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Palmer U, Puchta R. Wirt-Gast-Komplexe von [bfu.bfu.bfu]: Vorhersage von Ionenselektivitäten mittels quantenchemischer Rechnungen XIII. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES 2020. [DOI: 10.1515/znb-2020-0065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The CH2–O–C2H4–O–CH2 moieties in Lehn’s cryptand [2.2.2] have been substituted by 2,2′-bifurane groups to get the cryptand [bfu.bfu.bfu]. The ion selectivity of this new cryptand was investigated by DFT calculations (RB3LYP/LANL2DZp, RB3LYP/LACVP*, RBP86/LANL2DZp and RBP86/LACVP*) based on model equations and analysis of the [M ⊂ bfu.bfu.bfu]
n+ cryptate structures. The cryptand [bfu.bfu.bfu] is best suited for the alkali cations Na+ and K+, and the alkaline earth cation Sr2+ followed by Ca2+. The cavity of [bfu.bfu.bfu] is thus similar to that in [phen.phen.phen] or [bpy.bpy.bpy]. The selectivity of [bfu.bfu.bfu] is due to the flexibility of the OCCO und CN···NC dihedral angles. The results are independent of the selected DFT methods.
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Affiliation(s)
- Ursula Palmer
- Anorganische Chemie, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Egerlandstr. 1, 91058 Erlangen , Germany
| | - Ralph Puchta
- Anorganische Chemie, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Egerlandstr. 1, 91058 Erlangen , Germany
- Computer Chemie Center, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Nägelsbachstr. 25, 91052 Erlangen , Germany
- Zentralinstitut für Scientific Computing (ZISC) , Universität Erlangen-Nürnberg , Martensstr. 5a, 91058 Erlangen , Germany
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Hubbard CD, Chatterjee D, Oszajca M, Polaczek J, Impert O, Chrzanowska M, Katafias A, Puchta R, van Eldik R. Inorganic reaction mechanisms. A personal journey. Dalton Trans 2020; 49:4599-4659. [PMID: 32162632 DOI: 10.1039/c9dt04620h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This review covers highlights of the work performed in the van Eldik group on inorganic reaction mechanisms over the past two decades in the form of a personal journey. Topics that are covered include, from NO to HNO chemistry, peroxide activation in model porphyrin and enzymatic systems, the wonder-world of RuIII(edta) chemistry, redox chemistry of Ru(iii) complexes, Ru(ii) polypyridyl complexes and their application, relevant physicochemical properties and reaction mechanisms in ionic liquids, and mechanistic insight from computational chemistry. In each of these sections, typical examples of mechanistic studies are presented in reference to related work reported in the literature.
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Affiliation(s)
- Colin D Hubbard
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany.
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Dehghani N, Ghalami-Choobar B, Arabieh M, Dezhampanah H. Theoretical insight to the complexation of some transition metals with cryptand. Struct Chem 2019. [DOI: 10.1007/s11224-018-1268-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Puchta R, Walther D, März M, Begel S, van Eldik R. Host-Guest Complexes of Dodeka(ethylene)octamine: Prediction of Ion Selectivity by Quantum Chemical Calculations IX. Z Anorg Allg Chem 2019. [DOI: 10.1002/zaac.201800448] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ralph Puchta
- Lothar-von-Faber-Schule; Staatliche Fachoberschule Nürnberg; Schafhofstr. 25 90411 Nürnberg Germany
- Anorganische Chemie; Department für Chemie und Pharmazie; Universität Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
- Computer Chemistry Center; Department für Chemie und Pharmazie; Universität Erlangen-Nürnberg; Nägelsbachstr. 25 91052 Erlangen Germany
- Zentralinstitut für Scientific Computing (ZISC); Universität Erlangen-Nürnberg; Martensstr. 5a 91058 Erlangen Germany
| | - Daniel Walther
- Lothar-von-Faber-Schule; Staatliche Fachoberschule Nürnberg; Schafhofstr. 25 90411 Nürnberg Germany
| | - Matthias März
- Lothar-von-Faber-Schule; Staatliche Fachoberschule Nürnberg; Schafhofstr. 25 90411 Nürnberg Germany
| | - Svetlana Begel
- Anorganische Chemie; Department für Chemie und Pharmazie; Universität Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
| | - Rudi van Eldik
- Anorganische Chemie; Department für Chemie und Pharmazie; Universität Erlangen-Nürnberg; Egerlandstr. 1 91058 Erlangen Germany
- Faculty of Chemistry; Jagiellonian University; Gronostajowa 2 30-087 Krakow Poland
- Faculty of Chemistry; N. Copernicus University; Gagarina 7 87-100 Toruń Poland
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Begel S, Scheurer A, Puchta R, van Eldik R. Host-Guest Complexes of [TriPip222], the Piperazine Analogue of [2.2.2]: Prediction of Ion Selectivity by Quantum Chemical Calculations VIII[#]. Z Anorg Allg Chem 2016. [DOI: 10.1002/zaac.201600019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Jovanović S, Puchta R, Klisurić O, Bugarčić ŽD. Crystal structure of K[PtCl 3(caffeine)] and its interactions with important nitrogen-donor ligands. J COORD CHEM 2016. [DOI: 10.1080/00958972.2016.1146257] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Snežana Jovanović
