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Muralidharan A, Subramani M, Subramani D, Ramasamy S. Inquest for the interaction of canonical and non-canonical DNA/RNA bases with ternary based 2D Si 2BN and doped Si 2BN for biosensing applications. J Biomol Struct Dyn 2023; 42:12446-12477. [PMID: 37855316 DOI: 10.1080/07391102.2023.2270685] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 10/08/2023] [Indexed: 10/20/2023]
Abstract
Density functional theory (DFT) is invoked to investigate the interaction between the canonical (CN) and non-canonical (NC) bases with pristine Si2BN (Si2BN) and Phosphorous-doped Si2BN (P-dop-Si2BN) sheets. Inquest for the better sensing substrate is decided through the adsorption energy calculation which reveals that doping of phosphorous atom enhances the adsorption strength of AT (-83.74 kcal/mol) AU (-82.77 kcal/mol) and GC (-96.36 kcal/mol) base pairs. The CN and NC bases have higher adsorption energy than the previous reported values which concludes that the P-dop-Si2BN sheet will be optimal substrate to sense the bases. Meanwhile, the selected CN and NC (except hypoxanthine) bases interact with sheet in parallel manner which infers the π-π interaction with Si2BN and P-dop-Si2BN sheets. The energy gap variation (ΔEg%) of the P-dop-Si2BN complexes has a noticeable change, ranging from -24.75 to -197.28% which thrust the sensitivity of the P-dop-Si2BN sheet over the detection of CN and NC bases. The natural population analysis (NPA) and electron density difference map (EDDM) confirms that charges are transferred from CN and NC bases to Si2BN and P-dop-Si2BN sheet. The optical property of the P-dop-Si2BN complexes reveals that the noticeable red and blue shift in the visible and near-infrared regions (778 nm to 1143 nm) has been observed. Therefore, the above results conclude that the P-dop-Si2BN sheet plays a potential candidate to detect the CN and NC bases which contribute to the development of biosensors and DNA/RNA sequencing devices.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Akilesh Muralidharan
- Molecular Simulation Laboratory, Department of Physics, Bharathiar University, Coimbatore, Tamilnadu, India
| | - Mohanapriya Subramani
- Molecular Simulation Laboratory, Department of Physics, Bharathiar University, Coimbatore, Tamilnadu, India
| | - Divyakaaviri Subramani
- Molecular Simulation Laboratory, Department of Physics, Bharathiar University, Coimbatore, Tamilnadu, India
| | - Shankar Ramasamy
- Molecular Simulation Laboratory, Department of Physics, Bharathiar University, Coimbatore, Tamilnadu, India
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Aniline and chlorobenzene interaction studies on θ-arsenene nanosheet - a first-principles study. INORG CHEM COMMUN 2022. [DOI: 10.1016/j.inoche.2022.110081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Halawy SA, Osman AI, Mehta N, Abdelkader A, Vo DVN, Rooney DW. Adsorptive removal of some Cl-VOC's as dangerous environmental pollutants using feather-like γ-Al 2O 3 derived from aluminium waste with life cycle analysis. CHEMOSPHERE 2022; 295:133795. [PMID: 35124083 DOI: 10.1016/j.chemosphere.2022.133795] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 01/13/2022] [Accepted: 01/27/2022] [Indexed: 05/27/2023]
Abstract
Herein, we designed a cost-effective preparation method of nanocomposite γ-Al2O3 derived from Al-waste. The produced material has a feather-like morphology, and its adsorption of some chlorinated volatile organic compounds (Cl-VOC's) such as benzyl chloride, chloroform and carbon tetrachloride (C7H7Cl, CHCl3 and CCl4) was investigated due to their potential carcinogenic effect on humans. It showed a characteristic efficiency towards the adsorptive removal of these compounds over a long period, i.e., eight continuous weeks, at ambient temperature and atmospheric pressure. After 8-weeks, the adsorbed amounts of these compounds were determined as: 325.3 mg C7H7Cl, 247.6 mg CHCl3 and 253.3 mg CCl4 per g of γ-Al2O3, respectively. CCl4 was also found to be dissociatively adsorbed on the surface of γ-Al2O3, whereas CHCl3 and C7H7Cl were found to be associatively adsorbed. The prepared γ-Al2O3 has a relatively high surface area (i.e., 192.2 m2. g-1) and mesoporosity with different pore diameters in the range of 25-47 Å. Furthermore, environmental impacts of the nanocomposite γ-Al2O3 preparation were evaluated using life cycle assessment. For prepartion of adsorbent utilising 1 kg of scrap aluminium wire, it was observed that potential energy demand was 288 MJ, climate change potential was 19 kg CO2 equivalent, acidification potential was 0.115 kg SO2 equivalent and eutrophication potential was 0.018 kg PO43- equivalent.
