Filtered maximum likelihood expectation maximization based global reconstruction for bioluminescence tomography

Dictionary Learning Method Based on K-Sparse Approximation and Orthogonal Procrustes Analysis for Reconstruction in Bioluminescence Tomography

Bioluminescence tomography (BLT) is one kind of noninvasive optical molecular imaging technology, widely used to study molecular activities and disease progression inside live animals. By combining the optical propagation model and inversion algorithm, BLT enables three-dimensional imaging and quantitative analysis of light sources within organisms. However, challenges like light scattering and absorption in tissues, and the complexity of biological structures, significantly impact the accuracy of BLT reconstructions. Here, we propose a dictionary learning method based on K-sparse approximation and Orthogonal Procrustes analysis (KSAOPA). KSAOPA uses an iterative alternating optimization strategy, enhancing solution sparsity with k-coefficients Lipschitzian mappings for sparsity(K-LIMAPS) in the sparse coding stage, and reducing errors with Orthogonal Procrustes analysis in the dictionary update stage, leading to stable and precise reconstructions. We assessed the method performance through simulations and in vivo experiments, which showed that KSAOPA excels in localization accuracy, morphological recovery, and in vivo applicability compared to other methods.

Cone-beam X-ray luminescence computed tomography based on MLEM with adaptive FISTA initial image

BACKGROUND AND OBJECTIVE

As an emerging dual-mode optical molecular imaging, cone-beam X-ray luminescence computed tomography (CB-XLCT) has shown potential in early tumor diagnosis and other applications with increased depth and little autofluorescence. However, due to the low transfer efficiency of PNPs to convert X-ray energy to visible or near-infrared (NIR) light and X-ray dose limitation, the signal to noise ratio of projections is quite low, making the quality of CB-XLCT relatively poor.

METHODS

To improve the reconstruction quality of low-counts CB-XLCT imaging, an adaptive reconstruction algorithm (named ADFISTA-MLEM) based on the maximum likelihood expectation estimation (MLEM) framework is proposed for CB-XLCT reconstruction from Poisson distributed projections. In the proposed framework, the image reconstructed by fast iterative shrinkage-thresholding algorithm (FISTA) is used as the initial image for MLEM iterations to improve reconstruction accuracy, in which both the projection noise model and the sparsity constraint of the image could be considered. For relative quantitative imaging, a specific normalization is applied to the projection data and system matrix. To determine the hyperparameter of FISTA, which may be different for different projections, an adaptive strategy (ADFISTA) is then designed for adaptive update of the hyperparameter with reconstructed image in each iteration.

RESULTS AND CONCLUSIONS

Results from numerical simulations and phantom experiments indicate that the proposed framework can obtain superior reconstruction accuracy in terms of contrast to noise ratio and shape similarity. In addition, high intensity-concentration linearity between different probe targets indicates its potential for quantitative CB-XLCT imaging.

A deep unsupervised clustering-based post-processing framework for high-fidelity Cerenkov luminescence tomography

Cerenkov Luminescence Tomography (CLT) is a promising optical molecular imaging technology. It involves the three-dimensional reconstruction of the distribution of radionuclide probes inside a single object to indicate a tumor's localization and distribution. However, reconstruction using CLT suffers from severe ill-posedness, resulting in numerous artifacts within the reconstructed images. These artifacts influence the visual effect and may misguide the medical professional (diagnostician), resulting in a wrong diagnosis. Here, we proposed a deep unsupervised clustering-based post-processing framework to eliminate artifacts and facilitate high-fidelity CLT. First, an initial reconstructed image was obtained by a specific reconstruction method. Second, voxel data were generated based on the initial reconstructed result. Third, these voxels were divided into three groups, and only the group with the highest mean intensity was chosen as the final reconstructed result. A group of numerical simulation and in vivo mouse-based experiments were conducted to assess the presented framework's feasibility and potential. The results indicated that the proposed framework could reduce the number of artifacts effectively. The reconstructed image's shape and distribution were more similar to the actual light source than those obtained without the proposed framework.

Development of tomographic reconstruction for three-dimensional optical imaging: From the inversion of light propagation to artificial intelligence

Optical molecular tomography (OMT) is an imaging modality which uses an optical signal, especially near-infrared light, to reconstruct the three-dimensional information of the light source in biological tissue. With the advantages of being low-cost, noninvasive and having high sensitivity, OMT has been applied in preclinical and clinical research. However, due to its serious ill-posedness and ill-condition, the solution of OMT requires heavy data analysis and the reconstruction quality is limited. Recently, the artificial intelligence (commonly known as AI)-based methods have been proposed to provide a different tool to solve the OMT problem. In this paper, we review the progress on OMT algorithms, from conventional methods to AI-based methods, and we also give a prospective towards future developments in this domain.