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Tong ZB, Huang R, Wang Y, Klumpp-Thomas CA, Braisted JC, Itkin Z, Shinn P, Xia M, Simeonov A, Gerhold DL. The Toxmatrix: Chemo-Genomic Profiling Identifies Interactions That Reveal Mechanisms of Toxicity. Chem Res Toxicol 2018; 31:127-136. [PMID: 29156121 PMCID: PMC9724813 DOI: 10.1021/acs.chemrestox.7b00290] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
A chemical genomics "Toxmatrix" method was developed to elucidate mechanisms of cytotoxicity using neuronal models. Quantitative high-throughput screening (qHTS) was applied to systematically screen each toxicant against a panel of 70 modulators, drugs or chemicals that act on a known target, to identify interactions that either protect or sensitize cells to each toxicant. Thirty-two toxicants were tested at 10 concentrations for cytotoxicity to SH-SY5Y human neuroblastoma cells, with results fitted to the Hill equation to determine an IC50 for each toxicant. Thirty-three toxicant:modulator interactions were identified in SH-SY5Y cells for 14 toxicants, as modulators that shifted toxicant IC50 values lower or higher. The target of each modulator that sensitizes cells or protects cells from a toxicant suggests a mode of toxicant action or cellular adaptation. In secondary screening, we tested modulator-toxicant pairs identified from the SH-SY5Y primary screening for interactions in three differentiated neuronal human cell lines: dSH-SY5Y, conditionally immortalized dopaminergic neurons (LUHMES), and neural stem cells. Twenty toxicant-modulator pairs showed pronounced interactions in one or several differentiated cell models. Additional testing confirmed that several modulators acted through their primary targets. For example, several chelators protected differentiated LUHMES neurons from four toxicants by chelation of divalent cations and buthionine sulphoximine sensitized cells to 6-hydroxydopamine and 4-(methylamino)phenol hemisulfate by blocking glutathione synthesis. Such modulators that interact with multiple neurotoxicants suggest these may be vulnerable toxicity pathways in neurons. Thus, the Toxmatrix method is a systematic high-throughput approach that can identify mechanisms of toxicity and cellular adaptation.
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Affiliation(s)
- Zhi-Bin Tong
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Ruili Huang
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Yuhong Wang
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Carleen A. Klumpp-Thomas
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - John C. Braisted
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Zina Itkin
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Paul Shinn
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Menghang Xia
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - Anton Simeonov
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
| | - David L. Gerhold
- National Center for Advancing Translational Sciences (NCATS), National Institutes of Health, 9800 Medical Center Drive C-345E, Bethesda, Maryland 20892
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