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Affiliation(s)
- Samih A Halawy
- Nanocomposite Catalysts Lab., Chemistry Department, Faculty of Science at Qena, South Valley University, Qena, 83523, Egypt.
| | - Ahmed I Osman
- Nanocomposite Catalysts Lab., Chemistry Department, Faculty of Science at Qena, South Valley University, Qena, 83523, Egypt; School of Chemistry and Chemical Engineering, Queen's University Belfast, David Keir Building, Belfast BT9 5AG, Northern Ireland, UK.
| | - Neha Mehta
- School of Chemistry and Chemical Engineering, Queen's University Belfast, David Keir Building, Belfast BT9 5AG, Northern Ireland, UK; The Centre for Advanced Sustainable Energy, Queen's University Belfast, David Keir Building, Stranmillis Road, Belfast, BT9 5AG, Northern Ireland, UK
| | - Adel Abdelkader
- Nanocomposite Catalysts Lab., Chemistry Department, Faculty of Science at Qena, South Valley University, Qena, 83523, Egypt
| | - Dai-Viet N Vo
- Institute of Environmental Sciences, Nguyen Tat Thanh University, Ho Chi Minh City, 755414, Viet Nam; College of Medical and Health Science, Asia University, Taichung, Taiwan
| | - David W Rooney
- School of Chemistry and Chemical Engineering, Queen's University Belfast, David Keir Building, Belfast BT9 5AG, Northern Ireland, UK
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Princy Maria J, Nagarajan V, Chandiramouli R. First-principles studies on sensing properties of delta arsenene nanoribbons towards hexane and heptane molecules. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113256] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Bhuvaneswari R, Nagarajan V, Chandiramouli R. Interaction studies of diclofenac and ibuprofen molecules on armchair bismuthene nanotubes: A first-principles study. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111169] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Benjelloun M, Miyah Y, Akdemir Evrendilek G, Zerrouq F, Lairini S. Recent Advances in Adsorption Kinetic Models: Their Application to Dye Types. ARAB J CHEM 2021. [DOI: 10.1016/j.arabjc.2021.103031] [Citation(s) in RCA: 91] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
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Jyothi M, Nagarajan V, Chandiramouli R. Benzyl alcohol and 2-methyldecalin vapor adsorption studies on β-bismuthene sheets – A DFT outlook. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137819] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Bhuvaneswari R, Nagarajan V, Chandiramouli R. Physisorption of propane and butane vapors on novel Kagome antimonene sheets – A first-principles perception. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137693] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Bhuvaneswari R, Nagarajan V, Chandiramouli R. Molecular interaction studies of cumene and toluene on δ-arsenene nanosheet – a first-principles outlook. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1800853] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- R. Bhuvaneswari
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - V. Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - R. Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
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Bhuvaneswari R, Maria JP, Nagarajan V, Chandiramouli R. Novel ε-phosphorene nanosheet device for the detection of tear gas molecules – A first-principles research. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137353] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Sabitha R, Nagarajan V, Chandiramouli R. Computational Studies on the Interaction of Formaldehyde Vapor with δ‐Phosphorene Nanosheet: A DFT Insight. ChemistrySelect 2020. [DOI: 10.1002/slct.201904812] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ramasamy Sabitha
- School of Electrical & Electronics EngineeringSASTRA Deemed University, Tirumalaisamudram Thanjavur 613 401 India
| | - Veerappan Nagarajan
- School of Electrical & Electronics EngineeringSASTRA Deemed University, Tirumalaisamudram Thanjavur 613 401 India
| | - Ramanathan Chandiramouli
- School of Electrical & Electronics EngineeringSASTRA Deemed University, Tirumalaisamudram Thanjavur 613 401 India
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