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Sarma M, Dutta J, Sarma M. Deciphering the Underlying Mechanism of Anion Binding by Asymmetrical Squaramide-Based Dipeptides. J Phys Chem B 2025; 129:4949-4961. [PMID: 40244004 DOI: 10.1021/acs.jpcb.5c01361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
Abstract
Anions are involved in many important processes, which has led to growing interest in designing new molecules to bind them effectively. Squaramides have gained considerable attention as effective anion receptors due to their dual hydrogen bond donor capability. Combining squaramide with biomolecules is a promising approach for designing and developing biomimetic receptors for anions with enhanced H-bonding abilities, particularly due to their functional versatility. The present study explores the mechanism of interaction of H2PO4- and HSO4- anions with three asymmetrical squaramide-based dipeptide receptors, emphasizing the role of noncovalent interactions. The conformational states of the receptors and the amino acids of the dipeptide with varying side chain lengths are the two major factors that influence these interactions. The conformational analysis of the receptors and their anion complexes performed using conformer-rotamer ensemble sampling tool (CREST) and molecular dynamics (MD) simulations, shows that the anti/anti conformations are the most abundant. Following the MD simulations, density functional theory (DFT) was used to perform electronic structure calculations on the 1:1 receptor-anion complexes. Our findings indicate that the N-H···O and O-H···O═C interactions primarily drive the formation of the receptor-anion complexes. Energy decomposition analysis based on absolutely localized molecular orbitals (ALMO-EDA) highlighted the role of the electrostatic energy (ΔEelst) in stabilizing the receptor-anion complexes. Further confirmation of the intermolecular N-H···O and O-H···O═C interactions in the complexes was attained through several analytic tools. This outcome lays a foundation for designing and developing more efficient and selective dipeptide-based anion receptors.
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Affiliation(s)
- Monalisha Sarma
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, India
| | - Juhi Dutta
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, India
| | - Manabendra Sarma
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, India
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Klarić D, Soldin Ž, Vincze A, Szolláth R, Balogh GT, Jug M, Galić N. Biopharmaceutical Characterization and Stability of Nabumetone-Cyclodextrins Complexes Prepared by Grinding. Pharmaceutics 2024; 16:1493. [PMID: 39771473 PMCID: PMC11679744 DOI: 10.3390/pharmaceutics16121493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 11/14/2024] [Accepted: 11/18/2024] [Indexed: 01/11/2025] Open
Abstract
Background: Nabumetone (NAB) is a poorly soluble nonsteroidal anti-inflammatory prodrug (BCS class II drug) whose solubility is significantly improved by complexation with cyclodextrins (CDs). Methods: The solid complexes, in a 1:1 molar ratio, were prepared by mechanochemical activation by grinding, using β-cyclodextrin (β-CD) and its derivatives, hydroxypropyl- and sulfobutylether-β-cyclodextrin (HP-β-CD and SBE-β-CD). The complexation was confirmed by differential scanning calorimetry (DSC), powder X-ray diffraction (PXRD), and attenuated total reflectance Fourier-transformed infrared spectroscopy (ATR-FTIR). Obtained products were further characterized regarding their solubility, in vitro dissolution, permeability and chemical stability. Results: Co-grinding with HP-β-CD and SBE-β-CD yielded products that showed in vitro dissolution profiles in hydrochloric acid medium (pH 1.2) that were substantially different from that of pure NAB, yielding dissolution efficiency enhancements of 34.86 ± 1.64 and 58.30 ± 0.28 times, respectively, for the optimized products. Their in vitro dissolution and gastrointestinal permeability were also studied in a low-volume environment at pH 6.8, corresponding to the intestinal environment. Both β-CD derivatives increased NAB dissolution rate and NAB mass transport across the biomimetic membrane. The effect of β-CD derivatives on NAB chemical stability was studied under the stress conditions by the developed and validated UHPLC-DAD-HRMS method. In acidic conditions, pure and complexed NAB was prone to hydrolytic degradation, yielding one degradation product-pharmacologically inactive NAB metabolite. However, under the oxidative conditions at elevated temperatures, 10 NAB degradation products were identified from co-ground samples. All systems were stable during photo- and long-term stability studies. Conclusions: NAB complexes with HP-β-CD and SBE-β-CD are promising candidates for pharmaceutical product development.
