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Sadia RT, Chen J, Zhang J. CT image denoising methods for image quality improvement and radiation dose reduction. J Appl Clin Med Phys 2024; 25:e14270. [PMID: 38240466 PMCID: PMC10860577 DOI: 10.1002/acm2.14270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/15/2023] [Accepted: 12/28/2023] [Indexed: 02/13/2024] Open
Abstract
With the ever-increasing use of computed tomography (CT), concerns about its radiation dose have become a significant public issue. To address the need for radiation dose reduction, CT denoising methods have been widely investigated and applied in low-dose CT images. Numerous noise reduction algorithms have emerged, such as iterative reconstruction and most recently, deep learning (DL)-based approaches. Given the rapid advancements in Artificial Intelligence techniques, we recognize the need for a comprehensive review that emphasizes the most recently developed methods. Hence, we have performed a thorough analysis of existing literature to provide such a review. Beyond directly comparing the performance, we focus on pivotal aspects, including model training, validation, testing, generalizability, vulnerability, and evaluation methods. This review is expected to raise awareness of the various facets involved in CT image denoising and the specific challenges in developing DL-based models.
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Affiliation(s)
- Rabeya Tus Sadia
- Department of Computer ScienceUniversity of KentuckyLexingtonKentuckyUSA
| | - Jin Chen
- Department of Medicine‐NephrologyUniversity of Alabama at BirminghamBirminghamAlabamaUSA
| | - Jie Zhang
- Department of RadiologyUniversity of KentuckyLexingtonKentuckyUSA
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Pilcevic D, Djuric Jovicic M, Antonijevic M, Bacanin N, Jovanovic L, Zivkovic M, Dragovic M, Bisevac P. Performance evaluation of metaheuristics-tuned recurrent neural networks for electroencephalography anomaly detection. Front Physiol 2023; 14:1267011. [PMID: 38033337 PMCID: PMC10682794 DOI: 10.3389/fphys.2023.1267011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 10/26/2023] [Indexed: 12/02/2023] Open
Abstract
Electroencephalography (EEG) serves as a diagnostic technique for measuring brain waves and brain activity. Despite its precision in capturing brain electrical activity, certain factors like environmental influences during the test can affect the objectivity and accuracy of EEG interpretations. Challenges associated with interpretation, even with advanced techniques to minimize artifact influences, can significantly impact the accurate interpretation of EEG findings. To address this issue, artificial intelligence (AI) has been utilized in this study to analyze anomalies in EEG signals for epilepsy detection. Recurrent neural networks (RNNs) are AI techniques specifically designed to handle sequential data, making them well-suited for precise time-series tasks. While AI methods, including RNNs and artificial neural networks (ANNs), hold great promise, their effectiveness heavily relies on the initial values assigned to hyperparameters, which are crucial for their performance for concrete assignment. To tune RNN performance, the selection of hyperparameters is approached as a typical optimization problem, and metaheuristic algorithms are employed to further enhance the process. The modified hybrid sine cosine algorithm has been developed and used to further improve hyperparameter optimization. To facilitate testing, publicly available real-world EEG data is utilized. A dataset is constructed using captured data from healthy and archived data from patients confirmed to be affected by epilepsy, as well as data captured during an active seizure. Two experiments have been conducted using generated dataset. In the first experiment, models were tasked with the detection of anomalous EEG activity. The second experiment required models to segment normal, anomalous activity as well as detect occurrences of seizures from EEG data. Considering the modest sample size (one second of data, 158 data points) used for classification models demonstrated decent outcomes. Obtained outcomes are compared with those generated by other cutting-edge metaheuristics and rigid statistical validation, as well as results' interpretation is performed.
