between states. Based on the index, we determined states with high risk for disease spreading to other states at the scale of months, and we analyzed how the index changed over time during 2020. Our model provides a tool for policymakers to evaluate the influence of travel between regions on disease transmission in support of strategies for epidemic control.

Deep learning in public health: Comparative predictive models for COVID-19 case forecasting

The COVID-19 pandemic has had a significant impact on both the United Arab Emirates (UAE) and Malaysia, emphasizing the importance of developing accurate and reliable forecasting mechanisms to guide public health responses and policies. In this study, we compared several cutting-edge deep learning models, including Long Short-Term Memory (LSTM), bidirectional LSTM, Convolutional Neural Networks (CNN), hybrid CNN-LSTM, Multilayer Perceptron's, and Recurrent Neural Networks (RNN), to project COVID-19 cases in the aforementioned regions. These models were calibrated and evaluated using a comprehensive dataset that includes confirmed case counts, demographic data, and relevant socioeconomic factors. To enhance the performance of these models, Bayesian optimization techniques were employed. Subsequently, the models were re-evaluated to compare their effectiveness. Analytic approaches, both predictive and retrospective in nature, were used to interpret the data. Our primary objective was to determine the most effective model for predicting COVID-19 cases in the United Arab Emirates (UAE) and Malaysia. The findings indicate that the selected deep learning algorithms were proficient in forecasting COVID-19 cases, although their efficacy varied across different models. After a thorough evaluation, the model architectures most suitable for the specific conditions in the UAE and Malaysia were identified. Our study contributes significantly to the ongoing efforts to combat the COVID-19 pandemic, providing crucial insights into the application of sophisticated deep learning algorithms for the precise and timely forecasting of COVID-19 cases. These insights hold substantial value for shaping public health strategies, enabling authorities to develop targeted and evidence-based interventions to manage the virus spread and its impact on the populations of the UAE and Malaysia. The study confirms the usefulness of deep learning methodologies in efficiently processing complex datasets and generating reliable projections, a skill of great importance in healthcare and professional settings.

Road networks and socio-demographic factors to explore COVID-19 infection during its different waves

The COVID-19 pandemic triggered an unprecedented level of restrictive measures globally. Most countries resorted to lockdowns at some point to buy the much-needed time for flattening the curve and scaling up vaccination and treatment capacity. Although lockdowns, social distancing and business closures generally slowed the case growth, there is a growing concern about these restrictions' social, economic and psychological impact, especially on the disadvantaged and poorer segments of society. While we are all in this together, these segments often take the heavier toll of the pandemic and face harsher restrictions or get blamed for community transmission. This study proposes a road-network-based networked approach to model mobility patterns between localities during lockdown stages. It utilises a panel regression method to analyse the effects of mobility in transmitting COVID-19 in an Australian context, together with a close look at a suburban population's characteristics like their age, income and education. Firstly, we attempt to model how the local road networks between the neighbouring suburbs (i.e., neighbourhood measure) and current infection count affect the case growth and how they differ between delta and omicron variants. We use a geographic information system, population and infection data to measure road connections, mobility and transmission probability across the suburbs. We then looked at three socio-demographic variables: age, education and income and explored how they moderate independent and dependent variables (infection rates and neighbourhood measures). The result shows strong model performance to predict infection rate based on neighbourhood road connection. However, apart from age in the delta variant context, the other variables (income and education level) do not seem to moderate the relationship between infection rate and neighbourhood measure. The results indicate that suburbs with a more socio-economically disadvantaged population do not necessarily contribute to more community transmission. The study findings could be potentially helpful for stakeholders in tailoring any health decision for future pandemics.

A SEIARQ model combine with Logistic to predict COVID-19 within small-world networks

Since the COVID-19 epidemic, mathematical and simulation models have been extensively utilized to forecast the virus's progress. In order to more accurately describe the actual circumstance surrounding the asymptomatic transmission of COVID-19 in urban areas, this research proposes a model called Susceptible-Exposure-Infected-Asymptomatic-Recovered-Quarantine in a small-world network. In addition, we coupled the epidemic model with the Logistic growth model to simplify the process of setting model parameters. The model was assessed through experiments and comparisons. Simulation results were analyzed to explore the main factors affecting the spread of the epidemic, and statistical analysis that was applied to assess the model's accuracy. The results are consistent well with epidemic data from Shanghai, China in 2022. The model can not only replicate the real virus transmission data, but also anticipate the development trend of the epidemic based on available data, so that health policy-makers can better understand the spread of the epidemic.

