Transcriptomic responses of the clam Meretrix meretrix to the organophosphorus pesticide (dimethoate)

Ocean acidification induces tissue-specific interactions with copper toxicity on antioxidant defences in viscera and gills of Asiatic hard clam Meretrix petechialis (Lamarck, 1818)

Toxicity of contaminants in organisms under ocean acidification (OA) has attracted increasing attention in ecotoxicological studies. This study investigated how pCO₂-driven OA affected waterborne copper (Cu) toxicity in antioxidant defences in viscera and gills of Asiatic hard clam Meretrix petechialis (Lamarck, 1818). Clams were continuously exposed to Cu at ambient relevant (0/no metal exposure, 10 and 50 μg L^-1) and polluted-high (100 μg L^-1) concentrations in unacidified (pH 8.10) and acidified (pH 7.70/moderate OA and 7.30/extreme OA) seawater for 21 days. Following coexposure, metal bioaccumulation and responses of antioxidant defence-related biomarkers to OA and Cu coexposure were investigated. Results showed that metal bioaccumulation was positively correlated with waterborne metal concentrations but was not notably influenced by OA conditions. Both Cu and OA affected the antioxidant responses to environmental stress. Additionally, OA induced tissue-specific interactions with Cu on antioxidant defences, varying with exposure conditions. In unacidified seawater, antioxidant biomarkers were activated to defend against oxidative stress induced by Cu and prevented clams from lipid peroxidation (LPO or MDA), but failed to defend against DNA damage (8-OHdG). OA exacerbated Cu toxicity in antioxidant defences and increased LPO levels in tissues. Gills and viscera adopted adaptive antioxidant defence strategies to manage oxidative stress, with the former being more vulnerable to oxidative stress than the latter. MDA and 8-OHdG were sensitive to OA and Cu exposure, respectively, and were useful bioindicators for assessing oxidative stress. Integrated biomarker response (IBR) and PCA can reflect the integrative responses of antioxidant biomarkers to environmental stress and illuminate the contributions of specific biomarkers to antioxidant defence strategies. The findings provided insights for understanding antioxidant defences against metal toxicity in marine bivalves under OA scenarios, which is essential into managing wild populations.

Advances in organophosphorus pesticides pollution: Current status and challenges in ecotoxicological, sustainable agriculture, and degradation strategies

Organophosphorus pesticides (OPPs) are one of the most widely used types of pesticide that play an important role in the production process due to their effects on preventing pathogen infection and increasing yield. However, in the early development and application of OPPs, their toxicological effects and the issue of environmental pollution were not considered. With the long-term overuse of OPPs, their hazards to the ecological environment (including soil and water) and animal health have attracted increasing attention. Therefore, this review first clarified the classification, characteristics, applications of various OPPs, and the government's restriction requirements on various OPPs. Second, the toxicological effects and metabolic mechanisms of OPPs and their metabolites were introduced in organisms. Finally, the existing methods of degrading OPPs were summarized, and the challenges and further addressing strategy of OPPs in the sustainable development of agriculture, the environment, and ecology were prospected. However, methods to solve the environmental and ecological problems caused by OPPs from the three aspects of use source, use process, and degradation methods were proposed, which provided a theoretical basis for addressing the stability of the ecological environment and improving the structure of the pesticide industry in the future.

14-3-3ζ and 14-3-3ε are involved in innate immune responses in Pacific abalone (Haliotis discus hannai)

The 14-3-3 proteins play important roles in various cellular processes by binding to different ligands, but little is known about these proteins in mollusks. In this study, two 14-3-3 cDNAs were identified from the Pacific abalone Haliotis discus hannai (designated 14-3-3ζ and 14-3-3ε), possessing 59.40% identity with each other. Both genes were predominantly expressed in the gills of unchallenged abalones, and their mRNA signals could also be detected in several other tissues, including the mantle, hepatopancreas and ovary. However, after Vibrio harveyi challenge, hemocytes were induced significantly (p < 0.01). Meanwhile, phagocytosis was inhibited, but apoptosis, reactive oxygen species formation, and caspase 3 expression were significantly induced (p < 0.01), and they were all suppressed with 14-3-3ζ knockdown (p < 0.01). The differences were that silencing 14-3-3ε reverted the decline in the phagocytic rate derived from bacterial infection, while ROS formation was not influenced significantly. In addition, the expression levels of several antimicrobial peptide and proinflammatory cytokine genes were also decreased with the silencing of 14-3-3 genes. However, with the knockdown of 14-3-3ζ, the expression of 14-3-3ε was further significantly increased (p < 0.01), and vice versa. Overall, our results suggested that 14-3-3ζ and 14-3-3ε should play important roles in innate immunity against V. harveyi infection.

