1
|
Reimann LK, Dalberto BT, Schneider PH, de Castro Silva Junior H, Rodembusch FS. Benzazole-Based ESIPT Fluorophores: Proton Transfer from the Chalcogen Perspective. A Combined Theoretical and Experimental Study. J Fluoresc 2024:10.1007/s10895-024-03595-y. [PMID: 38507128 DOI: 10.1007/s10895-024-03595-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 01/23/2024] [Indexed: 03/22/2024]
Abstract
In this study, we present a comprehensive photophysical investigation of ESIPT-reactive benzazole derivatives in both solution and the solid state. These derivatives incorporate different chalcogen atoms (O, S, and Se) into their structures, and we explore how these variations impact their electronic properties in both ground and excited states. Changes in the UV-Vis absorption and fluorescence emission spectra were analyzed and correlated with the chalcogen atom and solvent polarity. In general, the spectral band of the benzazole derivative containing selenium was redshifted in both the ground and excited states compared to that of its oxygen and sulfur counterparts. Furthermore, we observed that the solvent played a distinctive role in influencing the ESIPT process within these compounds, underscoring once again the significant influence of the chalcogen atom on their photophysical behavior. Theoretical calculations provided a deeper understanding of the molecular dynamics, electronic structures, and photophysical properties of these compounds. These calculations highlighted the effect of chalcogen atoms on the molecular geometry, absorption and emission characteristics, and intramolecular hydrogen bonding, revealing intricate details of the ESIPT mechanism. The integration of experimental and computational data offers a detailed view of the structural and electronic factors governing the photophysical behavior of benzazole derivatives.
Collapse
Affiliation(s)
- Louise Kommers Reimann
- Instituto de Química, Departamento de Química Orgânica, Universidade Federal Do Rio Grande Do Sul (UFRGS), PO Box 15003, Porto Alegre, Rio Grande Do Sul, ZIP Code91501-970, Brazil
| | - Bianca Thaís Dalberto
- Instituto de Química, Departamento de Química Orgânica, Universidade Federal Do Rio Grande Do Sul (UFRGS), PO Box 15003, Porto Alegre, Rio Grande Do Sul, ZIP Code91501-970, Brazil
| | - Paulo Henrique Schneider
- Instituto de Química, Departamento de Química Orgânica, Universidade Federal Do Rio Grande Do Sul (UFRGS), PO Box 15003, Porto Alegre, Rio Grande Do Sul, ZIP Code91501-970, Brazil
| | - Henrique de Castro Silva Junior
- Instituto de Química, Departamento de Química Orgânica, Universidade Federal Do Rio Grande Do Sul (UFRGS), PO Box 15003, Porto Alegre, Rio Grande Do Sul, ZIP Code91501-970, Brazil.
| | - Fabiano Severo Rodembusch
- Instituto de Química, Departamento de Química Orgânica, Universidade Federal Do Rio Grande Do Sul (UFRGS), PO Box 15003, Porto Alegre, Rio Grande Do Sul, ZIP Code91501-970, Brazil.
| |
Collapse
|
2
|
Aydin BO, Anil DA, Demir Y, Alagoz MA. Organohalogen chalcones: design, synthesis, ADMET prediction, molecular dynamics study and inhibition effect on acetylcholinesterase and carbonic anhydrase. Mol Divers 2024:10.1007/s11030-023-10774-9. [PMID: 38170420 DOI: 10.1007/s11030-023-10774-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Accepted: 11/17/2023] [Indexed: 01/05/2024]
Abstract
In an effort to discover potential acetylcholinesterase (AChE) and carbonic anhydrase (CA) inhibitors, a novel series of organohalogen chalcone derivatives (12-20, 23-30) was synthesized, and their chemical structures were characterized by spectral analysis. They showed a highly potent inhibition effect on AChE and hCAs (Ki values range from 5.07 ± 0.062 to 65.53 ± 4.36 nM for AChE, 13.54 ± 2.55 to 94.11 ± 10.39 nM for hCA I, and 5.21 ± 0.54 to 57.44 ± 3.12 nM for hCA II). In addition, the chalcone derivatives with the highest inhibitor score docked into the active site of the indicated metabolic enzyme receptors, and their absorption, metabolism, and toxic properties were evaluated according to ADMET's estimation.Compounds 16 and 19 exhibited the highest inhibition score, emerged as lead compounds, and inspired the development of more potent compounds.