Long-term spatial and population-structured planning of non-pharmaceutical interventions to epidemic outbreaks

In this paper, we consider the problem of planning non-pharmaceutical interventions to control the spread of infectious diseases. We propose a new model derived from classical compartmental models; however, we model spatial and population-structure heterogeneity of population mixing. The resulting model is a large-scale non-linear and non-convex optimisation problem. In order to solve it, we apply a special variant of covariance matrix adaptation evolution strategy. We show that results obtained for three different objectives are better than natural heuristics and, moreover, that the introduction of an individual's mobility to the model is significant for the quality of the decisions. We apply our approach to a six-compartmental model with detailed Poland and COVID-19 disease data. The obtained results are non-trivialand sometimes unexpected; therefore, we believe that our model could be applied to support policy-makers in fighting diseases at the long-term decision-making level.

Discrete Models in Epidemiology: New Contagion Probability Functions Based on Real Data Behavior

Mathematical modeling is a tool used for understanding diseases dynamics. The discrete-time model is an especial case in modeling that satisfactorily describes the epidemiological dynamics because of the discrete nature of the real data. However, discrete models reduce their descriptive and fitting potential because of assuming a homogeneous population. Thus, in this paper, we proposed contagion probability functions according to two infection paradigms that consider factors associated with transmission dynamics. For example, we introduced probabilities of establishing an infectious interaction, the number of contacts with infectious and the level of connectivity or social distance within populations. Through the probabilities design, we overcame the homogeneity assumption. Also, we evaluated the proposed probabilities through their introduction into discrete-time models for two diseases and different study zones with real data, COVID-19 for Germany and South Korea, and dengue for Colombia. Also, we described the oscillatory dynamics for the last one using the contagion probabilities alongside parameters with a biological sense. Finally, we highlight the implementation of the proposed probabilities would improve the simulation of the public policy effect of control strategies over an infectious disease outbreak.

Forecasting and modeling of the COVID-19 pandemic in the USA with a timed intervention model

We propose a novel Timed InterventionS, P, E, I, Q, R, D model for projecting the possible futures of the COVID-19 pandemic in the USA. The proposed model introduces a series of timed interventions that can account for the influence of real time changes in government policy and social norms. We consider three separate types of interventions: (i) Protective interventions: Where population moves from susceptible to protected corresponding to mask mandates, stay-at-home orders and/or social distancing. (ii) Release interventions: Where population moves from protected to susceptible corresponding to social distancing mandates and practices being lifted by policy or pandemic fatigue. (iii) Vaccination interventions: Where population moves from susceptible, protected, and exposed to recovered (meaning immune) corresponding to the mass immunization of the U.S. Population. By treating the pandemic with timed interventions, we are able to model the pandemic extremely effectively, as well as directly predicting the course of the pandemic under differing sets of intervention schedules. We show that without prompt effective protective/vaccination interventions the pandemic will be extended significantly and result in many millions of deaths in the U.S.

Analysis of non-pharmaceutical interventions impacts on COVID-19 pandemic in Iran

The COVID-19 pandemic shows to have a huge impact on people's health and countries' infrastructures around the globe. Iran was one of the first countries that experienced the vast prevalence of the coronavirus outbreak. The Iranian authorities applied various non-pharmaceutical interventions to eradicate the epidemic in different periods. This study aims to investigate the effectiveness of non-pharmaceutical interventions in managing the current Coronavirus pandemic and to predict the next wave of infection in Iran. To achieve the research objective, the number of cases and deaths before and after the interventions was studied and the effective reproduction number of the infection was analyzed under various scenarios. The SEIR generic model was applied to capture the dynamic of the pandemic in Iran. To capture the effects of different interventions, the corresponding reproduction number was considered. Depending on how people are responsive to interventions, the effectiveness of each intervention has been investigated. Results show that the maximum number of the total of infected individuals will occur around the end of May and the start of June 2021. It is concluded that the outbreak could be smoothed if full lockdown and strict quarantine continue. The proposed modeling could be used as an assessment tool to evaluate the effects of different interventions in new outbreaks.

How limitations in energy access, poverty, and socioeconomic disparities compromise health interventions for outbreaks in urban settings

Low-income households (LIHs) have experienced increased poverty and inaccess to healthcare services during the COVID-19 pandemic, limiting their ability to adhere to health-protective behaviors. We use an epidemiological model to show how a households' inability to adopt social distancing, owing to constraints in utility and healthcare expenditure, can drastically impact the course of disease outbreaks in five urban U.S. counties. LIHs suffer greater burdens of disease and death than higher income households, while functioning as a consistent source of virus exposure for the entire community due to socioeconomic barriers to following public health guidelines. These impacts worsened when social distancing policy could not be imposed. Health interventions combining social distancing and LIH resource protection strategies (e.g., utility and healthcare access) were the most effective in limiting virus spread for all income levels. Policies need to address the multidimensionality of energy, housing, and healthcare access for future disaster management.