- Faculty of Science, Department of Chemistry, University of Kragujevac, Kragujevac, Serbia
| | - Ralph Puchta
- Department of Chemistry and Pharmacy, Institute for Inorganic Chemistry, University of Erlangen-Nürnberg, Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nürnberg, Erlangen, Germany
| | - Olivera Klisurić
- Faculty of Sciences, Department of Physics, University of Novi Sad, Novi sad, Serbia
| | - Živadin D. Bugarčić
- Faculty of Science, Department of Chemistry, University of Kragujevac, Kragujevac, Serbia
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Begel S, Scheurer A, Puchta R. Saalfrank-type {Fe2L3} host–guest complexes – prediction of ion selectivity by quantum chemical calculations VII. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1076806] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Svetlana Begel
- Inorganic Chemistry, Department of Chemistry and Pharmacy, Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Andreas Scheurer
- Inorganic Chemistry, Department of Chemistry and Pharmacy, Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Ralph Puchta
- Inorganic Chemistry, Department of Chemistry and Pharmacy, Universität Erlangen-Nürnberg, Erlangen, Germany
- Department of Chemistry and Pharmacy, Computer Chemistry Center, Universität Erlangen-Nürnberg, Erlangen, Germany
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Despotović I. Complexation of some alkali and alkaline earth metal cations by macrocyclic compounds containing four pyridine subunits – a DFT study. NEW J CHEM 2015. [DOI: 10.1039/c5nj00459d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Tetradentate pyridine-based macrocyclic compounds offer useful ligands capable of efficient and selective complexation of M = Li+, Na+, K+, Be2+, Mg2+and Ca2+.
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Affiliation(s)
- Ines Despotović
- Quantum Organic Chemistry Group
- Department of Organic Chemistry and Biochemistry
- Ruđer Bošković Institute
- Zagreb 10000
- Croatia
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Host-guest complexes of calix[4]tubes--prediction of ion selectivity by quantum chemical calculations VI. J Mol Model 2014; 20:2200. [PMID: 24715047 DOI: 10.1007/s00894-014-2200-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2013] [Accepted: 03/02/2014] [Indexed: 10/25/2022]
Abstract
The selectivity of the bis(calix[4]arene)tetraethylene abbreviated as calix[4]tube for the endohedral complexation of alkali and alkaline earth metal ions, was predicted on the basis of structures and complex formation energies computed with three different quantum chemical methods: DFT LANL2DZp)/LANL2DZp), PM3/SPASS, and PM6. A comparison with published X-ray structures demonstrated that the most reliable results were achieved applying DFT calculations. The complexation of K⁺ and Ba²⁺ is most favorable, followed by the encapsulation of Rb⁺ and Sr²⁺, respectively. The flexibility of the tube, described by the torsion angles associated with the ethylene linkages between the calix[4]arene units and phenyl rings intersecting the plane of the four methylene carbon atoms, also makes an important contribution to its selectivity. In general, the cavity size is similar to [2.2.2] and [N2N2N2], the cryptands with the largest cavities previously studied in our group applying a similar protocol.
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Begel S, Puchta R, van Eldik R. Host-guest complexes of mixed glycol-bipyridine cryptands: prediction of ion selectivity by quantum chemical calculations, part V. Beilstein J Org Chem 2013; 9:1252-68. [PMID: 23843921 PMCID: PMC3701378 DOI: 10.3762/bjoc.9.142] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Accepted: 06/08/2013] [Indexed: 01/14/2023] Open
Abstract
The selectivity of the cryptands [2.2.bpy] and [2.bpy.bpy] for the endohedral complexation of alkali, alkaline-earth and earth metal ions was predicted on the basis of the DFT (B3LYP/LANL2DZp) calculated structures and complex-formation energies. The cavity size in both cryptands lay between that for [2.2.2] and [bpy.bpy.bpy], such that the complexation of K(+), Sr(2+) and Tl(3+) is most favorable. While the [2.2.bpy] is moderately larger, preferring Rb(+) complexation and demonstrating equal priority for Sr(2+) and Ba(2+), the slightly smaller [2.bpy.bpy] yields more stable cryptates with Na(+) and Ca(2+). Although the CH2-units containing molecular bars fixed at the bridgehead nitrogen atoms determine the flexibility of the cryptands, the twist angles associated with the bipyridine and glycol building blocks also contribute considerably.