Collapse
Affiliation(s)
- Busra Ozturk Aydin
- Department of Chemistry, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey
| | - Derya Aktas Anil
- Department of Chemistry, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey.
- Department of Chemistry and Chemical Process Technologies, Technical Sciences Vocational School, Ataturk University, 25240, Erzurum, Turkey.
| | - Yeliz Demir
- Department of Pharmacy Services, Nihat Delibalta Göle Vocational School, Ardahan University, 75002, Ardahan, Turkey
| | - Mehmet Abdullah Alagoz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Inonu University, Malatya, Turkey
| |
Collapse
|
3
|
Hegde V, O SC, Kulkarni NV, Mathew J. Synthesis and Characterization of Cobalt (II) Pincer Complexes and their Application as Dyes in Dye-Sensitized Solar Cells. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2023]
|
4
|
P. M M, S N, Kulkarni NV, Jagirdar BR, Jones WD. Guerbet upgrading of ethanol to n-butanol using Ru( iii) catalysts under air. NEW J CHEM 2023. [DOI: 10.1039/d3nj00535f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Abstract
A series of in situ prepared Ru(iii) complexes supported by easily accessible N-donor organic pincer ligands were used as catalysts in the Guerbet upgrading reaction of ethanol under aerobic conditions.
Collapse
Affiliation(s)
- Mahitha P. M
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Nakul S
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Naveen V. Kulkarni
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Balaji R. Jagirdar
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
| | - William D. Jones
- Department of Chemistry, University of Rochester, Rochester, New York 14450, USA
| |
Collapse
|
5
|
2-Phenyl substituted Benzimidazole derivatives: Design, synthesis, and evaluation of their antiproliferative and antimicrobial activities. Med Chem Res 2022. [DOI: 10.1007/s00044-022-02900-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
6
|
Yalcin-Ozkat G, Ersan RH, Ulger M, Ulger ST, Burmaoglu S, Yildiz I, Algul O. Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents. J Biomol Struct Dyn 2022; 41:2667-2686. [PMID: 35132948 DOI: 10.1080/07391102.2022.2036241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
The increase in the drug-resistant strains of Mycobacterium tuberculosis has led researchers to new drug targets. The development of new compounds that have effective inhibitory properties with the selective vital structure of Mycobacterium tuberculosis is required in new scientific approaches. The most important of these approaches is the development of inhibitor molecules for Mycobacterium cell wall targets. In this study, first of all, the antitubercular activity of 23 benzimidazole derivatives was experimentally determined. And then molecular docking studies were carried out with 4 different targets: Arabinosyltransferase C (EmbC), Filamentous Temperature Sensitive Mutant Z (FtsZ), Protein Tyrosine Phosphatase B (PtpB), and Decaprenylphosphoryl-β-D-ribose-2'-oxidase (DprE1). It has been determined that benzimidazole derivatives show activity through the DprE1 enzyme. It is known that DprE1, which has an important role in the synthesis of the cell envelope from Arabinogalactan, is also effective in the formation of drug resistance. Due to this feature, the DprE1 enzyme has become an important target for drug development studies. Also, it was chosen as a target for this study. This study aims to identify molecules that inhibit DprE1 for the development of more potent and selective antitubercular drugs. For this purpose, molecular docking studies by AutoDock Vina, and CDOCKER and molecular dynamics (MD) simulations and in silico ADME/Tox analysis were implemented for 23 molecules. The molecules exhibited binding affinity values of less than -8.0 kcal/mol. After determining the compound's anti-TB activities by a screening test, the best-docked results were detected using compounds 20, 21, and 30. It was found that 21, was the best molecule with its binding affinity value, which was supported by MD simulations and in silico ADME modeling results.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Gozde Yalcin-Ozkat