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Affiliation(s)
- Dejan Pilcevic
- Clinic for Nephrology, Military Medical Academy, University of Defense, Belgrade, Serbia
| | | | - Milos Antonijevic
- Department of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Nebojsa Bacanin
- Department of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Luka Jovanovic
- Department of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Miodrag Zivkovic
- Department of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | | | - Petar Bisevac
- Department of Informatics and Computing, Singidunum University, Belgrade, Serbia
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Yousefpour Shahrivar R, Karami F, Karami E. Enhancing Fetal Anomaly Detection in Ultrasonography Images: A Review of Machine Learning-Based Approaches. Biomimetics (Basel) 2023; 8:519. [PMID: 37999160 PMCID: PMC10669151 DOI: 10.3390/biomimetics8070519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 10/05/2023] [Accepted: 10/26/2023] [Indexed: 11/25/2023] Open
Abstract
Fetal development is a critical phase in prenatal care, demanding the timely identification of anomalies in ultrasound images to safeguard the well-being of both the unborn child and the mother. Medical imaging has played a pivotal role in detecting fetal abnormalities and malformations. However, despite significant advances in ultrasound technology, the accurate identification of irregularities in prenatal images continues to pose considerable challenges, often necessitating substantial time and expertise from medical professionals. In this review, we go through recent developments in machine learning (ML) methods applied to fetal ultrasound images. Specifically, we focus on a range of ML algorithms employed in the context of fetal ultrasound, encompassing tasks such as image classification, object recognition, and segmentation. We highlight how these innovative approaches can enhance ultrasound-based fetal anomaly detection and provide insights for future research and clinical implementations. Furthermore, we emphasize the need for further research in this domain where future investigations can contribute to more effective ultrasound-based fetal anomaly detection.
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Affiliation(s)
- Ramin Yousefpour Shahrivar
- Department of Biology, College of Convergent Sciences and Technologies, Science and Research Branch, Islamic Azad University, Tehran, 14515-775, Iran
| | - Fatemeh Karami
- Department of Medical Genetics, Applied Biophotonics Research Center, Science and Research Branch, Islamic Azad University, Tehran, 14515-775, Iran
| | - Ebrahim Karami
- Department of Engineering and Applied Sciences, Memorial University of Newfoundland, St. John’s, NL A1B 3X5, Canada
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Lu J, Jin R, Wang M, Song E, Ma G. A bidirectional registration neural network for cardiac motion tracking using cine MRI images. Comput Biol Med 2023; 160:107001. [PMID: 37187138 DOI: 10.1016/j.compbiomed.2023.107001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 03/15/2023] [Accepted: 05/02/2023] [Indexed: 05/17/2023]
Abstract
Using cine magnetic resonance imaging (cine MRI) images to track cardiac motion helps users to analyze the myocardial strain, and is of great importance in clinical applications. At present, most of the automatic deep learning-based motion tracking methods compare two images without considering temporal information between MRI frames, which easily leads to the lack of consistency of the generated motion fields. Even though a small number of works take into account the temporal factor, they are usually computationally intensive or have limitations on image length. To solve this problem, we propose a bidirectional convolution neural network for motion tracking of cardiac cine MRI images. This network leverages convolutional blocks to extract spatial features from three-dimensional (3D) image registration pairs, and models the temporal relations through a bidirectional recurrent neural network to obtain the Lagrange motion field between the reference image and other images. Compared with previous pairwise registration methods, the proposed method can automatically learn spatiotemporal information from multiple images with fewer parameters. We evaluated our model on three public cardiac cine MRI datasets. The experimental results demonstrated that the proposed method can significantly improve the motion tracking accuracy. The average Dice coefficient between estimated segmentation and manual segmentation has reached almost 0.85 on the widely used Automatic Cardiac Diagnostic Challenge (ACDC) dataset.
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Affiliation(s)
- Jiayi Lu
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
| | - Renchao Jin
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China.