Immunological Responses of Marine Bivalves to Contaminant Exposure: Contribution of the -Omics Approach

The increasing number of data studies on the biological impact of anthropogenic chemicals in the marine environment, together with the great development of invertebrate immunology, has identified marine bivalves as a key invertebrate group for studies on immunological responses to pollutant exposure. Available data on the effects of contaminants on bivalve immunity, evaluated with different functional and molecular endpoints, underline that individual functional parameters (cellular or humoral) and the expression of selected immune-related genes can distinctly react to different chemicals depending on the conditions of exposure. Therefore, the measurement of a suite of immune biomarkers in hemocytes and hemolymph is needed for the correct evaluation of the overall impact of contaminant exposure on the organism's immunocompetence. Recent advances in -omics technologies are revealing the complexity of the molecular players in the immune response of different bivalve species. Although different -omics represent extremely powerful tools in understanding the impact of pollutants on a key physiological function such as immune defense, the -omics approach has only been utilized in this area of investigation in the last few years. In this work, available information obtained from the application of -omics to evaluate the effects of pollutants on bivalve immunity is summarized. The data shows that the overall knowledge on this subject is still quite limited and that to understand the environmental relevance of any change in immune homeostasis induced by exposure to contaminants, a combination of both functional assays and cutting-edge technology (transcriptomics, proteomics, and metabolomics) is required. In addition, the utilization of metagenomics may explain how the complex interplay between the immune system of bivalves and its associated bacterial communities can be modulated by pollutants, and how this may in turn affect homeostatic processes of the host, host–pathogen interactions, and the increased susceptibility to disease. Integrating different approaches will contribute to knowledge on the mechanism responsible for immune dysfunction induced by pollutants in ecologically and economically relevant bivalve species and further explain their sensitivity to multiple stressors, thus resulting in health or disease.

Characterization and molecular evolution of claudin genes in the Pungitius sinensis

Claudins are a family of integrated membrane-bound proteins involving in paracellular tightness, barrier forming, ion permeability, and substrate selection at tight junctions of chordate epithelial and endothelial cells. Here, 39 putative claudin genes were identified in the Pungitius sinensis based on the high throughput RNA-seq. Conservative motif distribution in each group suggested functional relevance. Divergence of duplicated genes implied the species' adaptation to the environment. In addition, selective pressure analyses identified one site, which may accelerate functional divergence in this protein family. Pesticides cause environmental pollution and have a serious impact on aquatic organisms when entering the water. The expression pattern of most claudin genes was affected by organophosphorus pesticide, indicating that they may be involved in the immune regulation of organisms and the detoxification of xenobiotics. Protein-protein network analyses also exhibited 439 interactions, which implied the functional diversity. It will provide some references for the functional study on claudin genes.

Molecular Evolution and Characterization of Fish Stathmin Genes

Simple Summary

Stathmin is a highly conserved microtubule remodeling protein. Here, 175 putative stathmin genes were identified in 27 species of fish. Gene organization, motif distribution, divergence of duplicated genes, functional divergence, synteny relationship, and protein-protein interaction were performed to investigate their evolutionary history. In addition, expression profiles of some stathmins were examined under dimethoate treatment. The results will provide useful references for further functional analyses.

