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Zhang X, Khalid M, Menhas S, Chi Y, Yang X, Chu S, Zhou P, Zhang D. Insights into effects of salt stress on the oil-degradation capacity, cell response, and key metabolic pathways of Bacillus sp. YM1 isolated from oily food waste compost. CHEMOSPHERE 2023; 341:140092. [PMID: 37678592 DOI: 10.1016/j.chemosphere.2023.140092] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 09/04/2023] [Accepted: 09/05/2023] [Indexed: 09/09/2023]
Abstract
A novel bacterial strain, Bacillus sp. YM1, was isolated from compost for the efficient degradation of oily food waste under salt stress. The strain's lipase activity, oil degradation ability, and tolerance to salt stress were evaluated in a liquid medium. Additionally, the molecular mechanisms (including key genes and functional processes) underlying the strain's salt-resistant degradation of oil were investigated based on RNA-Seq technology. The results showed that after 24 h of microbial degradation, the degradation rate of triglycerides in soybean oil was 80.23% by Bacillus sp. YM1 at a 30 g L-1 NaCl concentration. The metabolizing mechanism of long-chain triglycerides (C50-C58) by the YM1 strain, especially the biodegradation rate of triglycerides (C18:3/C18:3/C18:3), could reach 98.65%. The most substantial activity of lipase was up to 325.77 U·L-1 at a salinity of 30 g L-1 NaCl. During salt-induced stress, triacylglycerol lipase was identified as the crucial enzyme involved in oil degradation in Bacillus sp. YM1, and its synthesis was regulated by the lip gene (M5E02_13495). Bacillus sp. YM1 underwent adaptation to salt stress through various mechanisms, including the accumulation of free amino acids, betaine synthesis, regulation of intracellular Na+/K+ balance, the antioxidative response, spore formation, and germination. The key genes involved in Bacillus sp. YM1's adaptation to salt stress were responsible for the synthesis of glutamate 5-kinase, superoxide dismutase, catalase, Na+/H+ antiporter, general stress protein, and sporogenic proteins belonging to the YjcZ family. Results indicated that the isolated strain of Bacillus sp. YM1 could significantly degrade oil in a short time under salt stress. This study would introduce new salt-tolerant strains for coping with the biodegradation of oily food waste and provide gene targets for use in genetic engineering.
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Affiliation(s)
- Xia Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China
| | - Muhammad Khalid
- Department of Biology, College of Science and Technology, Wenzhou-Kean University, Wenzhou, 325000, China
| | - Saiqa Menhas
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China
| | - Yaowei Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China
| | - Xijia Yang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China; Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Ministry of Science and Technology, Ministry of Education, Shanghai, 200240, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China; Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Ministry of Science and Technology, Ministry of Education, Shanghai, 200240, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China; Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Ministry of Science and Technology, Ministry of Education, Shanghai, 200240, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, 200240, China.
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Affairs, Shanghai, 200240, China; Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Ministry of Science and Technology, Ministry of Education, Shanghai, 200240, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, 200240, China.
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Bo L, Kang X, Chen Z, Zhao Y, Wu S, Li J, Bao S. Isolation and identification of high-yielding alkaline phosphatase strain: a novel mutagenesis technique and optimization of fermentation conditions. Prep Biochem Biotechnol 2023; 53:1276-1287. [PMID: 36939156 DOI: 10.1080/10826068.2023.2188412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2023]
Abstract
Isolating and screening enzyme-producing strains from microorganisms and the commercial production of ALPs from microorganisms are of increasing interest. In this work, isolation and identification of high-yielding alkaline phosphatase strain were carried out using atmospheric and room temperature plasma mutagenesis (ARTP) for optimization of fermentation conditions. A strain of alkaline phosphatase-producing bacteria was screened from soil and identified by 16S rRNA gene sequencing as Bacillus amyloliquefaciens and named S-1. This strain had an alkaline phosphatase activity of 2594.73 U/L. Later, mutagenesis breeding of the alkaline phosphatase-producing S-1 strain was conducted using (ARTP), from which a higher alkaline phosphatase-producing positive mutant strain S-52 was screened. A central combination of five factors, including corn starch, yeast extract, metal ions, fermentation temperature and inoculum ratio, was then used to influence the activity of alkaline phosphatase. Results from the response surface methodology showed that the maximum enzyme activity of alkaline phosphatase was 12,110.6 U/L at corn starch, yeast extract and magnesium ions concentrations of 17.48 g/L, 18.052 g/L and 0.744 g/L, respectively; fermentation temperature of 37.192 °C; and inoculation ratio of 5.59%. This study is important for further exploring ARTP mutagenesis in B. amyloliquefaciens and the commercialization of ALPs.
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Affiliation(s)
- Le Bo
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Xin Kang
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Zuohui Chen
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Yue Zhao
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Si Wu
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Jie Li
- College of Life Science, Northeast Agricultural University, Harbin, China
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Yao D, Zhang K, Wu J. Available strategies for improved expression of recombinant proteins in Brevibacillus expression system: a review. Crit Rev Biotechnol 2020; 40:1044-1058. [PMID: 32781847 DOI: 10.1080/07388551.2020.1805404] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Brevibacillus offers great potential as a recombinant protein expression host because of its exceptional abilities to synthesize and excrete proteins and its low extracellular protease activity. Despite these strengths, effective recombinant expression strategies are still the key to achieving high-level expression of recombinant proteins in Brevibacillus due to individual differences among strains and target proteins. Many strategies have been developed to improve recombinant protein expression in Brevibacillus. This review begins by introducing the processes used to establish and apply the Brevibacillus expression system, and then critically discusses the strategies available for improving recombinant protein expression in Brevibacillus, including optimization of the host and the expression vector, co-expression of a fusion partner or foldase, and optimization of the fermentation process. Finally, the prospects for further improvement of recombinant protein expression based on Brevibacillus are also discussed. This review is intended to provide a strategic reference for scientists wanting to improve the expression of a specific recombinant protein in Brevibacillus or other expression systems.
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Affiliation(s)
- Dongbang Yao
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Biotechnology and Key Laboratory of Industrial Biotechnology Ministry of Education, Jiangnan University, Wuxi, China.,International Joint Laboratory on Food Safety, Jiangnan University, Wuxi, China
| | - Kang Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Biotechnology and Key Laboratory of Industrial Biotechnology Ministry of Education, Jiangnan University, Wuxi, China.,International Joint Laboratory on Food Safety, Jiangnan University, Wuxi, China
| | - Jing Wu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Biotechnology and Key Laboratory of Industrial Biotechnology Ministry of Education, Jiangnan University, Wuxi, China.,International Joint Laboratory on Food Safety, Jiangnan University, Wuxi, China
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