| | - Manyang Wang
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
| | - Enmin Song
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
| | - Guangzhi Ma
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
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5
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Mesh-free technique for enhancement of the lung CT image. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
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An application of deep dual convolutional neural network for enhanced medical image denoising. Med Biol Eng Comput 2023; 61:991-1004. [PMID: 36639550 DOI: 10.1007/s11517-022-02731-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 12/09/2022] [Indexed: 01/15/2023]
Abstract
This work investigates the medical image denoising (MID) application of the dual denoising network (DudeNet) model for chest X-ray (CXR). The DudeNet model comprises four components: a feature extraction block with a sparse mechanism, an enhancement block, a compression block, and a reconstruction block. The developed model uses residual learning to boost denoising performance and batch normalization to accelerate the training process. The name proposed for this model is dual convolutional medical image-enhanced denoising network (DCMIEDNet). The peak signal-to-noise ratio (PSNR) and structure similarity index measurement (SSIM) are used to assess the MID performance for five different additive white Gaussian noise (AWGN) levels of σ = 15, 25, 40, 50, and 60 in CXR images. Presented investigations revealed that the PSNR and SSIM offered by DCMIEDNet are better than several popular state-of-the-art models such as block matching and 3D filtering, denoising convolutional neural network, and feature-guided denoising convolutional neural network. In addition, it is also superior to the recently reported MID models like deep convolutional neural network with residual learning, real-valued medical image denoising network, and complex-valued medical image denoising network. Therefore, based on the presented experiments, it is concluded that applying the DudeNet methodology for DCMIEDNet promises to be quite helpful for physicians.
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Attention-based convolutional long short-term memory neural network for detection of patient-ventilator asynchrony from mechanical ventilation. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Petmezas G, Stefanopoulos L, Kilintzis V, Tzavelis A, Rogers JA, Katsaggelos AK, Maglaveras N. State-of-the-art Deep Learning Methods on Electrocardiogram Data: A Systematic Review (Preprint). JMIR Med Inform 2022; 10:e38454. [PMID: 35969441 PMCID: PMC9425174 DOI: 10.2196/38454] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 06/03/2022] [Accepted: 07/03/2022] [Indexed: 11/13/2022] Open
Abstract
Background Electrocardiogram (ECG) is one of the most common noninvasive diagnostic tools that can provide useful information regarding a patient’s health status. Deep learning (DL) is an area of intense exploration that leads the way in most attempts to create powerful diagnostic models based on physiological signals. Objective This study aimed to provide a systematic review of DL methods applied to ECG data for various clinical applications. Methods The PubMed search engine was systematically searched by combining “deep learning” and keywords such as “ecg,” “ekg,” “electrocardiogram,” “electrocardiography,” and “electrocardiology.” Irrelevant articles were excluded from the study after screening titles and abstracts, and the remaining articles were further reviewed. The reasons for article exclusion were manuscripts written in any language other than English, absence of ECG data or DL methods involved in the study, and absence of a quantitative evaluation of the proposed approaches. Results We identified 230 relevant articles published between January 2020 and December 2021 and grouped them into 6 distinct medical applications, namely, blood pressure estimation, cardiovascular disease diagnosis, ECG analysis, biometric recognition, sleep analysis, and other clinical analyses. We provide a complete account of the state-of-the-art DL strategies per the field of application, as well as major ECG data sources. We also present open research problems, such as the lack of attempts to address the issue of blood pressure variability in training data sets, and point out potential gaps in the design and implementation of DL models. Conclusions We expect that this review will provide insights into state-of-the-art DL methods applied to ECG data and point to future directions for research on DL to create robust models that can assist medical experts in clinical decision-making.
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Affiliation(s)
- Georgios Petmezas
- Lab of Computing, Medical Informatics and Biomedical-Imaging Technologies, The Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Leandros Stefanopoulos
- Lab of Computing, Medical Informatics and Biomedical-Imaging Technologies, The Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Vassilis Kilintzis
- Lab of Computing, Medical Informatics and Biomedical-Imaging Technologies, The Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Andreas Tzavelis
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, United States
| | - John A Rogers
- Department of Material Science, Northwestern University, Evanston, IL, United States