Abstract

Stathmin is a highly conserved microtubule remodeling protein, involved in many biological processes such as signal transduction, cell proliferation, neurogenesis and so on. However, little evolutional information has been reported about this gene family in fish. In this study, 175 stathmin genes were identified in 27 species of fish. Conserved exon-intron structure and motif distributions were found in each group. Divergence of duplicated genes implied the species’ adaptation to the environment. Functional divergence suggested that the evolution of stathmin is mainly influenced by purifying selection, and some residues may undergo positive selection. Moreover, synteny relationship near the stathmin locus was relatively conserved in some fish. Network analyses also exhibited 74 interactions, implying functional diversity. The expression pattern of some stathmin genes was also investigated under pesticide stress. These will provide useful references for their functional research in the future.

A First Insight into North American Plant Pathogenic Fungi Armillaria Sinapina Transcriptome

Armillaria sinapina, a fungal pathogen of primary timber species of North American forests, causes white root rot disease that ultimately kills the trees. A more detailed understanding of the molecular mechanisms underlying this illness will support future developments on disease resistance and management, as well as in the decomposition of cellulosic material for further use. In this study, RNA-Seq technology was used to compare the transcriptome profiles of A. sinapina fungal culture grown in yeast malt broth medium supplemented or not with betulin, a natural compound of the terpenoid group found in abundance in white birch bark. This was done to identify enzyme transcripts involved in the metabolism (redox reaction) of betulin into betulinic acid, a potent anticancer drug. De novo assembly and characterization of A. sinapina transcriptome was performed using Illumina technology. A total of 170,592,464 reads were generated, then 273,561 transcripts were characterized. Approximately, 53% of transcripts could be identified using public databases with several metabolic pathways represented. A total of 11 transcripts involved in terpenoid biosynthesis were identified. In addition, 25 gene transcripts that could play a significant role in lignin degradation were uncovered, as well as several redox enzymes of the cytochromes P450 family. To our knowledge, this research is the first transcriptomic study carried out on A. sinapina.

Effect of dimethoate in controlling Monolepta hieroglyphica (Motschulsky) and its distribution in maize by drip irrigation

BACKGROUND

Monolepta hieroglyphica (Motschulsky) is a primary pest of maize. The effect of dimethoate on controlling a M. hieroglyphica infestation was studied using drip irrigation. Field trials were conducted to determine the most effective application rate and water volume for dimethoate treatment in arid and semi-arid regions. The absorption, distribution and dissipation of dimethoate in maize and soil were examined.

RESULTS

Field trials showed that dimethoate at a rate of 2.70 kg a.i. ha^-1 and water volume of 200 m³  ha^-1 was the most effective treatment for controlling M. hieroglyphica. Dimethoate via drip irrigation showed longer persistence than dimethoate applied via artificial or unmanned air vehicle spraying. Different parts of the maize plant had a hysteresis effect on dimethoate absorption. Dimethoate was absorbed from the roots, transported upward, and enriched in the leaf. Dimethoate was mainly concentrated within a certain range near the emitter after drip irrigation. Terminal residues of dimethoate in maize grain were below detectable levels 42 days after treatment.

CONCLUSIONS

Dimethoate treatment via drip irrigation can control M. hieroglyphica infestation on maize. Results showed that dimethoate is safe for maize and the environment. This study provides guidance for the application of pesticides in arid and semi-arid areas. © 2019 Society of Chemical Industry.

Transcriptome-Based Identification and Molecular Evolution of the Cytochrome P450 Genes and Expression Profiling under Dimethoate Treatment in Amur Stickleback (Pungitius sinensis)

Cytochrome P450s (CYPs) are a family of membrane-bound mono-oxygenase proteins, which are involved in cell metabolism and detoxification of various xenobiotic substances. In this study, we identified 58 putative CYP genes in Amur stickleback (Pungitius sinensis) based on the transcriptome sequencing. Conserved motif distribution suggested their functional relevance within each group. Some present recombination events have accelerated the evolution of this gene family. Moreover, a few positive selection sites were identified, which may have accelerated the functional divergence of this family of proteins. Expression patterns of these CYP genes were investigated and indicated that most were affected by dimethoate treatment, suggesting that CYPs were involved in the detoxication of dimethoate. This study will provide a foundation for the further functional investigation of CYP genes in fishes.