- Max Planck Institute for Dynamics of Complex Technical Systems, Molecular Simulations and Design Group, Magdeburg, Germany
- Faculty of Engineering, Bioengineering Department, Recep Tayyip Erdogan University, Rize, Turkey
| | - Ronak H. Ersan
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Mersin University, Mersin, Turkey
- Department of Medical Laboratory, Cihan University, Duhok, Iraq
| | - Mahmut Ulger
- Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Mersin University, Mersin, Turkey
| | - Seda T. Ulger
- Department of Medical Microbiology, Faculty of Medicine, Mersin University, Mersin, Turkey
| | - Serdar Burmaoglu
- Department of Chemistry, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Ilkay Yildiz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Ankara University, Ankara, Turkey
| | - Oztekin Algul
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Mersin University, Mersin, Turkey
| |
Collapse
|
7
|
Duran N, Polat MF, Aktas DA, Alagoz MA, Ay E, Cimen F, Tek E, Anil B, Burmaoglu S, Algul O. New chalcone derivatives as effective against SARS-CoV-2 agent. Int J Clin Pract 2021; 75:e14846. [PMID: 34519118 PMCID: PMC8646589 DOI: 10.1111/ijcp.14846] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 08/28/2021] [Accepted: 09/10/2021] [Indexed: 01/18/2023] Open
Abstract
AIMS Flavonoids and related compounds, such as quercetin-based antiviral drug Gene-Eden-VIR/Novirin, inhibit the protease of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The alkylated chalcones isolated from Angelica keiskei inhibit SARS-CoV proteases. In this study, we aimed to compare the anti-SARS CoV-2 activities of both newly synthesized chalcone derivatives and these two drugs. METHODS Determination of the potent antiviral activity of newly synthesized chalcone derivatives against SARS-CoV-2 by calculating the RT-PCR cycling threshold (Ct ) values. RESULTS Antiviral activities of the compounds varied because of being dose dependent. Compound 6, 7, 9, and 16 were highly effective against SARS-CoV-2 at the concentration of 1.60 µg/mL. Structure-based virtual screening was carried out against the most important druggable SARS-CoV-2 targets, viral RNA-dependent RNA polymerase, to identify putative inhibitors that could facilitate the development of potential anti-coronavirus disease-2019 drug candidates. CONCLUSIONS Computational analyses identified eight compounds inhibiting each target, with binding affinity scores ranging from -4.370 to -2.748 kcal/mol along with their toxicological, ADME, and drug-like properties.
Collapse
Affiliation(s)
- Nizami Duran
- Department of Medical MicrobiologyMedical FacultyMustafa Kemal UniversityAntakyaTurkey
| | - M. Fatih Polat
- Department of Pharmaceutical Basic SciencesFaculty of PharmacyErzincan Binali Yildirim UniversityErzincanTurkey
| | - Derya Anil Aktas
- Department of Chemistry and Chemical Process TechnologiesErzurum Vocational High SchoolAtatürk UniversityErzurumTurkey
| | - M. Abdullah Alagoz
- Department of Pharmaceutical ChemistryFaculty of PharmacyInonu UniversityMalatyaTurkey
| | - Emrah Ay
- Department of Medical MicrobiologyMedical FacultyMustafa Kemal UniversityAntakyaTurkey
| | - Funda Cimen
- Department of Medical MicrobiologyMedical FacultyMustafa Kemal UniversityAntakyaTurkey
| | - Erhan Tek
- Department of Medical MicrobiologyMedical FacultyMustafa Kemal UniversityAntakyaTurkey
| | - Baris Anil
- Department of ChemistryFaculty of ScienceAtatürk UniversityErzurumTurkey
| | - Serdar Burmaoglu
- Department of ChemistryFaculty of ScienceAtatürk UniversityErzurumTurkey
| | - Oztekin Algul
- Department of Pharmaceutical ChemistryFaculty of PharmacyMersin UniversityMersinTurkey
- Department of Pharmaceutical ChemistryFaculty of PharmacyErzincan Binali Yildirim UniversityErzincanTurkey
| |
Collapse
|