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Affiliation(s)
- David Klarić
- Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10 000 Zagreb, Croatia; (D.K.); (Ž.S.)
| | - Željka Soldin
- Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10 000 Zagreb, Croatia; (D.K.); (Ž.S.)
| | - Anna Vincze
- Department of Pharmaceutical Chemistry, Semmelweis University, Hőgyes Endre u. 9., H-1092 Budapest, Hungary; (A.V.); (R.S.); (G.T.B.)
- Center for Pharmacology and Drug Research & Development, Semmelweis University, Üllői u. 26. H-1092 Budapest, Hungary
| | - Rita Szolláth
- Department of Pharmaceutical Chemistry, Semmelweis University, Hőgyes Endre u. 9., H-1092 Budapest, Hungary; (A.V.); (R.S.); (G.T.B.)
- Center for Pharmacology and Drug Research & Development, Semmelweis University, Üllői u. 26. H-1092 Budapest, Hungary
| | - György Tibor Balogh
- Department of Pharmaceutical Chemistry, Semmelweis University, Hőgyes Endre u. 9., H-1092 Budapest, Hungary; (A.V.); (R.S.); (G.T.B.)
- Center for Pharmacology and Drug Research & Development, Semmelweis University, Üllői u. 26. H-1092 Budapest, Hungary
| | - Mario Jug
- Department of Pharmaceutical Technology, Faculty of Pharmacy and Biochemistry, University of Zagreb, A. Kovačića 1, 10 000 Zagreb, Croatia
| | - Nives Galić
- Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10 000 Zagreb, Croatia; (D.K.); (Ž.S.)
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Patyal M, Κaur K, Sharma P, Gupta N, Malik AK, Paul K. Nanoscale synthesis, structural elucidation, DFT, and biological activity of amide appended transition metal(II) macrocyclic complexes in drug delivery system. J COORD CHEM 2023. [DOI: 10.1080/00958972.2022.2151363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Meenakshi Patyal
- Department of Chemistry, Punjabi University, Patiala, Punjab, India
| | - Kirandeep Κaur
- Department of Chemistry, Punjabi University, Patiala, Punjab, India
| | - Promila Sharma
- Department of Chemistry, Punjabi University, Patiala, Punjab, India
| | - Nidhi Gupta
- Department of Chemistry, Punjabi University, Patiala, Punjab, India
| | | | - Kamaldeep Paul
- School of Chemistry and Biochemistry, Thapar Institute of Engineering and Technology, Patiala, Punjab, India
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Current Status of Quantum Chemical Studies of Cyclodextrin Host-Guest Complexes. Molecules 2022; 27:molecules27123874. [PMID: 35744998 PMCID: PMC9229288 DOI: 10.3390/molecules27123874] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/09/2022] [Accepted: 06/13/2022] [Indexed: 12/30/2022] Open
Abstract
This article aims to review the application of various quantum chemical methods (semi-empirical, density functional theory (DFT), second order Møller-Plesset perturbation theory (MP2)) in the studies of cyclodextrin host-guest complexes. The details of applied approaches such as functionals, basis sets, dispersion corrections or solvent treatment methods are analyzed, pointing to the best possible options for such theoretical studies. Apart from reviewing the ways that the computations are usually performed, the reasons for such studies are presented and discussed. The successful applications of theoretical calculations are not limited to the determination of stable conformations but also include the prediction of thermodynamic properties as well as UV-Vis, IR, and NMR spectra. It has been shown that quantum chemical calculations, when applied to the studies of CD complexes, can provide results unobtainable by any other methods, both experimental and computational.
