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Obbard DJ. The genome sequence of a drosophilid fruit fly, Drosophila funebris (Fabricius, 1789). Wellcome Open Res 2023; 8:437. [PMID: 38798998 PMCID: PMC11126897 DOI: 10.12688/wellcomeopenres.20035.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/29/2023] [Indexed: 05/29/2024] Open
Abstract
We present a genome assembly from an individual male Drosophila funebris (drosophilid fruit fly; Arthropoda; Insecta; Diptera; Drosophilidae). The genome sequence is 181.1 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.15 kilobases in length.
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Affiliation(s)
- Darren J. Obbard
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
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Del Pino F, Jara C, Pino L, Medina-Muñoz MC, Alvarez E, Godoy-Herrera R. The Identification of Congeners and Aliens by Drosophila Larvae. PLoS One 2015; 10:e0136363. [PMID: 26313007 PMCID: PMC4552012 DOI: 10.1371/journal.pone.0136363] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Accepted: 07/31/2015] [Indexed: 02/01/2023] Open
Abstract
We investigated the role of Drosophila larva olfactory system in identification of congeners and aliens. We discuss the importance of these activities in larva navigation across substrates, and the implications for allocation of space and food among species of similar ecologies. Wild type larvae of cosmopolitan D. melanogaster and endemic D. pavani, which cohabit the same breeding sites, used species-specific volatiles to identify conspecifics and aliens moving toward larvae of their species. D. gaucha larvae, a sibling species of D. pavani that is ecologically isolated from D. melanogaster, did not respond to melanogaster odor cues. Similar to D. pavani larvae, the navigation of pavani female x gaucha male hybrids was influenced by conspecific and alien odors, whereas gaucha female x pavani male hybrid larvae exhibited behavior similar to the D. gaucha parent. The two sibling species exhibited substantial evolutionary divergence in processing the odor inputs necessary to identify conspecifics. Orco (Or83b) mutant larvae of D. melanogaster, which exhibit a loss of sense of smell, did not distinguish conspecific from alien larvae, instead moving across the substrate. Syn97CS and rut larvae of D. melanogaster, which are unable to learn but can smell, moved across the substrate as well. The Orco (Or83b), Syn97CS and rut loci are necessary to orient navigation by D. melanogaster larvae. Individuals of the Trana strain of D. melanogaster did not respond to conspecific and alien larval volatiles and therefore navigated randomly across the substrate. By contrast, larvae of the Til-Til strain used larval volatiles to orient their movement. Natural populations of D. melanogaster may exhibit differences in identification of conspecific and alien larvae. Larval locomotion was not affected by the volatiles.
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Affiliation(s)
- Francisco Del Pino
- Laboratorio de Etología, Genética y Evolución de la Conducta, Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Claudia Jara
- Laboratorio de Etología, Genética y Evolución de la Conducta, Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Luis Pino
- Laboratorio de Etología, Genética y Evolución de la Conducta, Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - María Cristina Medina-Muñoz
- Departamento de Biología, Facultad de Ciencias, Universidad de Playa Ancha de Ciencias de la Educación, Valparaíso, Chile
| | - Eduardo Alvarez
- Laboratorio de Etología, Genética y Evolución de la Conducta, Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Raúl Godoy-Herrera
- Laboratorio de Etología, Genética y Evolución de la Conducta, Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
- * E-mail:
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Fanson BG, Fanson KV, Taylor PW. Sex differences in insect immune function: a consequence of diet choice? Evol Ecol 2013. [DOI: 10.1007/s10682-013-9638-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Bendesky A, Bargmann CI. Genetic contributions to behavioural diversity at the gene-environment interface. Nat Rev Genet 2011; 12:809-20. [PMID: 22064512 DOI: 10.1038/nrg3065] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Recent work on behavioural variation within and between species has furthered our understanding of the genetic architecture of behavioural traits, the identities of relevant genes and the ways in which genetic variants affect neuronal circuits to modify behaviour. Here we review our understanding of the genetics of natural behavioural variation in non-human animals and highlight the implications of these findings for human genetics. We suggest that gene-environment interactions are central to natural genetic variation in behaviour and that genes affecting neuromodulatory pathways and sensory processing are preferred sites of naturally occurring mutations.
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Affiliation(s)
- Andres Bendesky
- Howard Hughes Medical Institute, Laboratory for Neural Circuits and Behavior, The Rockefeller University, New York, New York 10065, USA
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Del Pino F, Salgado E, Godoy-Herrera R. Plasticity and genotype × environment interactions for locomotion in Drosophila melanogaster larvae. Behav Genet 2011; 42:162-9. [PMID: 21818661 DOI: 10.1007/s10519-011-9490-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Accepted: 07/20/2011] [Indexed: 11/30/2022]
Abstract
Locomotion is a primary means by which animals interact with the world. To understand the contribution of genotype × environment interactions to individual differences in D. melanogaster larval locomotion we investigated phenotypic sensitivity to environmental changes in four strains of this species and their F1 hybrids. We also investigated to what extent flexibility and plasticity of locomotion depend upon larval age. Specifically, we examined larval locomotion at 48 and 96 h of development on three different substrates. Locomotion was influenced by the structure of the substrate, but this depended on both the genotype and larval age. At 48 h of larval development phenotypic variation in locomotion was attributable to both genotype × environment interactions and genotypic differences among the larvae, while at 96 h of age, differences were mainly due to genotype × environment interactions. An analysis of variance of the 4 × 4 diallel cross made at 48 and 96 h of development showed, depending on the cross, either dominance to increase/decrease locomotion, overdominance to increase/decrease locomotion, or no dominance to increase/decrease locomotion. Furthermore, the diversity of behavioral responses in the F1 hybrids was greater at 96 than at 48 h of larval development. Our results demonstrate that genotype × environment interactions result in plasticity of D. melanogaster larval locomotion, which makes sense in light of the fact that larvae, in the wild, develop in heterogeneous and rapidly changing environments.
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Affiliation(s)
- Francisco Del Pino
- Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Independencia 1027, Casilla, 70061, Santiago-7, Chile
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