| | - Aggelos K Katsaggelos
- Department of Electrical and Computer Engineering, Northwestern University, Evanston, IL, United States
| | - Nicos Maglaveras
- Lab of Computing, Medical Informatics and Biomedical-Imaging Technologies, The Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
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Wu C, Zhou T, Tian Y, Wu J, Li J, Liu Z. A method for the early prediction of chronic diseases based on short sequential medical data. Artif Intell Med 2022; 127:102262. [DOI: 10.1016/j.artmed.2022.102262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 02/18/2022] [Accepted: 02/23/2022] [Indexed: 11/30/2022]
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A New Hybrid Based on Long Short-Term Memory Network with Spotted Hyena Optimization Algorithm for Multi-Label Text Classification. MATHEMATICS 2022. [DOI: 10.3390/math10030488] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
An essential work in natural language processing is the Multi-Label Text Classification (MLTC). The purpose of the MLTC is to assign multiple labels to each document. Traditional text classification methods, such as machine learning usually involve data scattering and failure to discover relationships between data. With the development of deep learning algorithms, many authors have used deep learning in MLTC. In this paper, a novel model called Spotted Hyena Optimizer (SHO)-Long Short-Term Memory (SHO-LSTM) for MLTC based on LSTM network and SHO algorithm is proposed. In the LSTM network, the Skip-gram method is used to embed words into the vector space. The new model uses the SHO algorithm to optimize the initial weight of the LSTM network. Adjusting the weight matrix in LSTM is a major challenge. If the weight of the neurons to be accurate, then the accuracy of the output will be higher. The SHO algorithm is a population-based meta-heuristic algorithm that works based on the mass hunting behavior of spotted hyenas. In this algorithm, each solution of the problem is coded as a hyena. Then the hyenas are approached to the optimal answer by following the hyena of the leader. Four datasets are used (RCV1-v2, EUR-Lex, Reuters-21578, and Bookmarks) to evaluate the proposed model. The assessments demonstrate that the proposed model has a higher accuracy rate than LSTM, Genetic Algorithm-LSTM (GA-LSTM), Particle Swarm Optimization-LSTM (PSO-LSTM), Artificial Bee Colony-LSTM (ABC-LSTM), Harmony Algorithm Search-LSTM (HAS-LSTM), and Differential Evolution-LSTM (DE-LSTM). The improvement of SHO-LSTM model accuracy for four datasets compared to LSTM is 7.52%, 7.12%, 1.92%, and 4.90%, respectively.
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Rawat S, Rana K, Kumar V. A novel complex-valued convolutional neural network for medical image denoising. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102859] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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12
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Usui K, Ogawa K, Goto M, Sakano Y, Kyougoku S, Daida H. Quantitative evaluation of deep convolutional neural network-based image denoising for low-dose computed tomography. Vis Comput Ind Biomed Art 2021; 4:21. [PMID: 34304321 PMCID: PMC8310822 DOI: 10.1186/s42492-021-00087-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 06/10/2021] [Indexed: 11/10/2022] Open
Abstract
To minimize radiation risk, dose reduction is important in the diagnostic and therapeutic applications of computed tomography (CT). However, image noise degrades image quality owing to the reduced X-ray dose and a possible unacceptably reduced diagnostic performance. Deep learning approaches with convolutional neural networks (CNNs) have been proposed for natural image denoising; however, these approaches might introduce image blurring or loss of original gradients. The aim of this study was to compare the dose-dependent properties of a CNN-based denoising method for low-dose CT with those of other noise-reduction methods on unique CT noise-simulation images. To simulate a low-dose CT image, a Poisson noise distribution was introduced to normal-dose images while convoluting the CT unit-specific modulation transfer function. An abdominal CT of 100 images obtained from a public database was adopted, and simulated dose-reduction images were created from the original dose at equal 10-step dose-reduction intervals with a final dose of 1/100. These images were denoised using the denoising network structure of CNN (DnCNN) as the general CNN model and for transfer learning. To evaluate the image quality, image similarities determined by the structural similarity index (SSIM) and peak signal-to-noise ratio (PSNR) were calculated for the denoised images. Significantly better denoising, in terms of SSIM and PSNR, was achieved by the DnCNN than by other image denoising methods, especially at the ultra-low-dose levels used to generate the 10% and 5% dose-equivalent images. Moreover, the developed CNN model can eliminate noise and maintain image sharpness at these dose levels and improve SSIM by approximately 10% from that of the original method. In contrast, under small dose-reduction conditions, this model also led to excessive smoothing of the images. In quantitative evaluations, the CNN denoising method improved the low-dose CT and prevented over-smoothing by tailoring the CNN model.