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Energy and socioeconomic constraints and public health interventions are discussed

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Utility and health costs constrain a county's ability to enact public health policies

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Securing household utilities is essential to low-income households' health and safety

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Affordable energy and healthcare for vulnerable communities are a critical policy issue

Establishment of epidemic early warning index system and optimization of infectious disease model: Analysis on monitoring data of public health emergencies

The ability to mitigate the damages caused by emergencies is an important symbol of the modernization of an emergency capability. When responding to emergencies, government agencies and decision makers need more information sources to estimate the possible evolution of the disaster in a more efficient manner. In this paper, an optimization model for predicting the dynamic evolution of COVID-19 is presented by combining the propagation algorithm of system dynamics with the warning indicators. By adding new parameters and taking the country as the research object, the epidemic situation in countries such as China, Japan, Korea, the United States and the United Kingdom was simulated and predicted, the impact of prevention and control measures such as effective contact coefficient on the epidemic situation was analyzed, and the effective contact coefficient of the country was analyzed. The paper strives to provide early warning of emergencies scientifically and effectively through the combination of these two technologies, and put forward feasible references for the implementation of various countermeasures. Judging from the conclusion, this study reaffirmed the importance of responding quickly to public health emergencies and formulating prevention and control policies to reduce population exposure and prevent the spread of the pandemic.

Impact of scaling up SARS-CoV-2 vaccination on COVID-19 hospitalizations in Spain

BACKGROUND

The advent of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccines has been associated with a significant decline in coronavirus disease 2019 (COVID-19) hospitalizations and deaths. However, little is known about the benefits experienced by different population groups and/or using distinct vaccines.

METHODS

The Spanish public registry was analyzed to examine associations between weekly vaccination scale-up and the incidence of COVID-19 hospitalizations by age, sex, and vaccine modality. The study period extended from January 2020 to June 2021.

RESULTS

A total of 363 960 COVID-19 hospitalizations were recorded in Spain during the study period, with three peaks in March 2020, November 2020, and January 2021. The incidence of COVID-19 hospitalizations per 100 000 population increased exponentially with age, on average 71.5% for each decade older. Overall, individuals older than 60 years of age accounted for 65% of all COVID-19 hospitalizations. The speedy vaccination rollout since the end of 2020, with prioritization of the elderly groups, resulted in a rapid fall in COVID-19 hospitalizations starting in February 2021. The benefit was already noticed 3-4 weeks after the first dose, regardless of the vaccine modality.

CONCLUSIONS

COVID-19 hospitalizations increased exponentially with age in all three peaks of SARS-CoV-2 infection in Spain. Early mass vaccination of people over 60 years of age prevented a fourth wave of COVID-19 hospitalizations during the spring of 2021.

Propagation Analysis of COVID-19: An SIR Model-Based Investigation of the Pandemic

The paper investigates the spread pattern and dynamics of Covid-19 propagation based on SIR model. Using the model dynamics, an analytical estimation has been obtained for virus span, its longevity, growing pattern, etc. Experimental simulations are carried out on the data of four regions of India over a period of two months of country-wide lockdown. The analysis illustrates the effect of lockdown on the contact rate and its implication. Simulation results illustrate that there is a cut-down in effective contact rate by a considerable factor ranging from 2 to 4 for the selected regions. Further, the estimates for the vaccines to be developed, maximum range and span of the disease can be also estimated. Results portray that the SIR model is a significant tool to cast the dynamics and predictions of Covid-19 outbreak in comparison to other epidemic models. The study demonstrates the progression of real time data in accordance with the SIR model with high accuracy.

From SIR to SEAIRD: A novel data-driven modeling approach based on the Grey-box System Theory to predict the dynamics of COVID-19

Common compartmental modeling for COVID-19 is based on a priori knowledge and numerous assumptions. Additionally, they do not systematically incorporate asymptomatic cases. Our study aimed at providing a framework for data-driven approaches, by leveraging the strengths of the grey-box system theory or grey-box identification, known for its robustness in problem solving under partial, incomplete, or uncertain data. Empirical data on confirmed cases and deaths, extracted from an open source repository were used to develop the SEAIRD compartment model. Adjustments were made to fit current knowledge on the COVID-19 behavior. The model was implemented and solved using an Ordinary Differential Equation solver and an optimization tool. A cross-validation technique was applied, and the coefficient of determination R² was computed in order to evaluate the goodness-of-fit of the model. Key epidemiological parameters were finally estimated and we provided the rationale for the construction of SEAIRD model. When applied to Brazil’s cases, SEAIRD produced an excellent agreement to the data, with an R² ≥ 90%. The probability of COVID-19 transmission was generally high (≥ 95%). On the basis of a 20-day modeling data, the incidence rate of COVID-19 was as low as 3 infected cases per 100,000 exposed persons in Brazil and France. Within the same time frame, the fatality rate of COVID-19 was the highest in France (16.4%) followed by Brazil (6.9%), and the lowest in Russia (≤ 1%). SEAIRD represents an asset for modeling infectious diseases in their dynamical stable phase, especially for new viruses when pathophysiology knowledge is very limited.