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Affiliation(s)
- Svetlana Begel
- Inorganic Chemistry, Department of Chemistry and Pharmacy, University of Erlangen-Nürnberg, Egerlandstr. 1, 91058 Erlangen, Germany
| | - Ralph Puchta
- Inorganic Chemistry, Department of Chemistry and Pharmacy, University of Erlangen-Nürnberg, Egerlandstr. 1, 91058 Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nürnberg, Nägelsbachstr. 25, 91052 Erlangen, Germany
| | - Rudi van Eldik
- Inorganic Chemistry, Department of Chemistry and Pharmacy, University of Erlangen-Nürnberg, Egerlandstr. 1, 91058 Erlangen, Germany
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Boda A, Ali SM, Shenoi MRK, Rao H, Ghosh SK. DFT modeling on the suitable crown ether architecture for complexation with Cs⁺ and Sr²⁺ metal ions. J Mol Model 2010; 17:1091-108. [PMID: 20676707 DOI: 10.1007/s00894-010-0812-7] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Accepted: 07/14/2010] [Indexed: 12/01/2022]
Abstract
Crown ether architectures were explored for the inclusion of Cs(+) and Sr(2+) ions within nano-cavity of macrocyclic crown ethers using density functional theory (DFT) modeling. The modeling was undertaken to gain insight into the mechanism of the complexation of Cs(+) and Sr(2+) ion with this ligand experimentally. The selectivity of Cs(+) and Sr(2+) ions for a particular size of crown ether has been explained based on the fitting and binding interaction of the guest ions in the narrow cavity of crown ethers. Although, Di-Benzo-18-Crown-6 (DB18C6) and Di-Benzo-21-Crown-7 (DB21C7) provide suitable host architecture for Sr(2+) and Cs(+) ions respectively as the ion size match with the cavity of the host, but consideration of binding interaction along with the cavity matching both DB18C6 and DB21C7 prefers Sr(2+) ion. The calculated values of binding enthalpy of Cs metal ion with the crown ethers were found to be in good agreement with the experimental results. The gas phase binding enthalpy for Sr(2+) ion with crown ether was higher than Cs metal ion. The ion exchange reaction between Sr and Cs always favors the selection of Sr metal ion both in the gas and in micro-solvated systems. The gas phase selectivity remains unchanged in micro-solvated phase. We have demonstrated the effect of micro-solvation on the binding interaction between the metal ions (Cs(+) and Sr(2+)) and the macrocyclic crown ethers by considering micro-solvated metal ions up to eight water molecules directly attached to the metal ion and also by considering two water molecules attached to metal-ion-crown ether complexes. A metal ion exchange reaction involving the replacement of strontium ion in metal ion-crown ether complexes with cesium ion contained within a metal ion-water cluster serves as the basis for modeling binding preferences in solution. The calculated O-H stretching frequency of H(2)O molecule in micro-solvated metal ion-crown complexes is more red-shifted in comparison to hydrated metal ions. The calculated IR spectra can be compared with an experimental spectrum to determine the presence of micro-solvated metal ion-crown ether complexes in extractant phase.
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Affiliation(s)
- Anil Boda
- Chemical Engineering Group, Bhabha Atomic Research center, Mumbai 400085, India
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Alzoubi B, Puchta R, van Eldik R. Ligand-Exchange Processes on Solvated Zinc Cations: Water Exchange on [Zn(H2O)4(L)]2+⋅2 H2O (L=Heterocyclic Ligand). Chemistry 2010; 16:7300-8. [DOI: 10.1002/chem.200902264] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Puchta R, Pasgreta E, van Eldik R. Ligand exchange processes on the smallest solvated alkali and alkaline earth metal cations: An experimental and theoretical approach. ADVANCES IN INORGANIC CHEMISTRY 2009. [DOI: 10.1016/s0898-8838(09)00209-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Illner P, Puchta R, Heinemann FW, van Eldik R. Is bis(trifluoromethylsulfonyl)amide an innocent anion? X-Ray structure data and DFT calculations. Dalton Trans 2009:2795-801. [DOI: 10.1039/b820940e] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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