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Affiliation(s)
- Keisuke Usui
- Department of Radiological Technology, Faculty of Health Science, Juntendo University, Tokyo, 113-8421, Japan. .,Department of Radiation Oncology, Faculty of Medicine, Juntendo University, Tokyo, 113-8421, Japan.
| | - Koichi Ogawa
- Faculty of Science and Engineering, Hosei University, Tokyo, 184-8584, Japan
| | - Masami Goto
- Department of Radiological Technology, Faculty of Health Science, Juntendo University, Tokyo, 113-8421, Japan
| | - Yasuaki Sakano
- Department of Radiological Technology, Faculty of Health Science, Juntendo University, Tokyo, 113-8421, Japan
| | - Shinsuke Kyougoku
- Department of Radiological Technology, Faculty of Health Science, Juntendo University, Tokyo, 113-8421, Japan
| | - Hiroyuki Daida
- Department of Radiological Technology, Faculty of Health Science, Juntendo University, Tokyo, 113-8421, Japan
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Chu C, Zheng J, Zhou Y. Ultrasonic thyroid nodule detection method based on U-Net network. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 199:105906. [PMID: 33360682 DOI: 10.1016/j.cmpb.2020.105906] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Accepted: 12/06/2020] [Indexed: 06/12/2023]
Abstract
OBJECTIVE Aiming at the time consuming processing of existing thyroid nodule detection and difficulty in feature extraction, U-Net-based thyroid nodule detection is proposed to perform computed aided diagnosis. METHOD This paper proposes a mark-guided ultrasound deep network segmentation model of thyroid nodules. By comparing with VGG19, Inception V3, DenseNet 161, segmentation accuracy, segmentation edge and network operation time, it is found that the algorithm in this paper has relative advantages. RESULTS U-Net network-based ultrasound thyroid nodules segmented the nodule area overlapped with the manually depicted nodule area close to 100%, the segmentation accuracy rate was as high as 0.9785, and the U-Net segmentation result was closer to the manually depicted nodule. The accuracy of U-Net segmentation of the thyroid is about 3% higher than the other three networks. CONCLUSION The segmentation of nodules based on U-Net proposed in this paper significantly improves the segmentation accuracy of thyroid nodules with a small training data set, and provides a comprehensive reference for clinical diagnosis and treatment.
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Affiliation(s)
- Chen Chu
- Department of General Surgery, Fourth Affiliated Hospital of China Medical University, No. 4, Chongshan East Road, Huanggu District, Shenyang City, Liaoning Province, 110032, China.
| | - Jihui Zheng
- Department of Ultrasound, Affiliated Hospital of China Medical University, No. 4, Chongshan East Road, Huanggu District, Shenyang City, Liaoning Province, 110032, China.
| | - Yong Zhou
- Department of General Surgery, Fourth Affiliated Hospital of China Medical University, No. 4, Chongshan East Road, Huanggu District, Shenyang City, Liaoning Province, 110032, China.
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Jin Y, Qin C, Huang Y, Zhao W, Liu C. Multi-domain modeling of atrial fibrillation detection with twin attentional convolutional long short-term memory neural networks. Knowl Based Syst 2020. [DOI: 10.1016/j.knosys.2019.105460] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Abstract
In the automatic sorting process of express delivery, a three-segment code is used to represent a specific area assigned by a specific delivery person. In the process of obtaining the courier order information, the camera is affected by factors such as light, noise, and subject shake, which will cause the information on the courier order to be blurred, and some information will be lost. Therefore, this paper proposes an image text deblurring method based on a generative adversarial network. The model of the algorithm consists of two generative adversarial networks, combined with Wasserstein distance, using a combination of adversarial loss and perceptual loss on unpaired datasets to train the network model to restore the captured blurred images into clear and natural image. Compared with the traditional method, the advantage of this method is that the loss function between the input and output images can be calculated indirectly through the positive and negative generative adversarial networks. The Wasserstein distance can achieve a more stable training process and a more realistic generation effect. The constraints of adversarial loss and perceptual loss make the model capable of training on unpaired datasets. The experimental results on the GOPRO test dataset and the self-built unpaired dataset showed that the two indicators, peak signal-to-noise ratio (PSNR) and structural similarity index (SSIM), increased by 13.3% and 3%, respectively. The human perception test results demonstrated that the algorithm proposed in this paper was better than the traditional blur algorithm as the deblurring effect was better.
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