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Abdi Y, Bensouilah N, Siziani D, Hamdi M, Silva AM, Boutemeur-Kheddis B. New complexes of manganese (II) and copper (II) derived from the two new furopyran-3, 4-dione ligands: Synthesis, spectral characterization, ESR, DFT studies and evaluation of antimicrobial activity. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127307] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ferino-Pérez A, Gamboa-Carballo JJ, Ranguin R, Levalois-Grützmacher J, Bercion Y, Gaspard S, Miranda-Quintana RA, Arias M, Jáuregui-Haza UJ. Evaluation of the molecular inclusion process of β-hexachlorocyclohexane in cyclodextrins. RSC Adv 2019; 9:27484-27499. [PMID: 35529240 PMCID: PMC9070783 DOI: 10.1039/c9ra04431k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 08/02/2019] [Indexed: 11/30/2022] Open
Abstract
The present work aimed to study the guest-host complexes of β-hexachlorocyclohexane (β-HCH), a pesticide with high environmental stability that can cause severe health problems, with the most common cyclodextrins (α-, β-, and γ-CDs). The formation reactions of these molecular inclusion complexes were addressed in this research. The multiple minima hypersurface methodology, quantum calculations based on density functional theory and a topological exploration of the electron density based on the quantum theory of atoms in molecules approach were used to characterize the interaction spaces of the pollutant with the three CDs. Additionally, charge distribution, charge transfer and dual descriptor analyses were employed to elucidate the driving forces involved in the formation of these molecular inclusion complexes. Three types of fundamental interactions were observed: total occlusion, partial occlusion and external interaction (non-occlusion). Finally, experiments were performed to confirm the formation of the studied complexes. The most stable complexes were obtained when γ-CD was the host molecule. The interactions between the pesticide and CDs have fundamentally dispersive natures, as was confirmed experimentally by spectroscopic results. All the obtained results suggest the possibility of using CDs for the purification and treatment of water polluted with β-HCH.
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Affiliation(s)
- Anthuan Ferino-Pérez
- Instituto Superior de Tecnologías y Ciencias Aplicadas (InSTEC), Universidad de La Habana La Habana CP 10600 Cuba
| | - Juan José Gamboa-Carballo
- Instituto Superior de Tecnologías y Ciencias Aplicadas (InSTEC), Universidad de La Habana La Habana CP 10600 Cuba
- Department of Chemistry and Applied Biosciences, Laboratory of Inorganic Chemistry, ETH Zürich CH-8093 Switzerland
| | - Ronald Ranguin
- Laboratoire COVACHIM M2E, Université des Antilles Pointe à Pitre 97157 Guadeloupe France
| | - Joëlle Levalois-Grützmacher
- Department of Chemistry and Applied Biosciences, Laboratory of Inorganic Chemistry, ETH Zürich CH-8093 Switzerland
- Department of Chemistry, Université des Antilles Pointe à Pitre 97157 Guadeloupe France
| | - Yves Bercion
- Laboratoire COVACHIM M2E, Université des Antilles Pointe à Pitre 97157 Guadeloupe France
| | - Sarra Gaspard
- Laboratoire COVACHIM M2E, Université des Antilles Pointe à Pitre 97157 Guadeloupe France
| | | | - Melvin Arias
- Instituto Tecnológico de Santo Domingo, Área de Ciencias Básicas y Ambientales Ave. de los Próceres Santo Domingo Dominican Republic
| | - Ulises J Jáuregui-Haza
- Instituto Superior de Tecnologías y Ciencias Aplicadas (InSTEC), Universidad de La Habana La Habana CP 10600 Cuba
- Instituto Tecnológico de Santo Domingo, Área de Ciencias Básicas y Ambientales Ave. de los Próceres Santo Domingo Dominican Republic
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Bezzina B, Djemil R, Bensouilah N. Quantitative and qualitative analyses of intermolecular interactions in neutral/deprotonated aspirin@β-CD inclusion complexes: QTAIM and NBO analyses. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2429-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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Quantitative conformational stability host-guest complex of Carvacrol and Thymol with β-cyclodextrin: a theoretical investigation. J INCL PHENOM MACRO 2017. [DOI: 10.1007/s10847-017-0740-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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